Query psy7228
Match_columns 151
No_of_seqs 145 out of 374
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:21:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07700 HNOB: Heme NO binding 99.9 1E-23 2.2E-28 164.3 7.9 77 2-80 93-170 (171)
2 KOG4171|consensus 99.6 1E-15 2.2E-20 140.6 7.0 79 2-83 93-172 (671)
3 KOG4171|consensus 99.6 1E-14 2.3E-19 134.0 8.7 114 30-148 485-622 (671)
4 KOG3618|consensus 99.0 3.7E-10 8E-15 106.0 6.8 59 84-149 1211-1274(1318)
5 KOG3619|consensus 98.9 4E-09 8.6E-14 100.2 6.9 55 84-144 782-841 (867)
6 KOG1023|consensus 98.7 1.1E-08 2.3E-13 92.3 4.7 112 33-149 342-479 (484)
7 PF00211 Guanylate_cyc: Adenyl 98.5 5.1E-07 1.1E-11 69.0 6.8 57 83-144 122-183 (184)
8 cd07302 CHD cyclase homology d 97.7 0.00091 2E-08 49.4 10.5 103 36-143 49-177 (177)
9 COG2114 CyaA Adenylate cyclase 97.5 0.0001 2.2E-09 59.7 3.8 59 84-147 154-217 (227)
10 smart00044 CYCc Adenylyl- / gu 94.6 0.35 7.6E-06 37.2 8.8 99 12-113 63-187 (194)
11 KOG3618|consensus 71.6 13 0.00028 36.8 6.6 87 55-147 413-528 (1318)
12 cd02989 Phd_like_TxnDC9 Phosdu 64.5 14 0.00031 26.4 4.3 52 38-89 22-73 (113)
13 cd03004 PDI_a_ERdj5_C PDIa fam 58.3 21 0.00046 24.3 4.2 35 38-72 19-53 (104)
14 PF00085 Thioredoxin: Thioredo 56.3 23 0.0005 23.4 4.0 51 38-88 17-68 (103)
15 PF10264 Stork_head: Winged he 55.8 9.7 0.00021 26.9 2.0 26 9-34 29-54 (80)
16 PTZ00051 thioredoxin; Provisio 52.9 30 0.00065 23.1 4.1 32 38-69 18-49 (98)
17 TIGR01068 thioredoxin thioredo 46.9 47 0.001 21.7 4.3 36 38-73 14-49 (101)
18 cd02956 ybbN ybbN protein fami 45.5 51 0.0011 21.9 4.4 34 38-71 12-45 (96)
19 cd02999 PDI_a_ERp44_like PDIa 44.3 48 0.001 23.0 4.2 33 37-69 17-49 (100)
20 cd02965 HyaE HyaE family; HyaE 44.3 19 0.00042 26.5 2.2 70 21-90 10-82 (111)
21 cd03003 PDI_a_ERdj5_N PDIa fam 43.6 74 0.0016 21.5 5.0 34 39-72 19-52 (101)
22 cd02973 TRX_GRX_like Thioredox 41.5 56 0.0012 20.3 3.9 25 43-67 4-28 (67)
23 cd02957 Phd_like Phosducin (Ph 41.0 64 0.0014 22.6 4.5 32 38-69 24-55 (113)
24 cd02954 DIM1 Dim1 family; Dim1 40.1 67 0.0015 23.7 4.6 52 37-88 13-65 (114)
25 TIGR00411 redox_disulf_1 small 39.7 55 0.0012 20.9 3.7 31 42-72 3-33 (82)
26 cd02987 Phd_like_Phd Phosducin 39.3 70 0.0015 24.9 4.8 30 40-69 85-114 (175)
27 PF02830 V4R: V4R domain; Int 37.6 50 0.0011 21.2 3.2 28 46-74 16-44 (62)
28 PF02697 DUF217: Uncharacteriz 36.3 18 0.0004 24.7 1.0 21 101-121 3-24 (71)
29 KOG3619|consensus 36.3 75 0.0016 31.4 5.4 80 60-145 193-289 (867)
30 cd06896 PX_PI3K_C2_gamma The p 35.7 20 0.00044 26.4 1.2 20 13-32 37-56 (101)
31 cd02947 TRX_family TRX family; 33.9 1.1E+02 0.0023 19.0 4.4 28 39-66 11-38 (93)
32 PRK09381 trxA thioredoxin; Pro 33.5 99 0.0022 21.1 4.4 35 38-72 21-55 (109)
33 PHA03204 uracil DNA glycosylas 33.5 1E+02 0.0022 27.1 5.3 72 10-94 185-269 (322)
34 PTZ00391 transport protein par 32.4 1E+02 0.0022 24.5 4.7 54 39-92 97-161 (168)
35 cd03006 PDI_a_EFP1_N PDIa fami 30.2 1.5E+02 0.0032 21.4 5.0 34 37-70 28-61 (113)
36 PRK10996 thioredoxin 2; Provis 29.6 1.2E+02 0.0026 22.3 4.5 35 38-72 52-86 (139)
37 cd07290 PX_PI3K_C2_beta The ph 29.0 33 0.00072 25.3 1.4 20 12-31 41-60 (109)
38 COG4701 Uncharacterized protei 28.5 1E+02 0.0023 24.3 4.1 87 12-113 33-122 (162)
39 cd02948 TRX_NDPK TRX domain, T 28.3 1.4E+02 0.0031 20.4 4.5 32 38-69 17-48 (102)
40 cd02984 TRX_PICOT TRX domain, 27.5 1.5E+02 0.0032 19.5 4.3 31 38-68 14-44 (97)
41 PHA03199 uracil DNA glycosylas 26.8 1.7E+02 0.0037 25.5 5.5 71 10-92 171-253 (304)
42 PF04051 TRAPP: Transport prot 25.9 95 0.0021 23.5 3.5 28 52-79 110-137 (152)
43 PHA03202 uracil DNA glycosylas 25.5 2.3E+02 0.005 24.8 6.1 71 10-92 179-261 (313)
44 PF09536 DUF2378: Protein of u 25.5 3.4E+02 0.0074 21.5 7.0 52 25-77 113-165 (178)
45 COG1983 PspC Putative stress-r 25.3 15 0.00032 25.3 -1.0 26 45-73 6-31 (70)
46 cd02949 TRX_NTR TRX domain, no 25.0 2.2E+02 0.0047 19.1 5.9 35 37-71 12-46 (97)
47 PHA03200 uracil DNA glycosylas 24.6 2.4E+02 0.0052 24.0 5.9 74 9-94 114-199 (255)
48 cd06395 PB1_Map2k5 PB1 domain 24.2 1.2E+02 0.0026 21.8 3.4 40 9-50 22-61 (91)
49 PHA03201 uracil DNA glycosylas 24.1 2.1E+02 0.0045 25.1 5.5 72 10-93 185-268 (318)
50 KOG0907|consensus 23.8 1.3E+02 0.0027 21.7 3.6 33 38-70 21-53 (106)
51 cd03002 PDI_a_MPD1_like PDI fa 23.2 1.8E+02 0.004 19.5 4.3 34 38-71 18-51 (109)
52 PF04468 PSP1: PSP1 C-terminal 22.8 2.7E+02 0.0058 19.3 5.5 53 19-74 31-86 (88)
53 TIGR00412 redox_disulf_2 small 22.5 2E+02 0.0043 18.8 4.2 32 42-73 2-33 (76)
54 PF11910 NdhO: Cyanobacterial 22.1 71 0.0015 21.8 1.8 20 115-134 24-44 (67)
55 COG0092 RpsC Ribosomal protein 21.9 4.8E+02 0.01 21.9 7.5 68 15-83 28-101 (233)
56 cd02975 PfPDO_like_N Pyrococcu 21.3 3E+02 0.0066 19.3 5.3 37 38-75 22-58 (113)
57 PLN00410 U5 snRNP protein, DIM 20.8 2.2E+02 0.0048 21.8 4.6 54 37-90 22-76 (142)
