Query psy7228
Match_columns 151
No_of_seqs 145 out of 374
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:22:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sj5_A Methyl-accepting chemot 99.9 1.8E-23 6.3E-28 164.9 7.7 77 2-81 90-166 (188)
2 3tfg_A ALR2278 protein; heme-b 99.9 2.6E-23 9E-28 163.7 8.4 76 2-79 93-168 (189)
3 2kii_A Putative uncharacterize 99.9 1.2E-22 4.1E-27 159.0 9.1 74 2-78 90-164 (181)
4 2wz1_A Guanylate cyclase solub 99.0 5E-10 1.7E-14 88.7 7.0 65 84-148 133-202 (219)
5 1y10_A Hypothetical protein RV 99.0 1E-09 3.5E-14 95.4 8.2 108 38-148 264-379 (407)
6 3r5g_A CYAB; adenylyl cyclase, 98.8 1.4E-08 4.9E-13 77.8 7.7 60 83-148 131-195 (198)
7 3et6_A Soluble guanylyl cyclas 98.8 4.6E-09 1.6E-13 80.3 4.9 60 83-147 124-188 (190)
8 1ab8_A Adenylyl cyclase; lyase 98.8 7.8E-10 2.7E-14 87.4 0.1 60 84-148 147-211 (220)
9 3mr7_A Adenylate/guanylate cyc 98.7 3.6E-08 1.2E-12 75.4 8.5 108 36-148 55-175 (189)
10 3uvj_A Guanylate cyclase solub 98.7 1.6E-08 5.3E-13 80.1 6.0 61 83-147 128-196 (225)
11 1ybt_A Hydrolase, alpha/beta h 98.7 1.5E-08 5E-13 78.1 5.6 105 38-149 67-181 (184)
12 1fx2_A Receptor-type adenylate 98.7 6.9E-09 2.4E-13 81.9 3.6 62 84-147 154-220 (235)
13 1yk9_A Adenylate cyclase; beta 98.6 1.4E-08 4.8E-13 79.3 3.7 58 84-147 125-187 (204)
14 2w01_A Adenylate cyclase; guan 98.6 8.2E-08 2.8E-12 74.7 7.7 60 82-147 132-196 (208)
15 1wc3_A Adenylate cyclase; solu 98.6 4.4E-08 1.5E-12 77.2 5.7 61 82-149 153-218 (219)
16 1azs_A VC1; complex (lyase/hyd 97.9 1.3E-06 4.5E-11 69.4 -0.0 55 84-146 149-212 (220)
17 4euy_A Uncharacterized protein 62.6 18 0.00061 23.2 5.4 32 37-68 17-48 (105)
18 3zzx_A Thioredoxin; oxidoreduc 54.8 15 0.00051 24.5 4.0 33 38-70 20-52 (105)
19 1ilo_A Conserved hypothetical 54.1 18 0.00063 21.6 4.0 33 41-73 2-34 (77)
20 3m9j_A Thioredoxin; oxidoreduc 50.9 20 0.00068 22.5 4.0 32 38-69 20-51 (105)
21 2fgx_A Putative thioredoxin; N 50.7 11 0.00038 26.2 2.8 47 42-90 32-79 (107)
22 2j3w_B ZGC 92866, trafficking 49.2 32 0.0011 26.5 5.5 43 52-94 139-181 (188)
23 3cxm_A Uracil-DNA glycosylase; 47.4 34 0.0012 28.0 5.6 74 10-94 124-210 (268)
24 3gnj_A Thioredoxin domain prot 47.1 33 0.0011 21.7 4.7 36 38-73 22-57 (111)
25 3die_A Thioredoxin, TRX; elect 46.5 37 0.0013 21.2 4.7 37 37-73 18-54 (106)
26 1thx_A Thioredoxin, thioredoxi 46.0 43 0.0015 21.2 5.1 36 38-73 25-60 (115)
27 2i4a_A Thioredoxin; acidophIle 45.4 44 0.0015 20.8 5.0 36 38-73 20-55 (107)
28 2e0q_A Thioredoxin; electron t 45.2 29 0.00098 21.4 4.0 32 38-69 16-47 (104)
29 2trx_A Thioredoxin; electron t 44.9 46 0.0016 20.9 5.1 36 38-73 20-55 (108)
30 1gh2_A Thioredoxin-like protei 43.3 30 0.001 22.0 3.9 31 38-68 21-51 (107)
31 1fo5_A Thioredoxin; disulfide 43.2 31 0.0011 20.7 3.8 33 42-74 6-38 (85)
32 1xwb_A Thioredoxin; dimerizati 43.2 36 0.0012 21.2 4.3 35 38-72 20-54 (106)
33 3hxs_A Thioredoxin, TRXP; elec 42.9 67 0.0023 21.4 5.9 38 36-73 49-86 (141)
34 1zzo_A RV1677; thioredoxin fol 42.2 52 0.0018 21.2 5.1 31 38-68 25-55 (136)
35 2o8v_B Thioredoxin 1; disulfid 40.5 49 0.0017 22.2 4.9 36 38-73 40-75 (128)
36 2yzu_A Thioredoxin; redox prot 39.7 56 0.0019 20.2 4.8 36 38-73 18-53 (109)
37 2j8x_A Uracil-DNA glycosylase; 39.7 36 0.0012 27.2 4.6 73 10-94 89-173 (231)
38 3kzq_A Putative uncharacterize 39.5 45 0.0015 24.5 4.9 37 41-77 3-40 (208)
39 2l6c_A Thioredoxin; oxidoreduc 39.2 38 0.0013 21.9 4.0 31 38-68 19-49 (110)
40 2voc_A Thioredoxin; electron t 39.0 58 0.002 20.9 4.9 36 38-73 17-52 (112)
41 2vlu_A Thioredoxin, thioredoxi 38.8 39 0.0013 21.9 4.0 32 38-69 34-65 (122)
42 1nsw_A Thioredoxin, TRX; therm 38.8 54 0.0018 20.4 4.6 36 38-73 17-52 (105)
43 2vm1_A Thioredoxin, thioredoxi 38.6 35 0.0012 21.8 3.7 31 38-68 28-58 (118)
44 3fci_A UDG, uracil-DNA glycosy 38.4 59 0.002 25.8 5.6 72 10-93 87-170 (223)
45 2i1u_A Thioredoxin, TRX, MPT46 38.1 54 0.0018 21.0 4.6 36 38-73 30-65 (121)
46 1ti3_A Thioredoxin H, PTTRXH1; 38.0 46 0.0016 21.0 4.2 31 38-68 26-56 (113)
47 2vim_A Thioredoxin, TRX; thior 37.9 43 0.0015 20.8 4.0 31 38-68 19-49 (104)
48 3f3q_A Thioredoxin-1; His TAG, 37.8 41 0.0014 21.8 4.0 32 38-69 24-55 (109)
49 2dj3_A Protein disulfide-isome 37.7 71 0.0024 20.9 5.3 31 38-68 25-55 (133)
50 2f51_A Thioredoxin; electron t 37.5 40 0.0014 22.2 4.0 30 38-67 23-52 (118)
51 2l57_A Uncharacterized protein 37.5 35 0.0012 22.4 3.7 37 37-73 25-61 (126)
52 1syr_A Thioredoxin; SGPP, stru 37.4 43 0.0015 21.6 4.0 31 38-68 26-56 (112)
