BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7228
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16068|GCYB1_BOVIN Guanylate cyclase soluble subunit beta-1 OS=Bos taurus GN=GUCY1B1
PE=1 SV=1
Length = 619
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDG-ALVLHYYSDRPGLEHIVIGIVK 61
QNLDALHDHL T+YPGMRAPSFRCT+ D G L+LHYYS+R GL+ IVIGI+K
Sbjct: 98 LQNLDALHDHLATIYPGMRAPSFRCTDADKGKGLILHYYSEREGLQDIVIGIIK 151
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L +P+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 545 NTVNLTSRTETTGEKGKINVSEYTYRCLMTPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 604
Query: 144 SR 145
SR
Sbjct: 605 SR 606
>sp|P20595|GCYB1_RAT Guanylate cyclase soluble subunit beta-1 OS=Rattus norvegicus
GN=Gucy1b3 PE=1 SV=2
Length = 619
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDG-ALVLHYYSDRPGLEHIVIGIVK 61
QNLDALHDHL T+YPGMRAPSFRCT+ + G L+LHYYS+R GL+ IVIGI+K
Sbjct: 98 LQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIK 151
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L SP+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 545 NTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 604
Query: 144 SR 145
SR
Sbjct: 605 SR 606
>sp|Q4ZHR9|GCYB1_CANFA Guanylate cyclase soluble subunit beta-1 OS=Canis familiaris
GN=GUCY1B3 PE=2 SV=1
Length = 619
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDG-ALVLHYYSDRPGLEHIVIGIVK 61
QNLDALHDHL T+YPGMRAPSFRCT+ + G L+LHYYS+R GL+ IVIGI+K
Sbjct: 98 LQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIK 151
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L +P+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 545 NTVNLTSRTETTGEKGKINVSEYTYRCLMTPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 604
Query: 144 SR 145
SR
Sbjct: 605 SR 606
>sp|Q02153|GCYB1_HUMAN Guanylate cyclase soluble subunit beta-1 OS=Homo sapiens GN=GUCY1B3
PE=1 SV=1
Length = 619
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDG-ALVLHYYSDRPGLEHIVIGIVK 61
QNLDALHDHL T+YPGMRAPSFRCT+ + G L+LHYYS+R GL+ IVIGI+K
Sbjct: 98 LQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIK 151
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L SP+N DPQF E+RGPV+MKGK EPM+VWFL
Sbjct: 545 NTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFL 604
Query: 144 SR 145
SR
Sbjct: 605 SR 606
>sp|O54865|GCYB1_MOUSE Guanylate cyclase soluble subunit beta-1 OS=Mus musculus GN=Gucy1b3
PE=2 SV=1
Length = 620
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDG-ALVLHYYSDRPGLEHIVIGIVK 61
QNLDALHDHL T+YPGMRAPSFRCT+ + G L+LHYYS+R GL+ IVIGI+K
Sbjct: 98 LQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIK 151
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 85 NDIDFKVLAKSIFSEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
N ++ ++ +G I S++ R L SP+N DP F E+RGPV+MKGK EPM+VWFL
Sbjct: 545 NTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPLFHLEHRGPVSMKGKKEPMQVWFL 604
Query: 144 SR 145
SR
Sbjct: 605 SR 606
>sp|P22717|GCYB2_RAT Guanylate cyclase soluble subunit beta-2 OS=Rattus norvegicus
GN=Gucy1b2 PE=2 SV=1
Length = 682
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 5 NFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKV 62
N F +NLDALH +L Y M APSFR E DGA++LHYYSDR GL HIV GI++
Sbjct: 31 NLTEFIENLDALHSYLALSYQEMNAPSFRVEEGADGAMLLHYYSDRHGLCHIVPGIIEA 89
>sp|O75343|GCYB2_HUMAN Guanylate cyclase soluble subunit beta-2 OS=Homo sapiens
GN=GUCY1B2 PE=2 SV=2
Length = 617
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 5 NFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKV 62
N + F +NLDALH +L Y M APSFR DG + LHYYSDR GL HIV GI++
Sbjct: 14 NLMEFIENLDALHSYLALSYQEMNAPSFRVERGADGKMFLHYYSDRSGLCHIVPGIIEA 72
>sp|Q6DNF7|GCY32_CAEEL Soluble guanylate cyclase gcy-32 OS=Caenorhabditis elegans
GN=gcy-32 PE=2 SV=1
Length = 684
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 9 FQNLDALH---DHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
NLD+LH DH+ +R PSFRC ET DG L+LHY++ RPGL HIV G+VK
Sbjct: 98 LDNLDSLHYFIDHV-VYKANLRGPSFRCEETPDGTLLLHYFTGRPGLYHIVKGVVK 152
>sp|P92006|GCY34_CAEEL Soluble guanylate cyclase gcy-34 OS=Caenorhabditis elegans
GN=gcy-34 PE=2 SV=1
Length = 686
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 9 FQNLDALH---DHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
NLD+LH DH+ +R PSFRC E DG L+LHY++ RPGL HIV G+VK
Sbjct: 98 LDNLDSLHYFIDHV-VYKANLRGPSFRCEENPDGTLMLHYFTGRPGLYHIVKGVVK 152