58 cd02413 40S_S3_KH K homology R 20.7 2.2E+02 0.0047 19.6 4.1 53 15-68 7-64 (81)
No 1
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=99.90 E-value=1e-23 Score=164.31 Aligned_cols=77 Identities=38% Similarity=0.638 Sum_probs=70.3
Q ss_pred CccccccccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHccc-ceeEEEeeecc
Q psy7228 2 TNRNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL-TCTFELGLSKN 80 (151)
Q Consensus 2 ~l~dF~~L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~-~v~ve~~~~~~ 80 (151)
|++|| |+|||+||.+++++||+++||+|+|++.+++++.|||+|+|+|+++++.|+|+|+|++|++ +|+|++....+
T Consensus 93 ~~~~F--L~~ld~iH~~v~~~~p~~~~P~f~~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 93 DLFDF--LNNLDNIHEEVRKLYPDAKPPSFRCEEEDDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp SHHHH--HHHHHHHHHHHHHHSTTSS--EEEEEEEETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CHHHH--HHhHHHHHHHHHHhCCCCcCCeEEEEECCCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 78999 9999999999999999999999999999999999999999999999999999999999999 88888765543
No 2
>KOG4171|consensus
Probab=99.60 E-value=1e-15 Score=140.60 Aligned_cols=79 Identities=49% Similarity=0.740 Sum_probs=74.0
Q ss_pred CccccccccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHc-ccceeEEEeeecc
Q psy7228 2 TNRNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKH-QLTCTFELGLSKN 80 (151)
Q Consensus 2 ~l~dF~~L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f-~~~v~ve~~~~~~ 80 (151)
|+.+| |+|||++|++++..|| ++.|||+|+...++++.|||+|.|+|+.+++.|+++++|+.+ +.+|.+.+..+.+
T Consensus 93 ~l~~F--L~~LD~lHd~~~~~y~-mr~PSf~c~~~~d~~l~LhY~S~R~Gl~~iv~G~~~evAk~~f~~dv~~~v~~~~~ 169 (671)
T KOG4171|consen 93 NLQEF--LQNLDNLHDHLRFKYP-MRGPSFRCENESDGGLELHYRSGRPGLYHIVIGQVKEVAKELFGLDVKIKVLERNQ 169 (671)
T ss_pred hHHHH--HHHHHHHHHHHhhccc-cCCCceeeeeCCCCceEEEEecCCcchhhhhhhhHHHHHHHHhcCceEEEEeeccc
Confidence 68899 9999999999999999 999999999999999999999999999999999999999996 5789998888877
Q ss_pred cee
Q psy7228 81 ISI 83 (151)
Q Consensus 81 ~~i 83 (151)
...
T Consensus 170 ~~~ 172 (671)
T KOG4171|consen 170 ESR 172 (671)
T ss_pred ccc
Confidence 766
No 3
>KOG4171|consensus
Probab=99.55 E-value=1e-14 Score=134.00 Aligned_cols=114 Identities=25% Similarity=0.340 Sum_probs=84.7
Q ss_pred eeEEEEccCCEEEE---EEEcCCC--ChhHHHHHHHHHHHHHcc----cceeEEEeeecccee----------eechhhh
Q psy7228 30 SFRCTETDDGALVL---HYYSDRP--GLEHIVIGIVKVSWNKHQ----LTCTFELGLSKNISI----------VNDIDFK 90 (151)
Q Consensus 30 sF~~~~~~~~~l~L---~Y~S~R~--Gl~~~~~GlI~~~Ak~f~----~~v~ve~~~~~~~~i----------~~~~~~~ 90 (151)
.-+|+-.+|--+.+ ++.++-+ -.+++|.|++..+-++-. ++|.|-+..-....+ |=+||||
T Consensus 485 VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG~VvAGVVG~kmPRYCLFGdT 564 (671)
T KOG4171|consen 485 VYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPVTGEPIQIRIGIHSGPVVAGVVGVKMPRYCLFGDT 564 (671)
T ss_pred eEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEEEeccCCeeeeeecccccceeecCCc
Confidence 34566555544443 2222211 289999999999888753 366665533222222 7799999
Q ss_pred hhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 91 VLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 91 ~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
||+||++ .|||| ||++||++|++ ...|+|++||+|+||||+ ||+||||.++.+
T Consensus 565 Vn~AsrmES~s~p~KI~vS~~T~~~l~~----~~~f~f~pRg~v~vk~kg-~m~tyFL~~~~~ 622 (671)
T KOG4171|consen 565 VNLASRMESSSVPGKINVSPTTYRKLKK----QGSFEFEPRGRVEVKGKG-PMETYFLERSLG 622 (671)
T ss_pred hhhhhhhhcCCCCceEEeCHHHHHHHHh----CCCceeeecCccccCCCC-ceEEEEEEecCC
Confidence 9999877 78999 99999999998 556999999999999877 699999999875
No 4
>KOG3618|consensus
Probab=99.04 E-value=3.7e-10 Score=106.03 Aligned_cols=59 Identities=29% Similarity=0.448 Sum_probs=53.0
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCcc
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 149 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~~ 149 (151)
++-||||||+||++ .+.|| ||+++|+.|.. .|+|||||.|++|||. .|.+|++..++++
T Consensus 1211 YDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~------rYeFe~Rg~v~VKGkd-~M~tyLy~~r~d~ 1274 (1318)
T KOG3618|consen 1211 YDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSK------RYEFEYRGTVNVKGKD-QMKTYLYPKRTDH 1274 (1318)
T ss_pred ehhhcchhhhhhhccccCCcceeEecHHHHHHHHh------hccccccceEEEeccC-cceeEEeccccCC
Confidence 89999999999999 77999 99999999965 8999999999999998 6888887776654
No 5
>KOG3619|consensus
Probab=98.87 E-value=4e-09 Score=100.17 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=50.3
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEee
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLS 144 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~ 144 (151)
|+=||+|||.||++ .+|+| |+|+|+..|+. -.|.|++||.|.+||||+ |.+|||.