53 1dby_A Chloroplast thioredoxin 37.2 59 0.002 20.3 4.6 36 38-73 19-54 (107)
54 2pu9_C TRX-F, thioredoxin F-ty 37.0 45 0.0015 21.3 4.1 32 38-69 24-55 (111)
55 3tco_A Thioredoxin (TRXA-1); d 36.9 67 0.0023 19.9 4.9 36 38-73 21-56 (109)
56 2oe3_A Thioredoxin-3; electron 36.6 38 0.0013 22.3 3.7 32 38-69 30-61 (114)
57 1xfl_A Thioredoxin H1; AT3G510 36.5 50 0.0017 22.0 4.4 31 38-68 38-68 (124)
58 3qfa_C Thioredoxin; protein-pr 35.8 31 0.0011 22.7 3.1 32 38-69 31-62 (116)
59 2wwe_A Phosphoinositide-3-kina 35.5 20 0.00068 26.3 2.2 21 12-32 62-82 (127)
60 2dml_A Protein disulfide-isome 34.5 65 0.0022 21.0 4.7 36 38-73 35-70 (130)
61 3aps_A DNAJ homolog subfamily 34.5 63 0.0022 20.9 4.5 36 38-73 21-56 (122)
62 1w4v_A Thioredoxin, mitochondr 34.4 64 0.0022 21.0 4.6 36 38-73 31-66 (119)
63 3or5_A Thiol:disulfide interch 34.4 1E+02 0.0036 20.7 6.2 48 23-70 9-66 (165)
64 1v98_A Thioredoxin; oxidoreduc 34.1 81 0.0028 21.1 5.2 36 38-73 50-85 (140)
65 1fb6_A Thioredoxin M; electron 34.0 72 0.0025 19.7 4.6 36 38-73 18-53 (105)
66 1nho_A Probable thioredoxin; b 33.8 40 0.0014 20.1 3.3 33 42-74 5-37 (85)
67 1ep7_A Thioredoxin CH1, H-type 33.8 46 0.0016 21.1 3.7 34 38-71 24-57 (112)
68 3d22_A TRXH4, thioredoxin H-ty 33.6 49 0.0017 22.1 4.0 31 38-68 46-76 (139)
69 1t00_A Thioredoxin, TRX; redox 33.3 73 0.0025 20.1 4.6 36 38-73 23-58 (112)
70 1faa_A Thioredoxin F; electron 33.2 49 0.0017 21.6 3.8 32 38-69 37-68 (124)
71 2djj_A PDI, protein disulfide- 33.0 81 0.0028 20.2 4.9 33 37-69 24-56 (121)
72 3ul3_B Thioredoxin, thioredoxi 32.1 87 0.003 20.6 5.0 37 37-73 41-77 (128)
73 2l5l_A Thioredoxin; structural 31.9 71 0.0024 21.4 4.6 36 38-73 38-73 (136)
74 1r26_A Thioredoxin; redox-acti 30.5 52 0.0018 22.1 3.7 31 38-68 37-67 (125)
75 1ttz_A Conserved hypothetical 30.4 14 0.00047 24.4 0.5 45 42-90 3-47 (87)
76 2xc2_A Thioredoxinn; oxidoredu 27.9 50 0.0017 21.3 3.1 30 38-67 33-62 (117)
77 2wz9_A Glutaredoxin-3; protein 27.7 69 0.0024 22.1 4.0 31 38-68 32-62 (153)
78 3d6i_A Monothiol glutaredoxin- 27.5 68 0.0023 20.3 3.7 30 38-67 21-50 (112)
79 2ktr_A Sequestosome-1; autopha 27.5 61 0.0021 23.3 3.6 39 11-49 58-96 (117)
80 2kkc_A Sequestosome-1; P62, PB 27.2 64 0.0022 22.5 3.6 39 11-49 43-81 (102)
81 3hz4_A Thioredoxin; NYSGXRC, P 26.1 65 0.0022 21.8 3.5 36 38-73 24-59 (140)
82 2ppt_A Thioredoxin-2; thiredox 25.4 72 0.0024 22.3 3.7 36 38-73 64-99 (155)
83 1zma_A Bacterocin transport ac 24.9 1.2E+02 0.0041 19.4 4.6 32 38-69 29-60 (118)
84 1mek_A Protein disulfide isome 24.8 74 0.0025 20.0 3.5 31 38-68 24-54 (120)
85 1x5d_A Protein disulfide-isome 24.7 1.1E+02 0.0039 19.7 4.5 31 38-68 25-55 (133)
86 2ly8_A Budding yeast chaperone 24.6 40 0.0014 24.4 2.2 45 52-112 27-74 (121)
87 2j23_A Thioredoxin; immune pro 24.5 54 0.0018 21.6 2.8 32 38-69 33-64 (121)
88 1o73_A Tryparedoxin; electron 24.1 85 0.0029 20.7 3.8 43 25-68 16-58 (144)
89 2trc_P Phosducin, MEKA, PP33; 23.9 85 0.0029 23.7 4.1 30 39-68 121-150 (217)
90 2boo_A UDG, uracil-DNA glycosy 23.7 67 0.0023 25.9 3.6 73 10-94 106-190 (247)
91 3p2a_A Thioredoxin 2, putative 22.8 1.3E+02 0.0044 20.2 4.6 36 38-73 55-90 (148)
92 2dj1_A Protein disulfide-isome 22.8 65 0.0022 21.4 3.0 32 38-69 34-65 (140)
93 2ywm_A Glutaredoxin-like prote 22.3 1.4E+02 0.0046 21.7 4.9 29 40-68 138-166 (229)
94 2aya_A DNA polymerase III subu 22.1 2.1E+02 0.007 20.0 5.9 42 37-78 51-94 (128)
95 3uvt_A Thioredoxin domain-cont 21.3 71 0.0024 19.9 2.8 31 38-68 21-51 (111)
96 1x5e_A Thioredoxin domain cont 21.3 1.2E+02 0.0041 19.6 4.1 29 41-69 25-53 (126)
97 3cue_B Transport protein parti 21.1 3.3E+02 0.011 22.3 7.3 87 4-92 174-275 (283)
98 2npt_A Dual specificity mitoge 21.1 1.4E+02 0.0048 20.9 4.3 40 9-50 36-75 (106)
99 3ia1_A THIO-disulfide isomeras 20.9 1.1E+02 0.0036 20.5 3.8 44 24-67 7-59 (154)
100 1a0r_P Phosducin, MEKA, PP33; 20.4 1.4E+02 0.0048 23.2 4.8 32 38-69 133-164 (245)
No 1
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=99.89 E-value=1.8e-23 Score=164.89 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=73.5
Q ss_pred CccccccccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeeeccc
Q psy7228 2 TNRNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLSKNI 81 (151)
Q Consensus 2 ~l~dF~~L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~ 81 (151)
|++|| |+|||+||.+++++||+|+||+|+|++.+++++.|||+|+| |+++++.|||+|||++|+++|+|++....+.