>sp|Q6DNF4|GCY36_CAEEL Soluble guanylate cyclase gcy-36 OS=Caenorhabditis elegans
GN=gcy-36 PE=1 SV=1
Length = 675
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 9 FQNLDALH---DHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWN 65
NLD+LH DH+ +R PSFRC + DG + LHYY+ RPGL IV G+++ +
Sbjct: 98 LDNLDSLHYFIDHV-VYKANLRGPSFRCEDNPDGTITLHYYTGRPGLYPIVKGVLREAAK 156
Query: 66 KHQLTCTFELGLSKNIS 82
+ F+L +S I+
Sbjct: 157 R-----VFKLDVSMTIT 168
>sp|O02298|GCY35_CAEEL Soluble guanylate cyclase gcy-35 OS=Caenorhabditis elegans
GN=gcy-35 PE=1 SV=3
Length = 688
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 9 FQNLDALH---DHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
+LD+LH DH+ +R PSFRC DG L+LHYYS R GL IV G+V+
Sbjct: 98 LDSLDSLHYFIDHV-VYKTKLRGPSFRCDVQADGTLLLHYYSKRSGLYPIVKGVVR 152
>sp|P90895|GCY33_CAEEL Soluble guanylate cyclase gcy-33 OS=Caenorhabditis elegans
GN=gcy-33 PE=2 SV=4
Length = 945
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 RNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIG 58
R F +F + LD +H++ YP +RAPSF C + L+LHY S R G VIG
Sbjct: 91 RRFSDFIKGLDNIHEYFRFSYPKLRAPSFYCKSESEDGLILHYRSRRTGYLSYVIG 146
>sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophila melanogaster GN=Gyc88E
PE=1 SV=3
Length = 947
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 4 RNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
R+F+N LD LH++L YP MRAPSF C L LHY S R G + +G ++
Sbjct: 94 RDFLN--GLDNLHEYLKFSYPRMRAPSFICENETKQGLTLHYRSKRRGFVYYTMGQIR 149
>sp|Q86C56|GCY31_CAEEL Soluble guanylate cyclase gcy-31 OS=Caenorhabditis elegans
GN=gcy-31 PE=2 SV=2
Length = 702
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 4 RNFVNFQN-LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK- 61
R F F N LD LH++L +P ++ PSF C L LHY S R G H V G ++
Sbjct: 91 RTFPQFLNGLDNLHEYLRFTFPKLKPPSFYCEHESRTGLTLHYRSKRRGFLHYVQGQIRN 150
Query: 62 VSWNKHQLTCTFEL 75
+S Q EL
Sbjct: 151 ISQELFQTEVVIEL 164
>sp|Q9VEU5|GCYDB_DROME Soluble guanylate cyclase 89Db OS=Drosophila melanogaster
GN=Gyc-89Db PE=1 SV=1
Length = 669
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 TNRNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIG 58
T R F +F Q++D +H + YP M++PS + T DD V+ Y S R G+ +IG
Sbjct: 89 TGRYFCDFLQSIDNIHVQMRFTYPKMKSPSMQLTNMDDDGAVILYRSGRTGMSKYLIG 146
>sp|Q9VEU6|GCYDA_DROME Soluble guanylate cyclase 89Da OS=Drosophila melanogaster
GN=Gyc-89Da PE=1 SV=2
Length = 667
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 TNRNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIG 58
T R F +F Q++D +H + YP M++PS + T DD V+ Y S R G+ +IG
Sbjct: 89 TGRYFCDFLQSIDNIHLIMRFTYPKMKSPSMQLTNMDDNGAVILYRSSRTGMSKYLIG 146
>sp|P33402|GCYA2_HUMAN Guanylate cyclase soluble subunit alpha-2 OS=Homo sapiens
GN=GUCY1A2 PE=1 SV=1
Length = 732
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 FQNLDALHDHLGTLY---PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWN 65
F DAL +H+ T + + +PSF C E +G L+LHY+ + ++G++K +
Sbjct: 200 FNGFDALLEHIRTSFGKQATLESPSFLCKELPEGTLMLHYFHPHHIVGFAMLGMIKAAGK 259
Query: 66 K 66
K
Sbjct: 260 K 260
>sp|Q9WVI4|GCYA2_RAT Guanylate cyclase soluble subunit alpha-2 OS=Rattus norvegicus
GN=Gucy1a2 PE=2 SV=2
Length = 730
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 9 FQNLDALHDHLGTLY---PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWN 65
F DAL +H+ T + + +PSF C E +G L LHY+ + ++G++K +
Sbjct: 198 FNGFDALLEHIRTSFGKQATLESPSFLCKELPEGTLKLHYFHPHHTVGFAMLGMIKAAGK 257
Query: 66 K 66
+
Sbjct: 258 R 258
>sp|Q6DNF3|GCY37_CAEEL Soluble guanylate cyclase gcy-37 OS=Caenorhabditis elegans
GN=gcy-37 PE=2 SV=1
Length = 708
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 11 NLDALHDHLGTLY--PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
NL+++H + + M+ P+F+C + L LHY+S R GL IV G+V+
Sbjct: 100 NLNSMHYFIDQIAFKSEMKGPTFQCEPFGESGLKLHYFSFRQGLFPIVKGLVR 152
>sp|C6DBP2|MEND_PECCP 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=menD PE=3 SV=1
Length = 560
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ + D+ AL+ H + D GL H+ +G+ K S
Sbjct: 30 PGSRSTPLTLSAADNHALICHTHFDERGLGHLALGLAKAS 69
>sp|Q6D7W4|MEND_ERWCT 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=menD PE=3 SV=1
Length = 560
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ + D+ AL+ H + D GL H+ +G+ K S
Sbjct: 30 PGSRSTPLTLSAADNHALICHTHFDERGLGHLALGLAKAS 69
>sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IRA1 PE=1 SV=2