T Consensus 782 YDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~-----~gy~~~~RG~i~VKGkGe-l~Tyfl~ 841 (867)
T KOG3619|consen 782 YDIWGNTVNVASRMDSTGVPGRIQVTEETANILQG-----LGYRFECRGVINVKGKGE-LETYFLC 841 (867)
T ss_pred ccccccchhhhhcccccCCCCeEEecHHHHHHHhc-----CCeeEEecceEEEecccc-eeEEEec
Confidence 99999999999988 77999 99999999985 589999999999999986 6777777
No 6
>KOG1023|consensus
Probab=98.73 E-value=1.1e-08 Score=92.28 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred EEEccCCEEEEEEEcCCCChh------HHHHHHHHHHHHHc-----ccceeEEEeeeccc----ee------eechhhhh
Q psy7228 33 CTETDDGALVLHYYSDRPGLE------HIVIGIVKVSWNKH-----QLTCTFELGLSKNI----SI------VNDIDFKV 91 (151)
Q Consensus 33 ~~~~~~~~l~L~Y~S~R~Gl~------~~~~GlI~~~Ak~f-----~~~v~ve~~~~~~~----~i------~~~~~~~~ 91 (151)
++...|.-+..-.-..|.|.. .+..++..++...= .+.+.+-+..-... .+ +-+|||||
T Consensus 342 VetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtv 421 (484)
T KOG1023|consen 342 VETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTV 421 (484)
T ss_pred EeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHH
Confidence 566667767766666666643 44455555443321 12223322221111 11 88999999
Q ss_pred hhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCcc
Q psy7228 92 LAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 149 (151)
Q Consensus 92 ~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~~ 149 (151)
|+||++ . ++| +|+.|+..|.+ .++|..+.||.|++|||+..+|+|+++++.++
T Consensus 422 n~AsrMes~G~-~~i~~s~~~~~~l~~----~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~~ 479 (484)
T KOG1023|consen 422 NTASRMESNGK-LMIHLSEEAKNLLTE----RPQFETEERGLVELKGKGVMSTYWLLGESSKS 479 (484)
T ss_pred HHHhhhhhcCC-eEEEecHHHHHHHHh----cCceeeeccCcEEeecCceeeeEEeccCcccc
Confidence 999877 4 899 99999999985 45999999999999999999999999988754
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=98.46 E-value=5.1e-07 Score=69.02 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=48.5
Q ss_pred eeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEee
Q psy7228 83 IVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLS 144 (151)
Q Consensus 83 i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~ 144 (151)
-+.-||+.|+.|+++ .++.| ||+++|+.|.. ..+|.|+.+|++.+|||+ ++.+|+|.
T Consensus 122 ~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~----~~~~~~~~~g~~~lkG~~-~~~~y~~~ 183 (184)
T PF00211_consen 122 EYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNE----SDQFRFEELGRVELKGKG-PVQTYQLN 183 (184)
T ss_dssp EEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTT----HTTEEEEEEEEEEETTSS-EEEEEEEE
T ss_pred ceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcc----cCceEEEEeeeEEEecCC-CcEEEEEE
Confidence 368899999998666 77999 99999999983 569999999999999965 57777775
No 8
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=97.65 E-value=0.00091 Score=49.37 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=69.6
Q ss_pred ccCCEEEEEEEcCCC------ChhHHHHHHHHHHHHHc-----ccceeEEEeeecc----------ceeeechhhhhhhh
Q psy7228 36 TDDGALVLHYYSDRP------GLEHIVIGIVKVSWNKH-----QLTCTFELGLSKN----------ISIVNDIDFKVLAK 94 (151)
Q Consensus 36 ~~~~~l~L~Y~S~R~------Gl~~~~~GlI~~~Ak~f-----~~~v~ve~~~~~~----------~~i~~~~~~~~~~~ 94 (151)
...+.+...+..+.. -...++.-+.+.+.... ...+.+-+..... ..-++-+|+.++.+
T Consensus 49 ~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A 128 (177)
T cd07302 49 TIGDAVMAVFGLPGAHEDHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLA 128 (177)
T ss_pred EeCceEEEEeCCCCCchhHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHH
Confidence 345667777764331 25666677777766652 1233333321111 12266789999888
Q ss_pred hhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEe
Q psy7228 95 SIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143 (151)
Q Consensus 95 s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l 143 (151)
+++ .+|.| +|+.+|+.+.+. .|.+.+.|.+.+||...|+..|-+
T Consensus 129 ~rl~~~a~~~~i~vs~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~y~~ 177 (177)
T cd07302 129 ARLESLAKPGQILVSEATYELLGDA-----GFEFEELGEVELKGKSGPVRVYRL 177 (177)
T ss_pred HHHHhcCCCCEEEECHHHHHhhccC-----ceEEEEeCCEEecCCCCceEEEEC
Confidence 555 66899 999999999652 899999999999999888888853
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=97.50 E-value=0.0001 Score=59.69 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCC
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 147 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~ 147 (151)
+.-||++||+++++ .+|.| +|+.||+++.+ ..+.++..|++.+||...|...|-+.+..
T Consensus 154 ~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~-----~~~~~~~~g~~~lkg~~~~~~v~~~~~~~ 217 (227)
T COG2114 154 YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRD-----LVDLFSGLGSHRLKGLARPVRVYQLCHRS 217 (227)
T ss_pred eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhh-----hhhhhhcCCceecCCCCCceEEEEecccc
Confidence 46799999999777 67899 99999999973 37888899999999999999999887764
No 10
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=94.60 E-value=0.35 Score=37.16 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=58.9
Q ss_pred chHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCCh-------hHHHHHHHHHHHHHc----ccceeEEEeeecc
Q psy7228 12 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGL-------EHIVIGIVKVSWNKH----QLTCTFELGLSKN 80 (151)
Q Consensus 12 LD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl-------~~~~~GlI~~~Ak~f----~~~v~ve~~~~~~ 80 (151)
|+.++..+.....+-. - .+.....+.+...+..+.... ...+..++..+++.- ...+.+.+.....