T Consensus 90 ~~~dF--L~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~ 166 (188)
T 3sj5_A 90 RLVNF--LMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSKR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEK 166 (188)
T ss_dssp CHHHH--HHTHHHHHHHTTTTSTTCCCCEEEEEEEETTEEEEEEEETT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEE
T ss_pred CHHHH--HHHHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEEECCC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCC
Confidence 68999 99999999999999999999999999999999999999999 9999999999999999999999998776655
No 2
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=99.89 E-value=2.6e-23 Score=163.69 Aligned_cols=76 Identities=30% Similarity=0.569 Sum_probs=72.5
Q ss_pred CccccccccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeeec
Q psy7228 2 TNRNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLSK 79 (151)
Q Consensus 2 ~l~dF~~L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~~ 79 (151)
|++|| |+|||+||.+++++||+++||+|.|++.+++++.|||+|+|+|+++++.|||+|+|++|+++|+|++....
T Consensus 93 ~l~dF--L~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~~~A~~f~~~v~i~~~~~~ 168 (189)
T 3tfg_A 93 SLPEF--MENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFR 168 (189)
T ss_dssp SHHHH--HHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEEECSSSSCHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred CHHHH--HHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 68999 99999999999999999999999999999999999999999999999999999999999999999886643
No 3
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=99.88 E-value=1.2e-22 Score=158.97 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=70.4
Q ss_pred CccccccccCchH-HHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeee
Q psy7228 2 TNRNFVNFQNLDA-LHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLS 78 (151)
Q Consensus 2 ~l~dF~~L~sLD~-lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~ 78 (151)
|++|| |+|||+ ||.+++++||+|+||+|+|++.+++++.|||+|+|+ +++++.|||+|+|++|+++|+|++...
T Consensus 90 ~~~dF--L~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~-l~~~~~Gli~~~A~~f~~~v~i~~~~~ 164 (181)
T 2kii_A 90 DFTSL--VMGIHDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYSSPRR-LCFCAEGLLFGAAQHFQQKIQISHDTC 164 (181)
T ss_dssp SHHHH--HTTTTTTHHHHHHHHSSCSCCCEEEEEECSSSEEEEEEECTTC-CHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CHHHH--HHHHhHHHHHHHHHhCCCCCCCeeEEEECCCCEEEEEEecCCC-hHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 78999 999999 999999999999999999999999999999999996 999999999999999999999987443
No 4
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.01 E-value=5e-10 Score=88.66 Aligned_cols=65 Identities=49% Similarity=0.779 Sum_probs=58.3
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
+..||++||+||++ .+|.| ||+.||+.|.++.+....|.|+++|++.+|||++|+++|.|.+...
T Consensus 133 ~~v~Gd~VN~AaRLe~~a~~~~IlvS~~~~~~l~~~~~~~~~~~~~~~g~~~lKG~~~~~~vy~l~~~~~ 202 (219)
T 2wz1_A 133 YCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNT 202 (219)
T ss_dssp EEEESHHHHHHHHHHHTSCTTSEEEEHHHHHHTTSTTTCCTTEEEEEEEEECCTTCSSCEEEEEEEESCC
T ss_pred EEEECHHHHHHHHHHhcCCCCeEEECHHHHHHHhhhcccCCceEEEEeCCEEecCCCccEEEEEEeccCc
Confidence 68899999999777 67999 9999999998655556799999999999999999999999998775
No 5
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=98.98 E-value=1e-09 Score=95.36 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeeecccee---eechhhhhhhhhhc----ccCce-ehHHHHH
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLSKNISI---VNDIDFKVLAKSIF----SEGNI-TSDFVSR 109 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~~i---~~~~~~~~~~~s~~----~~~~i-~S~~ty~ 109 (151)
.+.+...+-.+. ..+..+.-+++++.+ ++..+.+-+.......+ ++.||++||+||++ .+|+| ||+.||+
T Consensus 264 GDa~mavfg~p~-~a~~~Al~m~~~l~~-~~~~l~iRIGIhtG~Vv~Gvydv~GdtVN~AsRLes~a~~g~I~vS~~t~~ 341 (407)
T 1y10_A 264 GDAVMLVCPDPA-PLLDTVLKLVEVVDT-DNNFPRLRAGVASGMAVSRAGDWFGSPVNVASRVTGVARPGAVLVADSVRE 341 (407)
T ss_dssp TTEEEEEESSHH-HHHHHHHHHHHHHHT-CTTSCCEEEEEEEEEEEEETTEEEEHHHHHHHHHHHHCCTTCEEEEHHHHH
T ss_pred cceEEEEECCHH-HHHHHHHHHHHHHHH-hCCCceEEEEEEEEEEEEecCccCCCHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 455555554444 367777777777665 44444554433222222 58999999999777 78999 9999999
Q ss_pred HhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 110 LLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 110 ~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
.|.... ....|.|+.||++.+|||..|+.+|.|.++..