Length = 3092
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 73 FELGLSKNISIVNDIDFKVLAKSIFSEGNITSDF--VSRLLCSPDNEDPQFQFEYRGPVT 130
F SK+++ +DF+ LA + S I SD + + +PDNE FE R P
Sbjct: 1291 FYFSCSKSVTQEELVDFRSLAGILASMSGILSDMQELEKSKSAPDNEGDSLSFESRNPAY 1350
Query: 131 MKGKSEPMEV-----WFLSRGKEYI 150
KS +E+ +F+S+ +++
Sbjct: 1351 EVHKSLKLELTKKMNFFISKQCQWL 1375
>sp|Q3YZU2|MEND_SHISS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella sonnei (strain Ss046) GN=menD PE=3
SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q821B0|MEND_SHIFL 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella flexneri GN=menD PE=3 SV=4
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q0T2L9|MEND_SHIF8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella flexneri serotype 5b (strain 8401)
GN=menD PE=3 SV=2
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q32DS4|MEND_SHIDS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q31YJ3|MEND_SHIBS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella boydii serotype 4 (strain Sb227)
GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B2TW50|MEND_SHIB3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7LM66|MEND_ESCF3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q1R9E9|MEND_ECOUT 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain UTI89 / UPEC)
GN=menD PE=3 SV=2
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B1LLL9|MEND_ECOSM 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7N5N0|MEND_ECOLU 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O17:K52:H18 (strain UMN026
/ ExPEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|P17109|MEND_ECOLI 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain K12) GN=menD PE=1
SV=4
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B1IXS2|MEND_ECOLC 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q8FFL1|MEND_ECOL6 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=menD PE=3 SV=2
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q0TFH7|MEND_ECOL5 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=menD PE=3 SV=2
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|A1ADB6|MEND_ECOK1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O1:K1 / APEC GN=menD PE=3
SV=2
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|A8A2D2|MEND_ECOHS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O9:H4 (strain HS) GN=menD
PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B1X8X8|MEND_ECODH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain K12 / DH10B)
GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|C4ZUA7|MEND_ECOBW 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7MXE7|MEND_ECO81 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O81 (strain ED1a) GN=menD
PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7NNU4|MEND_ECO7I 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B5YXQ8|MEND_ECO5E 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q8XDX8|MEND_ECO57 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O157:H7 GN=menD PE=3 SV=3
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7MG32|MEND_ECO45 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|B7UFS7|MEND_ECO27 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O127:H6 (strain E2348/69 /
EPEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|A7ZP83|MEND_ECO24 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|A8ADW9|MEND_CITK8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=menD PE=3 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q8ZNE8|MEND_SALTY 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=menD PE=3 SV=1
Length = 556
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENPAFIHHTHFDERGLGHLALGLAKVS 69
>sp|Q8Z533|MEND_SALTI 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella typhi GN=menD PE=3 SV=1
Length = 556
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 24 PGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVS 63
PG R+ ++ A + H + D GL H+ +G+ KVS
Sbjct: 30 PGSRSTPLTLAAAENPAFIHHTHFDERGLGHLALGLAKVS 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,509,809
Number of Sequences: 539616
Number of extensions: 2309702
Number of successful extensions: 3972
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3883
Number of HSP's gapped (non-prelim): 93
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)