T Consensus 63 l~~~~~~~~~~i~~~g--g-~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~~~~~l~~riGih~G 139 (194)
T smart00044 63 LNDLYSRFDRIIDRHG--G-YKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQHRGNGLRVRIGIHTG 139 (194)
T ss_pred HHHHHHHHHHHHHhcC--e-EEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEEecc
Confidence 3444444444433332 1 333444677777777766543 566677777665542 2234443322211
Q ss_pred c----------eeeechhhhhhhhhhc----ccCce-ehHHHHHHhcC
Q psy7228 81 I----------SIVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCS 113 (151)
Q Consensus 81 ~----------~i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~ 113 (151)
. .-+.-+|+.||+++++ .+|.| +|++||+.|.+
T Consensus 140 ~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 140 PVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred ceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 1 1366789999999666 67999 99999999964
No 11
>KOG3618|consensus
Probab=71.59 E-value=13 Score=36.80 Aligned_cols=87 Identities=11% Similarity=0.257 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHc---ccceeEEEeeecc----------ceeeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCC
Q psy7228 55 IVIGIVKVSWNKH---QLTCTFELGLSKN----------ISIVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDN 116 (151)
Q Consensus 55 ~~~GlI~~~Ak~f---~~~v~ve~~~~~~----------~~i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~ 116 (151)
+-.|+|.|+-..= ++.|.+-+..-.. .--++-|-+.|++|-.+ .+|++ |||.|-++|..
T Consensus 413 MGLgMI~AirqFd~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d--- 489 (1318)
T KOG3618|consen 413 MGLGMIKAIRQFDQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDD--- 489 (1318)
T ss_pred hcchHHHHHHHHHHHhhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcc---
Confidence 3357888764332 3455554422211 12277788888888444 67999 99999999955
Q ss_pred CCCCceEEeccceE------ecCC-----CCceeEEEeecCC
Q psy7228 117 EDPQFQFEYRGPVT------MKGK-----SEPMEVWFLSRGK 147 (151)
Q Consensus 117 ~~~~f~~~~RG~v~------mkgk-----~~~~~~~~l~~~~ 147 (151)
.|.+|-.-+|+ +-|. ++-|++||+..+.
T Consensus 490 ---~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G~~ 528 (1318)
T KOG3618|consen 490 ---RYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISGQR 528 (1318)
T ss_pred ---cceeccCccccccceeEEeceeeecCCcccceEEecCcc
Confidence 88887654433 2232 3457888887654
No 12
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=64.54 E-value=14 Score=26.44 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeeeccceeeechhh
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLSKNISIVNDIDF 89 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~~i~~~~~~ 89 (151)
++...++++++.++-|..+...++.+|+.+....=+.++...+.++.+.|+.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v 73 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI 73 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC
Confidence 4678999999999999999999999999986432234444444444444443
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=58.31 E-value=21 Score=24.26 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=29.3
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
++-..+.++++.++.|.-+.-.++.+|+.+...+.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~ 53 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVK 53 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 44688999999999999999999999999865443
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=56.28 E-value=23 Score=23.41 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE-EEeeeccceeeechh
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF-ELGLSKNISIVNDID 88 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v-e~~~~~~~~i~~~~~ 88 (151)
++...+.++++.++.|.-+.-.+..+|+.+...+.+ .++...+..+...|+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 68 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYG 68 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTT
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccC
Confidence 678889999999999999999999999999854322 333333333333333
No 15
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=55.83 E-value=9.7 Score=26.88 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.4
Q ss_pred ccCchHHHHHHhhhCCCCCCCeeEEE
Q psy7228 9 FQNLDALHDHLGTLYPGMRAPSFRCT 34 (151)
Q Consensus 9 L~sLD~lH~~v~~~yp~~~~PsF~~~ 34 (151)
--++++|-.++++.||++..||-++.
T Consensus 29 ~at~E~l~~~L~~~yp~i~~Ps~e~l 54 (80)
T PF10264_consen 29 PATQETLREHLRKHYPGIAIPSQEVL 54 (80)
T ss_pred cchHHHHHHHHHHhCCCCCCCCHHHH
Confidence 56788999999999999999997654
No 16
>PTZ00051 thioredoxin; Provisional
Probab=52.86 E-value=30 Score=23.10 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.++++++.++.|.-+...++.+|+.+..
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~ 49 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK 49 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC
Confidence 56788999999999999999999999998754
No 17
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=46.86 E-value=47 Score=21.72 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
++.+.++++++.++.|.-+...++.+++.++..+.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 49 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKF 49 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEE
Confidence 457899999999999999999999999988754443
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=45.47 E-value=51 Score=21.91 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccce
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTC 71 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v 71 (151)
+.-+.+.+++++++-|.-+.-.++.+++.|...+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~ 45 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQF 45 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcE
Confidence 4578899999999999999999999999996543
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=44.33 E-value=48 Score=23.00 Aligned_cols=33 Identities=3% Similarity=-0.059 Sum_probs=29.0
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
.++...+.++++.++-|.-..-.++.+|+.|..
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~ 49 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ 49 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc
Confidence 356789999999999999999999999999864
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=44.29 E-value=19 Score=26.54 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=47.1
Q ss_pred hhCCCCCCCeeEEEEccCCEEEEEEEcC--CCChhHHHHHHHHHHHHHcccceeE-EEeeeccceeeechhhh
Q psy7228 21 TLYPGMRAPSFRCTETDDGALVLHYYSD--RPGLEHIVIGIVKVSWNKHQLTCTF-ELGLSKNISIVNDIDFK 90 (151)
Q Consensus 21 ~~yp~~~~PsF~~~~~~~~~l~L~Y~S~--R~Gl~~~~~GlI~~~Ak~f~~~v~v-e~~~~~~~~i~~~~~~~ 90 (151)
+.||+...=.|+=.-..++-..+.+++. |++=|..+.-+++.+|+.|...+.+ .++...+.++-..||.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~ 82 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVL 82 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCC
Confidence 3577777777762223345666666666 7899999999999999999876544 44444445555555554
No 21
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=43.58 E-value=74 Score=21.46 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=29.0
Q ss_pred CEEEEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 39 GALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 39 ~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
....+.++++.++-|.-+...++.+|+.+...+.