T Consensus 342 ~l~~~~-~~~~f~~~~~G~v~lKGk~~~v~~y~l~~~~~ 379 (407)
T 1y10_A 342 ALGDAP-EADGFQWSFAGPRRLRGIRGDVRLFRVRRGAT 379 (407)
T ss_dssp SCCCC----CCCEEEEEEEECCTTCCSCEEEEEEEC---
T ss_pred HHhccc-ccCceEEEEeceEEeCCCCCceEEEEEcccCC
Confidence 997510 11589999999999999988899998887653
No 6
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=98.79 E-value=1.4e-08 Score=77.79 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=52.5
Q ss_pred eeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 83 IVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 83 i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
-+.-||++||+|+++ .+|.| ||+.||+.|.+ .|.|+.+|++.+|||.+|+++|-|.....
T Consensus 131 ~~~v~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~------~~~~~~~g~~~lkG~~~p~~vy~v~~~~~ 195 (198)
T 3r5g_A 131 DYTIIGREVNLASRLESASEAGEILISHETYSLIKD------VIMCRDKGQIAVKGFSRPVQIYQVVDSRR 195 (198)
T ss_dssp EEEEESHHHHHHHHHHHHCCTTCEEEEHHHHHHHTT------TSCEEEEEEECCTTCSSCEEEEEECCCTT
T ss_pred EEEEECcHHHHHHHHHhhCCCCcEEECHHHHHHhhc------CceEEEcccEEeecCCCcEEEEEEeeecc
Confidence 467799999999776 67999 99999999975 79999999999999999999998855443
No 7
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=98.79 E-value=4.6e-09 Score=80.26 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=51.1
Q ss_pred eeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCC
Q psy7228 83 IVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 147 (151)
Q Consensus 83 i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~ 147 (151)
-+..||++||+|+++ .+|.| ||+.||+.|.. ...|.|+.+|++.+|||++ +.+|+|....
T Consensus 124 ~~~v~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~----~~~~~~~~~g~~~lkG~~~-~~~y~l~~~~ 188 (190)
T 3et6_A 124 RFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRS----KERFEIRERGNITVKGKGT-MRTYLLSPLE 188 (190)
T ss_dssp EEEEESHHHHHHHHHHHTSCTTSEEEEHHHHHHCSC----GGGTCCCCEEEECCSSSSC-EEEEEECCC-
T ss_pred eEEecCcchhHHHHHHhcCCCCeEEECHHHHHHhCc----CCceEEEEcCCEEecCCCe-EEEEEEeccc
Confidence 358899999999776 67999 99999999976 5589999999999999987 7777777654
No 8
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=98.77 E-value=7.8e-10 Score=87.35 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=34.9
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
+..||++||+|+++ .+|+| ||+.||+.|.. ..|.|+++|++.+|||++|.++|.+.+.+.
T Consensus 147 y~v~Gd~VN~AaRle~~a~~g~I~vS~~~~~~l~~-----~~~~~~~~g~~~lKG~~~~~~~~~~~~~~~ 211 (220)
T 1ab8_A 147 YDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQT-----LGYTCTCRGIINVKGKGDLKTYFVNTEMSR 211 (220)
T ss_dssp EEEESHHHHHHHHHHHTCCTTCEEECHHHHHHHHH-----HTCCCCC---------------CCC-----
T ss_pred EEEECcHHHHHHHHHhcCCCCeEEECHHHHHHhhc-----CceEEEEeccEEecCCCceEEEEEecccCC
Confidence 68899999999777 57999 99999999974 259999999999999999999998877654
No 9
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=98.74 E-value=3.6e-08 Score=75.42 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=76.5
Q ss_pred ccCCEEEEEEEcCCCChhHHHHHHHHHHHHHccc-----ceeEEEeeeccce---eeechhhhhhhhhhc----ccCce-
Q psy7228 36 TDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL-----TCTFELGLSKNIS---IVNDIDFKVLAKSIF----SEGNI- 102 (151)
Q Consensus 36 ~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~-----~v~ve~~~~~~~~---i~~~~~~~~~~~s~~----~~~~i- 102 (151)
.-.+.+...+-+++. ....+.-+.+.+.+.-.. .+.+-+....... -+.-||++||+|+++ .+|.|
T Consensus 55 ~~GD~~~a~f~~~~~-A~~~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g~~~~~G~~Vn~AaRl~~~a~~~~I~ 133 (189)
T 3mr7_A 55 TTGDGMLARFDTAQA-ALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLEDGDIFGDAVNVAARLEAISEPGAIC 133 (189)
T ss_dssp EETTEEEEEESSHHH-HHHHHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEECSSCEESHHHHHHHHHHHHSCTTCEE
T ss_pred EeCCEEEEEeCCHHH-HHHHHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEECCeEEChHHHHHHHHHhhCCCCeEE
Confidence 335666666666553 666777777776653211 2333332222111 257899999999776 67999
Q ss_pred ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCc
Q psy7228 103 TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148 (151)
Q Consensus 103 ~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~ 148 (151)
||+.||+.|.. ...|.|+.+|++.+|||++|+.+|.|.....
T Consensus 134 vs~~~~~~l~~----~~~~~~~~~g~~~lkG~~~~v~vy~~~~~~~ 175 (189)
T 3mr7_A 134 VSDIVHQITQD----RVSEPFTDLGLQKVKNITRPIRVWQWVPDAD 175 (189)
T ss_dssp EEHHHHHHHTT----TCCSCCEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred ECHHHHHhhcc----ccCceEEECCCEEeCCcCCcEEEEEEccccc
Confidence 99999999976 4469999999999999999999999876553
No 10
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=98.71 E-value=1.6e-08 Score=80.11 Aligned_cols=61 Identities=23% Similarity=0.155 Sum_probs=53.1
Q ss_pred eeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEec---CCCCceeEEEeecCC
Q psy7228 83 IVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMK---GKSEPMEVWFLSRGK 147 (151)
Q Consensus 83 i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mk---gk~~~~~~~~l~~~~ 147 (151)
-+..||++||+||++ .+|+| ||++||+.|.+ ...|.|++||++.+| |+..|+.+|+|....
