BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7228
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L SP+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 139 NTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 198
Query: 144 SR 145
SR
Sbjct: 199 SR 200
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L SP+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 138 NTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 197
Query: 144 SR 145
SR
Sbjct: 198 SR 199
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIV 60
+NLD LH +G +P +R P+F C T ++ LHY S R GL +V+G++
Sbjct: 98 MENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLL 149
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIV 60
+NLD LH +G +P +R P+F C T ++ LHY S R GL +V+G++
Sbjct: 98 MENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLL 149
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIV 60
+NLD LH +G +P +R P+F C T ++ LHY S R GL +V+G++
Sbjct: 98 MENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLL 149
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIV 60
+NLD LH +G +P +R P+F C T ++ LHY S R GL +V+G++
Sbjct: 98 MENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLL 149
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 32.0 bits (71), Expect = 0.13, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 51 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 90
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 32.0 bits (71), Expect = 0.13, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 32 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 71
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 31.2 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 26.6 bits (57), Expect = 6.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGL 52
PG R + CT T G++ +++Y PG+
Sbjct: 14 PGQRV-TISCTGTSSGSITVNWYQQLPGM 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,907,533
Number of Sequences: 62578
Number of extensions: 191272
Number of successful extensions: 361
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 11
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)