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~ 52 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIR 52 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceE
Confidence 5678889999999999999999999999975543
No 22
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=41.51 E-value=56 Score=20.35 Aligned_cols=25 Identities=4% Similarity=-0.242 Sum_probs=21.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHc
Q psy7228 43 LHYYSDRPGLEHIVIGIVKVSWNKH 67 (151)
Q Consensus 43 L~Y~S~R~Gl~~~~~GlI~~~Ak~f 67 (151)
.-|+++.++.|..+.-+++.+++.+
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~ 28 (67)
T cd02973 4 EVFVSPTCPYCPDAVQAANRIAALN 28 (67)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC
Confidence 4577888899999999999998865
No 23
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=40.98 E-value=64 Score=22.60 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=28.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+....++++++.++-|..+.-.++.+|+.+..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~ 55 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE 55 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 35778899999999999999999999999863
No 24
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=40.06 E-value=67 Score=23.68 Aligned_cols=52 Identities=4% Similarity=0.019 Sum_probs=36.4
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee-EEEeeeccceeeechh
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT-FELGLSKNISIVNDID 88 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~-ve~~~~~~~~i~~~~~ 88 (151)
.++-..+.++.+.+|-|..+.-+++.+|+.+...+. +.++...+.++...||
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcC
Confidence 355688899999999999999999999999976543 3333333333333333
No 25
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=39.67 E-value=55 Score=20.92 Aligned_cols=31 Identities=6% Similarity=-0.129 Sum_probs=25.2
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
..-|.++-++.|.-+.-+++.+|+.++..+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~ 33 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVE 33 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceE
Confidence 3467888889999999999999998865443
No 26
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=39.32 E-value=70 Score=24.86 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 40 ALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 40 ~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
-+.+|++++.++-|..+.-.++.+|+.|..
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~ 114 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPA 114 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCC
Confidence 688999999999999999999999999864
No 27
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=37.56 E-value=50 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=17.6
Q ss_pred EcCCCChhHHHHHHHHHHHHHc-ccceeEE
Q psy7228 46 YSDRPGLEHIVIGIVKVSWNKH-QLTCTFE 74 (151)
Q Consensus 46 ~S~R~Gl~~~~~GlI~~~Ak~f-~~~v~ve 74 (151)
.+.++ .+.+..|++.|++..+ +..++++
T Consensus 16 ~~~~p-~C~~~~G~~~G~~~~~~~~~~~v~ 44 (62)
T PF02830_consen 16 NSDEP-VCWFTAGYLAGFFSALFGKEVEVE 44 (62)
T ss_dssp --SS----HHHHHHHHHHHHHHHSSEEEEE
T ss_pred CCCCc-eEHHHHHHHHHHHHHHhCCceEEE
Confidence 45564 9999999999999875 4555443
No 28
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.31 E-value=18 Score=24.71 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=16.6
Q ss_pred ce-ehHHHHHHhcCCCCCCCCc
Q psy7228 101 NI-TSDFVSRLLCSPDNEDPQF 121 (151)
Q Consensus 101 ~i-~S~~ty~~l~~~~~~~~~f 121 (151)
.| ||+++|+.|..-...+.+|
T Consensus 3 tIsIsdevY~rL~~~K~~~eSF 24 (71)
T PF02697_consen 3 TISISDEVYERLKKLKREDESF 24 (71)
T ss_pred eEEecHHHHHHHHHHhcCCCCH
Confidence 48 9999999998766556665
No 29
>KOG3619|consensus
Probab=36.25 E-value=75 Score=31.44 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=48.2
Q ss_pred HHHHHHHcccceeEEEeeecccee----------eechhhhhhhh-hhc---ccCce-ehHHHHHHhcCCCCCCCCceEE
Q psy7228 60 VKVSWNKHQLTCTFELGLSKNISI----------VNDIDFKVLAK-SIF---SEGNI-TSDFVSRLLCSPDNEDPQFQFE 124 (151)
Q Consensus 60 I~~~Ak~f~~~v~ve~~~~~~~~i----------~~~~~~~~~~~-s~~---~~~~i-~S~~ty~~l~~~~~~~~~f~~~ 124 (151)
|+-+..+-+.++++-+..-..... ++-|+.-|.+| -|+ .||++ ||+.|-++|.. .|..|
T Consensus 193 I~~vr~at~~dvnmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g------~yeve 266 (867)
T KOG3619|consen 193 IKQVREATGVDVNMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNG------EYEVE 266 (867)
T ss_pred HHHHHHHhCCCCceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCC------Cceee
Confidence 555555566666665532222211 78888888777 333 78999 99999999976 67776
Q ss_pred eccc--eEecCCCCceeEEEeec
Q psy7228 125 YRGP--VTMKGKSEPMEVWFLSR 145 (151)
Q Consensus 125 ~RG~--v~mkgk~~~~~~~~l~~ 145 (151)
+.=- =+-=.|.....|||...
T Consensus 267 ~g~g~~r~~~l~~~~~~ty~i~~ 289 (867)
T KOG3619|consen 267 PGHGGERDPYLKEHGIETYLIIP 289 (867)
T ss_pred cCCCcccchHHHhcCCceEEecc
Confidence 6422 11112233455666654
No 30
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=35.72 E-value=20 Score=26.35 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=18.1
Q ss_pred hHHHHHHhhhCCCCCCCeeE
Q psy7228 13 DALHDHLGTLYPGMRAPSFR 32 (151)
Q Consensus 13 D~lH~~v~~~yp~~~~PsF~ 32 (151)
-.+|..+++.||+..+|+|-
T Consensus 37 ~eLH~~L~~~FP~~~LP~fP 56 (101)
T cd06896 37 SELHSQLQKQFPSLALPEFP 56 (101)
T ss_pred HHHHHHHHHHCccccccCCC
Confidence 45899999999999999994
No 31
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=33.91 E-value=1.1e+02 Score=19.02 Aligned_cols=28 Identities=7% Similarity=0.167 Sum_probs=25.0
Q ss_pred CEEEEEEEcCCCChhHHHHHHHHHHHHH
Q psy7228 39 GALVLHYYSDRPGLEHIVIGIVKVSWNK 66 (151)
Q Consensus 39 ~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~ 66 (151)
..+.+.++++.++.|.-+.-.++.+++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 5678889999999999999999999998
No 32
>PRK09381 trxA thioredoxin; Provisional
Probab=33.52 E-value=99 Score=21.07 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
+.-..+.++++.++.|.-+.-.++.+|+.+...+.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~ 55 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLT 55 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcE
Confidence 55688899999988999999999999999965543
No 33
>PHA03204 uracil DNA glycosylase; Provisional
Probab=33.50 E-value=1e+02 Score=27.09 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=48.1
Q ss_pred cCchHHHHHHhhhCCCCCCCee-EEEEcc-CCEEEEE----E-------EcCCCChhHHHHHHHHHHHHHcccceeEEEe
Q psy7228 10 QNLDALHDHLGTLYPGMRAPSF-RCTETD-DGALVLH----Y-------YSDRPGLEHIVIGIVKVSWNKHQLTCTFELG 76 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~PsF-~~~~~~-~~~l~L~----Y-------~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~ 76 (151)
-||-+|..++...||+...|.- .++... .+-|.|- . ++.+ |...|...+|+.+++.-
T Consensus 185 pSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~gkp~SH~~~-GWe~FTd~vI~~Ls~~~--------- 254 (322)
T PHA03204 185 PSLKNILAAVKACYPSIELGSHGCLEDWAKRGVLLLNSVLTVKRGDPGSHHSV-GWQILVRNVLRRLSQST--------- 254 (322)
T ss_pred ccHHHHHHHHHHhcCCCCCCCCCCHHHHHhcCeEeeEcceeecCCCCCccccC-ChHHHHHHHHHHHHcCC---------
Confidence 5788999999999998877742 222222 2222221 1 2233 89999999999998742
Q ss_pred eeccceeeechhhhhhhh
Q psy7228 77 LSKNISIVNDIDFKVLAK 94 (151)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~ 94 (151)
+..++.+||.-+-..