T Consensus 128 ~~~~~Gd~VN~AaRle~~a~~~~I~vS~~~~~~l~~----~~~~~~~~~g~~~lk~~~~~~~~~~~y~l~~~~ 196 (225)
T 3uvj_A 128 RYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKD----CPGFVFTPRSREELPPNFPSEIPGICHFLDAYQ 196 (225)
T ss_dssp EEEEESHHHHHHHHHHHTSCTTCEEECHHHHHHHTT----STTEEEEECCSTTSCTTSCTTSCCCCEEEEEEC
T ss_pred eEEEECcHHHHHHHHHhcCCCCeEEECHHHHHhhcC----CCceEEEEcCcEEecCCCCCCCceEEEEEeccc
Confidence 468899999999777 68999 99999999986 568999999999997 456788899998765
No 11
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=98.71 E-value=1.5e-08 Score=78.10 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=71.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE--EEeeecc---ceeeechhhhhhhhhhc----ccCce-ehHHH
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF--ELGLSKN---ISIVNDIDFKVLAKSIF----SEGNI-TSDFV 107 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v--e~~~~~~---~~i~~~~~~~~~~~s~~----~~~~i-~S~~t 107 (151)
.+.+...+-++.. -...+.-+.+.+.+ ++..+.| .....-- ..-+.-||++||+|+++ .+|.| +|+.|
T Consensus 67 GD~~ma~f~~p~~-A~~~Al~~~~~l~~-~~l~~riGi~~G~v~~g~ig~~~~~~G~~Vn~AaRl~~~a~~g~IlvS~~~ 144 (184)
T 1ybt_A 67 GDGFVATFTSPSA-AIACADDIVDAVAA-LGIEVRIGIHAGEVEVRDASHGTDVAGVAVHIGARVCALAGPSEVLVSSTV 144 (184)
T ss_dssp SSSEEEEESCHHH-HHHHHHHHHHHHHT-TTCCEEEEEEEEEEEEEECSSCEEEESHHHHHHHHHHHHSCTTCEEEEHHH
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHHHHh-cCCcEEEEEEEeEEEEEecCCCceEECcHHHHHHHHHhcCCCCEEEECHHH
Confidence 4556666655542 55566666665554 2322222 1111100 11277899999999777 67999 99999
Q ss_pred HHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCcc
Q psy7228 108 SRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 149 (151)
Q Consensus 108 y~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~~ 149 (151)
|+.|. ...|.|+.+|.+.+||+++|+.+|-|......
T Consensus 145 ~~~l~-----~~~~~~~~~g~~~lkG~~~~~~vy~l~~~~~~ 181 (184)
T 1ybt_A 145 RDIVA-----GSRHRFAERGEQELKGVPGRWRLCVLMRDDAT 181 (184)
T ss_dssp HHHTT-----TSSCCEEEEEEECCTTSSSCEEEEEECCCC--
T ss_pred HHhhc-----ccCceEEEcCCEEecCCCCcEEEEEEecCCCC
Confidence 99994 24899999999999999999999999876543
No 12
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=98.70 E-value=6.9e-09 Score=81.87 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=52.6
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCC
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 147 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~ 147 (151)
+.-||++||+||++ .+|.| ||+.||+.|... ....|.|+.+|.+.+|||++|+++|.|.+-.
T Consensus 154 ~~v~Gd~VN~AaRle~~a~~g~IlvS~~~~~~l~~~--~~~~~~~~~~g~~~lkG~~~~v~vy~l~~~~ 220 (235)
T 1fx2_A 154 YDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAE--DRKQIDVTALGDVALRGVSDPVKMYQLNTVP 220 (235)
T ss_dssp EEEESHHHHHHHHHHHTCCTTCEEEEHHHHHTSCHH--HHHTCCEEEEEEECCTTCSSCEEEEEECCST
T ss_pred eEEECHHHHHHHHHHhhcCCCEEEECHHHHHHHhhh--cccCceeEecccEEecccCCceEEEEEeccC
Confidence 67899999999777 67999 999999999630 0147999999999999999999999997644
No 13
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=98.64 E-value=1.4e-08 Score=79.28 Aligned_cols=58 Identities=26% Similarity=0.236 Sum_probs=48.1
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCC
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 147 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~ 147 (151)
+.-||++||+|+++ .+|.| ||+.||+.|.+ .|.|+++|.+.+|||+++.+||+++++.
T Consensus 125 ~~v~G~~Vn~AaRle~~a~~g~I~vs~~~~~~l~~------~~~~~~~g~~~lkG~~~~~~y~l~~~~~ 187 (204)
T 1yk9_A 125 YCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD------DFVLRERGHINVKGKGVMRTWYLIGRKV 187 (204)
T ss_dssp CCEEEHHHHHTTHHHHSCSTTCEEBCHHHHHCCTT------CEEEEECCCCCCSSSSSCCCCEEEEEEC
T ss_pred EEEEChHHHHHHHHHhcCCCCeEEECHHHHHHhhc------CeeEEEcceEEecCCCccEEEEEEeccC
Confidence 56789999999776 67999 99999999965 7999999999999998655555555443
No 14
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=98.63 E-value=8.2e-08 Score=74.74 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred eeeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCC
Q psy7228 82 SIVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 147 (151)
Q Consensus 82 ~i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~ 147 (151)
.-+.-||++||+|+++ .+|.| ||+.||+.+.. .|.|+..|.+.+||+.+|+++|-|....