T Consensus 255 ---~~vVFlLWG~~Aq~k 269 (322)
T PHA03204 255 ---RGIVFMLWGAQAQTM 269 (322)
T ss_pred ---CCeEEEEeCHHHHHH
Confidence 355899999977443
No 34
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=32.43 E-value=1e+02 Score=24.46 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=36.9
Q ss_pred CEEEEEEEcCCCC-----hhHHHHHHHHHHHHHcccceeEEEeee------ccceeeechhhhhh
Q psy7228 39 GALVLHYYSDRPG-----LEHIVIGIVKVSWNKHQLTCTFELGLS------KNISIVNDIDFKVL 92 (151)
Q Consensus 39 ~~l~L~Y~S~R~G-----l~~~~~GlI~~~Ak~f~~~v~ve~~~~------~~~~i~~~~~~~~~ 92 (151)
+-+..+|.|.=.+ ...|+-|+|+|+-...+-+.+|.-+.. .+..++..|+..|.
T Consensus 97 ~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~v~ 161 (168)
T PTZ00391 97 NLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPEVI 161 (168)
T ss_pred chhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHHHH
Confidence 3455556663212 456999999999999988877766553 35556777777664
No 35
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=30.17 E-value=1.5e+02 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=29.3
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccc
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLT 70 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~ 70 (151)
++.-..+.++.+.+|-|..+.-.++.+|+.+...
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~ 61 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ 61 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4566788999999999999999999999999654
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=29.59 E-value=1.2e+02 Score=22.35 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=28.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
+....+.++++.++.|.-....+..+++.++..+.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~ 86 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVR 86 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence 55678889999999999888999999998875543
No 37
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=28.95 E-value=33 Score=25.28 Aligned_cols=20 Identities=40% Similarity=0.856 Sum_probs=17.7
Q ss_pred chHHHHHHhhhCCCCCCCee
Q psy7228 12 LDALHDHLGTLYPGMRAPSF 31 (151)
Q Consensus 12 LD~lH~~v~~~yp~~~~PsF 31 (151)
...+|..+++.||...+|+|
T Consensus 41 F~~Lh~kLk~~FP~~~lP~L 60 (109)
T cd07290 41 FQELHNKLRLLFPSSKLPSF 60 (109)
T ss_pred HHHHHHHHHHHCccccCCCC
Confidence 36789999999998889988
No 38
>COG4701 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.49 E-value=1e+02 Score=24.27 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=59.0
Q ss_pred chHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcC--CCChhHHHHHHHHHH-HHHcccceeEEEeeeccceeeechh
Q psy7228 12 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSD--RPGLEHIVIGIVKVS-WNKHQLTCTFELGLSKNISIVNDID 88 (151)
Q Consensus 12 LD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~--R~Gl~~~~~GlI~~~-Ak~f~~~v~ve~~~~~~~~i~~~~~ 88 (151)
|+.|..++.-.+|.---|-+++-...++.+.|.--+- |.++-.=-.-|+..+ +..|.....||+..
T Consensus 33 il~iNr~lq~ilPqqlqg~~RvaN~rq~~LvLEtANAsvrm~llyeQ~~lL~~lrqq~fP~l~sieirI----------- 101 (162)
T COG4701 33 ILLINRQLQDILPQQLQGQVRVANVRQGNLVLETANASVRMKLLYEQLHLLTQLRQQGFPHLISIEIRI----------- 101 (162)
T ss_pred HHHHHHHHHHhChHhhccceeeeeecCceeeeecchHHHHHHHHHhhHHHHHHHHhccCCcceeEEEEE-----------
Confidence 3445667788899888899999999999999987654 433333333566666 67787766665521
Q ss_pred hhhhhhhhcccCceehHHHHHHhcC
Q psy7228 89 FKVLAKSIFSEGNITSDFVSRLLCS 113 (151)
Q Consensus 89 ~~~~~~s~~~~~~i~S~~ty~~l~~ 113 (151)
+-+++.+|+|+|+++-..=.+
T Consensus 102 ----NP~l~~~~~~~s~da~~~~~~ 122 (162)
T COG4701 102 ----NPELYRQSKITSEDARAANPR 122 (162)
T ss_pred ----CHHHHhcccccchhhhhCCCC
Confidence 125667788888887665444
No 39
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=28.33 E-value=1.4e+02 Score=20.37 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
++-..+.++++.++-|--+.-.++.+++.++.
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~ 48 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD 48 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC
Confidence 55678999999999999998899999999863
No 40
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=27.52 E-value=1.5e+02 Score=19.48 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=26.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+..+.+.++.+.++-|.-+...++.+++.++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~ 44 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF 44 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC
Confidence 4678888999999999999999999999864
No 41
>PHA03199 uracil DNA glycosylase; Provisional
Probab=26.77 E-value=1.7e+02 Score=25.48 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=47.0
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEEcc-CCEEEE----EE-----EcCC-CChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTETD-DGALVL----HY-----YSDR-PGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~~~-~~~l~L----~Y-----~S~R-~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
-||-+|..++...||+..+|. =..+... .+-|.| +. .|++ .|...|...+|+.+++.-
T Consensus 171 PSL~NIfKEL~~dl~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~g~~~SH~~~GWe~FTd~vI~~Ls~~~---------- 240 (304)
T PHA03199 171 PSLKNIFAALMESYPHLPLPTHGCLDNWARQGVLLLNTTLTVKRGTPGSHFYLGWDMLIKRMLKRLCENR---------- 240 (304)
T ss_pred ccHHHHHHHHHHhcCCCCCCCCCCHHHHHhcCEEeeEcceeecCCCCCccccCCHHHHHHHHHHHHHhcC----------
Confidence 478899999999999888873 2222221 122222 11 1333 389999999999998743
Q ss_pred eccceeeechhhhhh
Q psy7228 78 SKNISIVNDIDFKVL 92 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~ 92 (151)
+..++.+||.-+-
T Consensus 241 --~~vVFlLWG~~Aq 253 (304)
T PHA03199 241 --TGLVFMLWGAHAQ 253 (304)
T ss_pred --CCeEEEEcCHHHH
Confidence 3458999998664
No 42
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=25.88 E-value=95 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHcccceeEEEeeec
Q psy7228 52 LEHIVIGIVKVSWNKHQLTCTFELGLSK 79 (151)
Q Consensus 52 l~~~~~GlI~~~Ak~f~~~v~ve~~~~~ 79 (151)
+..|+-|+|+|+-..++-+++|..+...