T Consensus 132 ~~~~v~G~~Vn~AaRl~~~a~~~~I~vs~~~~~~l~~------~~~~~~~~~~~lkG~~~~~~vy~v~~~~ 196 (208)
T 2w01_A 132 TKYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAGD------RVHVNGNRTVQPKGVKDPVVIWDVAGVG 196 (208)
T ss_dssp EEEEEESHHHHHHHHHHHTCCTTCEEEEHHHHHHHCT------TEEEEEEEEECCTTCSSCEEEEEEEEEC
T ss_pred eEEEEECHHHHHHHHHHccCCCCeEEECHHHHHhhhc------ceEecccceEeecCCCCcEEEEEEccCC
Confidence 3467799999999776 67999 99999999975 7999999999999999999988776544
No 15
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=98.61 E-value=4.4e-08 Score=77.21 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=51.3
Q ss_pred eeeechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEeccceEecCCCCceeEEEeecCCcc
Q psy7228 82 SIVNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 149 (151)
Q Consensus 82 ~i~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG~v~mkgk~~~~~~~~l~~~~~~ 149 (151)
.-+.-||++||+|+++ .+|+| ||+.||+.|.. +.|+.+|.+.+|||++|+++|.|...+.+
T Consensus 153 ~~y~v~Gd~VN~AaRLe~~a~~g~IlvS~~~~~~l~~-------~~~~~~g~~~lKG~~~~v~vy~v~~~~~~ 218 (219)
T 1wc3_A 153 SDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYVPD-------EEIIKREFLELKGIDEPVMTCVINPNMLN 218 (219)
T ss_dssp EEEEEESHHHHHHHHHHHHSCTTEEEEEHHHHTTSCG-------GGEEEEEEECCTTCSSCEEEEEECSCC--
T ss_pred eEEEEECHHHHHHHHHHhcCCCCeEEECHHHHHhhcc-------cceeEeeeEEecccCCcEEEEEEcCccCC
Confidence 3467799999999776 67999 99999999864 26899999999999999999999876543
No 16
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=97.92 E-value=1.3e-06 Score=69.40 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=42.4
Q ss_pred eechhhhhhhhhhc----ccCce-ehHHHHHHhcCCCCCCCCceEEecc----ceEecCCCCceeEEEeecC
Q psy7228 84 VNDIDFKVLAKSIF----SEGNI-TSDFVSRLLCSPDNEDPQFQFEYRG----PVTMKGKSEPMEVWFLSRG 146 (151)
Q Consensus 84 ~~~~~~~~~~~s~~----~~~~i-~S~~ty~~l~~~~~~~~~f~~~~RG----~v~mkgk~~~~~~~~l~~~ 146 (151)
+..||++||+||++ .+|.| ||+.||+.|.+ .|.|++.+ .+.+|||+ +.+|+|..+
T Consensus 149 y~v~Gd~VN~AaRLe~~a~~g~IlvS~~t~~~l~~------~f~~~~~~~~~r~~~lKg~~--v~~Y~l~~~ 212 (220)
T 1azs_A 149 FDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG------DYEVEPGCGGERNAYLKEHS--IETFLILRC 212 (220)
T ss_dssp CEEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTT------CSCEEECCGGGTCHHHHHTT--CCCEEEC--
T ss_pred EEEEchHHHHHHHHHhcCCCCeEEECHHHHHhhcC------ceEEEECcCccccceecCCc--eEEEEEecc
Confidence 67899999999777 67999 99999999964 79999953 46899986 344555443
No 17
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=62.65 E-value=18 Score=23.22 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=28.1
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
++.-+.+.++++.++-|.-+.-.++.+|+.|.
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~ 48 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN 48 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC
Confidence 35678889999999999999999999999985
No 18
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=54.77 E-value=15 Score=24.55 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=28.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLT 70 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~ 70 (151)
+.-+.+.++++.+|-|..+.-.++.+|+.+..-
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~ 52 (105)
T 3zzx_A 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDV 52 (105)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTE
T ss_pred CCEEEEEEECCCCCCccCCCcchhhhhhccCCe
Confidence 456788899999999999999999999998753
No 19
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=54.12 E-value=18 Score=21.58 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=26.9
Q ss_pred EEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 41 LVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 41 l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.+.++++.++.|.-+.-.++.+++.++..+.+
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~ 34 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEF 34 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEE
Confidence 457788889999999999999999998755433
No 20
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=50.90 E-value=20 Score=22.53 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-..+.++++.++.|.-+...++.+|+.+..
T Consensus 20 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 51 (105)
T 3m9j_A 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN 51 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT
T ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHHccC
Confidence 45578889999999999999999999999865
No 21
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=50.68 E-value=11 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=32.3
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHcccceeEEE-eeeccceeeechhhh
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFEL-GLSKNISIVNDIDFK 90 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~-~~~~~~~i~~~~~~~ 90 (151)
...|..+.+++|..+.-+|+.+|+.++ ++++. +...+.++...+|.+
T Consensus 32 vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~ 79 (107)
T 2fgx_A 32 LVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR 79 (107)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC
Confidence 566888899999999999999999886 33332 222344455555543
No 22
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=49.22 E-value=32 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHcccceeEEEeeeccceeeechhhhhhhh
Q psy7228 52 LEHIVIGIVKVSWNKHQLTCTFELGLSKNISIVNDIDFKVLAK 94 (151)
Q Consensus 52 l~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~~i~~~~~~~~~~~ 94 (151)
++.|+-|+|+|+-...+-+++|+-.....-++...|...|..-
T Consensus 139 y~~f~cGiIrGaL~~~g~~~~Vta~~~~~t~f~Ikf~~~v~~r 181 (188)
T 2j3w_B 139 CAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIAR 181 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESSSEEEEEEECHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceEEEEEeCCCEEEEEEecHHHHHH
Confidence 7889999999999999988777766666778888888877654
No 23
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=47.39 E-value=34 Score=27.98 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=49.6
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEE-ccCCEEEEEE---------EcCCC--ChhHHHHHHHHHHHHHcccceeEEEe
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTE-TDDGALVLHY---------YSDRP--GLEHIVIGIVKVSWNKHQLTCTFELG 76 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~-~~~~~l~L~Y---------~S~R~--Gl~~~~~GlI~~~Ak~f~~~v~ve~~ 76 (151)
.||-+|..++...+|+..+|. =..+. -..+-|.|-. .|++. |...|..-+|++++++-
T Consensus 124 pSL~NIyKEL~~Dlpg~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~~GWe~fTd~vI~~l~~~~--------- 194 (268)
T 3cxm_A 124 PSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHH--------- 194 (268)
T ss_dssp HHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhhccCCCCCCCCCcHHHHhcCeEeEeceEEEeCCCCCccCCCcChHHHHHHHHHHHHhhC---------
Confidence 468889999999999988873 11111 1123333322 14554 89999999999999842
Q ss_pred eeccceeeechhhhhhhh
Q psy7228 77 LSKNISIVNDIDFKVLAK 94 (151)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~ 94 (151)
.+..++.+||..+-..