T Consensus 110 ~~~f~~GiIrGaL~~lg~~~~Vta~~~~ 137 (152)
T PF04051_consen 110 YLAFPCGIIRGALESLGFPAEVTAESDP 137 (152)
T ss_dssp TTHHHHHHHHHHHHHTTEEEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEEEec
Confidence 6788999999999999877777665543
No 43
>PHA03202 uracil DNA glycosylase; Provisional
Probab=25.54 E-value=2.3e+02 Score=24.77 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=46.7
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEEcc-CCEEEEE----E-----EcCCC-ChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTETD-DGALVLH----Y-----YSDRP-GLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~~~-~~~l~L~----Y-----~S~R~-Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
-||-+|..++...|++..+|. =..+... .+-|.|- . .|++. |...|...+|+.+++.-
T Consensus 179 pSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~gka~SH~~~GWe~FTd~vI~~L~~~~---------- 248 (313)
T PHA03202 179 PSLRNIYSAVQKSYPSFRPPMHGFLEKWAEQGVLLINTTLTVARGKPGSHATLGWHRLVRAVIDRLCTTS---------- 248 (313)
T ss_pred cCHHHHHHHHHHHcCCCCCCCCCCHHHHHhcCeEeeecceeeeCCCCCccccCChHHHHHHHHHHHHhcC----------
Confidence 578899999999999888884 1111111 2222221 1 13322 89999999999998753
Q ss_pred eccceeeechhhhhh
Q psy7228 78 SKNISIVNDIDFKVL 92 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~ 92 (151)
+..++.+||.-+-
T Consensus 249 --~~vVF~LWG~~Aq 261 (313)
T PHA03202 249 --QGLVFMLWGAHAQ 261 (313)
T ss_pred --CCcEEEEeCHHHH
Confidence 2458999998664
No 44
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=25.49 E-value=3.4e+02 Score=21.45 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=43.8
Q ss_pred CCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccc-eeEEEee
Q psy7228 25 GMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLT-CTFELGL 77 (151)
Q Consensus 25 ~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~-v~ve~~~ 77 (151)
.-+..+-++++.++.+..|+....-. ...|..|+|+++-+.-+.. +.|+...
T Consensus 113 ~~ny~e~~~~~~G~~~~rl~~~~~~~-~p~f~~G~l~~~L~~~Ga~~~~V~~~~ 165 (178)
T PF09536_consen 113 GVNYGERRVEWLGPRSARLRMNRDFM-PPAFHEGVLEAALEAAGARGPRVRVRE 165 (178)
T ss_pred ccCcceeEEEEeCCceEEEEEecCCC-ChHHHHHHHHHHHHHcCCCCCEEEEEe
Confidence 56677888999999999999999884 8999999999999999865 5665543
No 45
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=25.35 E-value=15 Score=25.35 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=18.8
Q ss_pred EEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 45 YYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 45 Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
|+|++.++ +.|..-|+|++|+-+.++
T Consensus 6 ~Rs~~nr~---iaGVcgGla~yf~id~tl 31 (70)
T COG1983 6 YRSRKNRM---IAGVCGGLAEYFGIDPTL 31 (70)
T ss_pred hcCccCCE---eeeeehhHHHHhCCChHH
Confidence 55555443 779999999999876554
No 46
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=25.03 E-value=2.2e+02 Score=19.06 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.5
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccce
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTC 71 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v 71 (151)
++..+.+.|+++.++.|.-+.-.++.+++.+...+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v 46 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAV 46 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCce
Confidence 35567788888999999999999999999987543
No 47
>PHA03200 uracil DNA glycosylase; Provisional
Probab=24.60 E-value=2.4e+02 Score=23.97 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=48.3
Q ss_pred ccCchHHHHHHhhhCCCCCCCe-eEEEEcc-CCEEEE----EEE-----cC-CCChhHHHHHHHHHHHHHcccceeEEEe
Q psy7228 9 FQNLDALHDHLGTLYPGMRAPS-FRCTETD-DGALVL----HYY-----SD-RPGLEHIVIGIVKVSWNKHQLTCTFELG 76 (151)
Q Consensus 9 L~sLD~lH~~v~~~yp~~~~Ps-F~~~~~~-~~~l~L----~Y~-----S~-R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~ 76 (151)
=.||-+|..++...+|+...|. =..+.-. .+-|.| +.. |+ ..|...|..-+|+.+++.-
T Consensus 114 PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~gk~~SH~~~GWe~FTd~vI~~l~~~~--------- 184 (255)
T PHA03200 114 PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTVFTVVHGQPGSHEALGWQTLSDRVISRLSEKR--------- 184 (255)
T ss_pred CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeeeeeeeCCCcCccccCCHHHHHHHHHHHHHccC---------
Confidence 3578899999999998888773 2223222 222222 111 22 2389999999999987753
Q ss_pred eeccceeeechhhhhhhh
Q psy7228 77 LSKNISIVNDIDFKVLAK 94 (151)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~ 94 (151)
+..++.+||.-+-..
T Consensus 185 ---~~vVFlLWG~~Aq~k 199 (255)
T PHA03200 185 ---EHLVFMLWGAQAQKL 199 (255)
T ss_pred ---CCeEEEEcCHHHHHH
Confidence 345899999977443
No 48
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=24.25 E-value=1.2e+02 Score=21.75 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCC
Q psy7228 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP 50 (151)
Q Consensus 9 L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~ 50 (151)
..+++++-+-++...|++..-.|+.+..+.+.++ -+|+-.
T Consensus 22 ~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRIT--VRSDeE 61 (91)
T cd06395 22 QLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRIT--VRSDEE 61 (91)
T ss_pred cccHHHHHHHHHHhcccccccceeeccccCCeeE--ecchHH
Confidence 4567888888899999999999999887777655 467664
No 49
>PHA03201 uracil DNA glycosylase; Provisional
Probab=24.05 E-value=2.1e+02 Score=25.14 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=48.3
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEEcc-CCEEEEEE---------EcCC-CChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTETD-DGALVLHY---------YSDR-PGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~~~-~~~l~L~Y---------~S~R-~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
-||-+|..++...||+...|. =..+... .+-|.|-. .|++ .|...|...+|+.+++.-
T Consensus 185 pSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtvLTV~~g~a~SH~~~GWe~FTd~vI~~L~~~~---------- 254 (318)
T PHA03201 185 PSLRNILAAVRNCCPDARMSGHGCLEKWARGGVLLLNTTLTVRRGEPASHAKIGWDRFVGSVVRRLAASR---------- 254 (318)
T ss_pred hhHHHHHHHHHHhccCCCCCCCcCHHHHhhcCEEeEecceeecCCCCCccccCCHHHHHHHHHHHHHhcC----------
Confidence 578899999999998887774 2222222 33333322 1333 389999999999998753
Q ss_pred eccceeeechhhhhhh
Q psy7228 78 SKNISIVNDIDFKVLA 93 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~~ 93 (151)
+..++.+||.-+-.
T Consensus 255 --~~vVF~LWG~~Aq~ 268 (318)
T PHA03201 255 --PGLVFMLWGAHAQN 268 (318)
T ss_pred --CCeEEEecCHHHHh
Confidence 24489999986643
No 50
>KOG0907|consensus
Probab=23.76 E-value=1.3e+02 Score=21.72 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLT 70 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~ 70 (151)
+.-+.+++++.++|=|....=.++.+|..|..-
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v 53 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDV 53 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCC
Confidence 566789999999999999999999999999863
No 51
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=23.24 E-value=1.8e+02 Score=19.46 Aligned_cols=34 Identities=6% Similarity=-0.050 Sum_probs=28.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccce
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTC 71 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v 71 (151)
+....+.++++.++.|.-+.-.+..+|+.+...+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~ 51 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLV 51 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCc
Confidence 3448899999999999988899999999987543
No 52
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=22.83 E-value=2.7e+02 Score=19.28 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=32.9
Q ss_pred HhhhCCCCCCC--eeEEE-EccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEE
Q psy7228 19 LGTLYPGMRAP--SFRCT-ETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFE 74 (151)
Q Consensus 19 v~~~yp~~~~P--sF~~~-~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve 74 (151)
.+...-..++| -+.|+ .-+.+.+.++|.++.. .=+..|++.+|+.|+..|++.
T Consensus 31 c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~r---vDFR~Lvr~L~~~f~~RIem~ 86 (88)
T PF04468_consen 31 CRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESR---VDFRELVRDLAREFKTRIEMR 86 (88)
T ss_pred HHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCc---CcHHHHHHHHHHHhCceEEEE
Confidence 33333444443 23344 3456788888888753 224688999999998776553
No 53
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=22.55 E-value=2e+02 Score=18.81 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=26.1
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
.+..+++.++.|..+.=.++.+++.++..+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~ 33 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEF 33 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEE
Confidence 45567788999999999999999998765444
No 54
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=22.15 E-value=71 Score=21.85 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=16.1
Q ss_pred CCCCCCceEEeccc-eEecCC
Q psy7228 115 DNEDPQFQFEYRGP-VTMKGK 134 (151)
Q Consensus 115 ~~~~~~f~~~~RG~-v~mkgk 134 (151)
+...+.|.||-+|+ +.|||.
T Consensus 24 D~~~P~Yife~~GEvl~ikgd 44 (67)
T PF11910_consen 24 DPRPPSYIFEGPGEVLDIKGD 44 (67)
T ss_pred CCCCCcceecCCCeEEEecCC
Confidence 34577899999999 678885
No 55
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=4.8e+02 Score=21.89 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChh-----HHHHHHHHHHHHHccc-ceeEEEeeecccee
Q psy7228 15 LHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLE-----HIVIGIVKVSWNKHQL-TCTFELGLSKNISI 83 (151)
Q Consensus 15 lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~-----~~~~GlI~~~Ak~f~~-~v~ve~~~~~~~~i 83 (151)
|..++.+.+-.+..-.++++.. ++...+.-++.|||+- .=+.=|=+.+.+.|+. ++.|++....+.++
T Consensus 28 Ire~l~k~l~~Ag~s~veIeR~-~~~~~V~I~aarPg~VIGk~G~~I~~L~~~l~k~~g~~~v~I~i~EV~~peL 101 (233)
T COG0092 28 IREFLEKELSNAGISGVEIERT-PKGTRVTIHAARPGLVIGKKGSNIEKLRKELEKLFGKENVQINIEEVKKPEL 101 (233)
T ss_pred HHHHHHHHHHhCCcceEEEEec-CCceEEEEEeCCCcceEcCCCccHHHHHHHHHHHhCCCCceEEEEEcCCCCc
Confidence 6888899999999999999988 8899999999999742 2233355667788887 78999988777765
No 56
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=21.26 E-value=3e+02 Score=19.34 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=28.4
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFEL 75 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~ 75 (151)
+..+.+.++.+.++.|..+.-+++.+|+.+ ..+++..
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~ 58 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEI 58 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEE
Confidence 455777777888899999999999999887 4444433
No 57
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=20.81 E-value=2.2e+02 Score=21.77 Aligned_cols=54 Identities=4% Similarity=0.014 Sum_probs=40.3
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee-EEEeeeccceeeechhhh
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT-FELGLSKNISIVNDIDFK 90 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~-ve~~~~~~~~i~~~~~~~ 90 (151)
++.-+.+.++...+|-|-.+.-+++.+|+.+...+. +.++...+.++-..|+.+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~ 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc
Confidence 456788999999999999999999999999976555 444444555555555554
No 58
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.65 E-value=2.2e+02 Score=19.59 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=41.0
Q ss_pred HHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChh-----HHHHHHHHHHHHHcc
Q psy7228 15 LHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLE-----HIVIGIVKVSWNKHQ 68 (151)
Q Consensus 15 lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~-----~~~~GlI~~~Ak~f~ 68 (151)
++.++.+.+.++..-.+++++. .+.+.+.-++.|||+. .-..=|-..+.+.|+
T Consensus 7 Ire~l~k~~~~agis~IeI~Rt-~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~ 64 (81)
T cd02413 7 LNEFLTRELAEDGYSGVEVRVT-PTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFN 64 (81)
T ss_pred HHHHHHHHHHhCCeeeEEEEEc-CCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhC
Confidence 6788888999999999999985 6789999999999743 334445566666665
Done!