T Consensus 195 --~~~vVFiLWG~~Aq~k 210 (268)
T 3cxm_A 195 --PNRLVFLLWGGYAQQK 210 (268)
T ss_dssp --SSCCEEEEESHHHHGG
T ss_pred --CCCeEEEEeCHHHHhh
Confidence 2356899999876333
No 24
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=47.11 E-value=33 Score=21.65 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=30.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 22 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~ 57 (111)
T 3gnj_A 22 GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGF 57 (111)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEE
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEE
Confidence 456788899999999999999999999999764433
No 25
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=46.49 E-value=37 Score=21.19 Aligned_cols=37 Identities=5% Similarity=0.177 Sum_probs=30.6
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
.+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 54 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADI 54 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEE
Confidence 3566788889999999999999999999999765443
No 26
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=46.03 E-value=43 Score=21.20 Aligned_cols=36 Identities=6% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 25 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~ 60 (115)
T 1thx_A 25 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKV 60 (115)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEE
T ss_pred CceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEE
Confidence 456788899999999999999999999999755444
No 27
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=45.45 E-value=44 Score=20.85 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 20 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 55 (107)
T 2i4a_A 20 SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTV 55 (107)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEE
Confidence 556788888999999999999999999999754443
No 28
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=45.15 E-value=29 Score=21.42 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=27.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-..+.++++.++.|.-+...++.+++.+..
T Consensus 16 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 47 (104)
T 2e0q_A 16 HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ 47 (104)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHcCC
Confidence 45678888899999999999999999999865
No 29
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=44.93 E-value=46 Score=20.89 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 20 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 55 (108)
T 2trx_A 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTV 55 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEE
Confidence 456788899999999999999999999999755444
No 30
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=43.34 E-value=30 Score=22.03 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=26.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+|+.+.
T Consensus 21 ~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~ 51 (107)
T 1gh2_A 21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP 51 (107)
T ss_dssp TSCEEEEEECSSCHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEEECCCChhhHHHHHHHHHHHHHCC
Confidence 4567888999999999999999999999984
No 31
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=43.20 E-value=31 Score=20.71 Aligned_cols=33 Identities=12% Similarity=-0.080 Sum_probs=27.1
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHcccceeEE
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFE 74 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve 74 (151)
.+.|+++.++.|.-+.-.++.+++.+...+.+.
T Consensus 6 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~ 38 (85)
T 1fo5_A 6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVE 38 (85)
T ss_dssp EEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEE
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHcCCceEEE
Confidence 567888899999999999999999997555443
No 32
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=43.15 E-value=36 Score=21.21 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=28.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccccee
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCT 72 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ 72 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.
T Consensus 20 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~ 54 (106)
T 1xwb_A 20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVV 54 (106)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEE
T ss_pred CCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeE
Confidence 55678888999999999999999999999864443
No 33
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=42.87 E-value=67 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=31.6
Q ss_pred ccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 36 TDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 36 ~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
..+.-+.+.++++.++.|.-+.-.++.+++.|...+.+
T Consensus 49 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~ 86 (141)
T 3hxs_A 49 LGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYI 86 (141)
T ss_dssp CCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEE
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEE
Confidence 34567888999999999999999999999999765444
No 34
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=42.18 E-value=52 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=25.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.+.++.++.|.-....++.+++.|.
T Consensus 25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~ 55 (136)
T 1zzo_A 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHP 55 (136)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEEcCCChhHHHHHHHHHHHHHHcC
Confidence 3456777888888888888888999998887
No 35
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=40.52 E-value=49 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 40 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~ 75 (128)
T 2o8v_B 40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTV 75 (128)
T ss_dssp SSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEE
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEE
Confidence 456788899999999999999999999999755443
No 36
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=39.73 E-value=56 Score=20.25 Aligned_cols=36 Identities=3% Similarity=0.048 Sum_probs=29.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 18 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 53 (109)
T 2yzu_A 18 HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLV 53 (109)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEE
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEE
Confidence 456778888999999999999999999999754443
No 37
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=39.71 E-value=36 Score=27.15 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred cCchHHHHHHhhhCCCCCCCee-EEEE-ccCCEEEEEE---------EcCC-CChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPSF-RCTE-TDDGALVLHY---------YSDR-PGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~PsF-~~~~-~~~~~l~L~Y---------~S~R-~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
-||-+|..+++..+|+..+|.= ..+. -..+-|.|-. .|++ .|...|..-+|+.++++-
T Consensus 89 pSL~NI~kEL~~dl~g~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~---------- 158 (231)
T 2j8x_A 89 PSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERL---------- 158 (231)
T ss_dssp HHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHHHHhcCCCCCCCCCCchhHHhcCcEeeeeeEEEeCCCCCccccCChHHHHHHHHHHHHhcC----------
Confidence 4688899999999999888841 1111 1223333322 1332 389999999999999863
Q ss_pred eccceeeechhhhhhhh
Q psy7228 78 SKNISIVNDIDFKVLAK 94 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~~~ 94 (151)
+..++.+||-.+-..
T Consensus 159 --~~vVFiLWG~~Aq~k 173 (231)
T 2j8x_A 159 --KACVFMLWGAKAGDK 173 (231)
T ss_dssp --SSCEEEEESHHHHGG
T ss_pred --CCeEEEEcCHHHHHH
Confidence 345899999876333
No 38
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=39.52 E-value=45 Score=24.51 Aligned_cols=37 Identities=11% Similarity=-0.076 Sum_probs=28.0
Q ss_pred EEEEEE-cCCCChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 41 LVLHYY-SDRPGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 41 l~L~Y~-S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
+.++|+ +..+++|..+.-.|+.+++.|...++|+...
T Consensus 3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~v~v~~~p 40 (208)
T 3kzq_A 3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVV 40 (208)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred eEEEEEECCCCchhhhhhHHHHHHHHhCCCCceEEEEe
Confidence 345544 4577889989999999999998777777643
No 39
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=39.25 E-value=38 Score=21.95 Aligned_cols=31 Identities=0% Similarity=-0.137 Sum_probs=26.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+++.+.
T Consensus 19 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~ 49 (110)
T 2l6c_A 19 LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP 49 (110)
T ss_dssp CSEEEEEEECSSCSTHHHHHHHHHHHHTTCT
T ss_pred CCCEEEEEECCCCHhHHHHHHHHHHHHHHCC
Confidence 3457788999999999999999999998875
No 40
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=38.98 E-value=58 Score=20.93 Aligned_cols=36 Identities=6% Similarity=0.165 Sum_probs=29.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 17 ~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~ 52 (112)
T 2voc_A 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKI 52 (112)
T ss_dssp SSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEE
Confidence 456788899999999999999999999999755444
No 41
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=38.83 E-value=39 Score=21.93 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=27.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-..+.++++.++.|.-+.-.++.+++.|..
T Consensus 34 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~ 65 (122)
T 2vlu_A 34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPN 65 (122)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
Confidence 45578888899999999999999999999865
No 42
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=38.77 E-value=54 Score=20.44 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 17 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~ 52 (105)
T 1nsw_A 17 DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTV 52 (105)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 345778888999999999999999999998765443
No 43
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=38.64 E-value=35 Score=21.82 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+++.|.
T Consensus 28 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~ 58 (118)
T 2vm1_A 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFP 58 (118)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCC
Confidence 4557888889999999999999999999986
No 44
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=38.40 E-value=59 Score=25.79 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=48.9
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEE-ccCCEEEEEE---------EcCC-CChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTE-TDDGALVLHY---------YSDR-PGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~-~~~~~l~L~Y---------~S~R-~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
.||-+|..+++..+|+..+|. =..+. -..+-|.|-. .|++ .|...|..-+|+.++++-
T Consensus 87 pSL~NI~kEL~~dl~g~~~p~~G~L~~WA~QGVLLLNt~LTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~---------- 156 (223)
T 3fci_A 87 PSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNS---------- 156 (223)
T ss_dssp HHHHHHHHHHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhccCCCCCCCccchhHHhCCEEEEeeEEEEeCCCCCccccCChHHHHHHHHHHHHhcC----------
Confidence 467889999998998888774 11111 1233343332 2455 599999999999999853
Q ss_pred eccceeeechhhhhhh
Q psy7228 78 SKNISIVNDIDFKVLA 93 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~~ 93 (151)
+..++.+||.-+-.
T Consensus 157 --~~vVFiLWG~~Aq~ 170 (223)
T 3fci_A 157 --NGLVFLLWGSYAQK 170 (223)
T ss_dssp --CSCEEEEESHHHHH
T ss_pred --CCeEEEEECHHHHh
Confidence 35589999986643
No 45
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=38.10 E-value=54 Score=21.03 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+|+.+...+.+
T Consensus 30 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 65 (121)
T 2i1u_A 30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTV 65 (121)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 456788899999999999999999999998655444
No 46
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=37.96 E-value=46 Score=21.05 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=26.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+++.+.
T Consensus 26 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~ 56 (113)
T 1ti3_A 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP 56 (113)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 4567788889999999999999999999986
No 47
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=37.92 E-value=43 Score=20.77 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=26.3
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+.
T Consensus 19 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~ 49 (104)
T 2vim_A 19 GRLIVVDFFAQWCGPCRNIAPKVEALAKEIP 49 (104)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHCC
Confidence 4457788889999999999999999999885
No 48
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=37.84 E-value=41 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+..
T Consensus 24 ~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~ 55 (109)
T 3f3q_A 24 DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ 55 (109)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC
Confidence 45678889999999999999999999999864
No 49
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.73 E-value=71 Score=20.93 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-+.-.++.+|+.+.
T Consensus 25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~ 55 (133)
T 2dj3_A 25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK 55 (133)
T ss_dssp TSEEEEEECCTTCSHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhc
Confidence 5678888999999999999999999999986
No 50
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=37.50 E-value=40 Score=22.24 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=26.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKH 67 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f 67 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+
T Consensus 23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~ 52 (118)
T 2f51_A 23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN 52 (118)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHC
Confidence 445778889999999999999999999988
No 51
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=37.48 E-value=35 Score=22.44 Aligned_cols=37 Identities=3% Similarity=-0.073 Sum_probs=29.7
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
.+.-+.+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~ 61 (126)
T 2l57_A 25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNI 61 (126)
T ss_dssp SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEE
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEE
Confidence 3456788889999999999999999999998644443
No 52
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=37.39 E-value=43 Score=21.56 Aligned_cols=31 Identities=3% Similarity=0.126 Sum_probs=26.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+++.+.
T Consensus 26 ~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~ 56 (112)
T 1syr_A 26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYT 56 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC
Confidence 4567888899999999999999999999885
No 53
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=37.24 E-value=59 Score=20.32 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=28.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 54 (107)
T 1dby_A 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKC 54 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEE
Confidence 445778888999999999999999999998755443
No 54
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=37.04 E-value=45 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=27.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-..+.++++.++.|.-+.-.++.+++.+..
T Consensus 24 ~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~ 55 (111)
T 2pu9_C 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD 55 (111)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC
Confidence 45678888999999999999999999999864
No 55
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=36.85 E-value=67 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=30.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 56 (109)
T 3tco_A 21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVF 56 (109)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEE
T ss_pred CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceE
Confidence 556788889999999999999999999999765443
No 56
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=36.59 E-value=38 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+..
T Consensus 30 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~ 61 (114)
T 2oe3_A 30 NDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD 61 (114)
T ss_dssp CSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
Confidence 45678888999999999999999999999865
No 57
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=36.51 E-value=50 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=26.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-+.-.++.+++.|.
T Consensus 38 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~ 68 (124)
T 1xfl_A 38 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68 (124)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC
Confidence 4567888899999999999999999999986
No 58
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=35.82 E-value=31 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=27.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.+.++++.++-|.-+.-.++.+|+.|..
T Consensus 31 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~ 62 (116)
T 3qfa_C 31 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN 62 (116)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
Confidence 45678889999999999999999999999865
No 59
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=35.52 E-value=20 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.8
Q ss_pred chHHHHHHhhhCCCCCCCeeE
Q psy7228 12 LDALHDHLGTLYPGMRAPSFR 32 (151)
Q Consensus 12 LD~lH~~v~~~yp~~~~PsF~ 32 (151)
+..+|.++++.||...+|.|-
T Consensus 62 F~~LH~qLkk~Fp~~~LP~fP 82 (127)
T 2wwe_A 62 FSKLHSQLQKQFASLTLPEFP 82 (127)
T ss_dssp HHHHHHHHHHHTTTSCCCCCC
T ss_pred HHHHHHHHHHhCccccCCCCC
Confidence 477999999999999999993
No 60
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.53 E-value=65 Score=21.03 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~ 70 (130)
T 2dml_A 35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKV 70 (130)
T ss_dssp SSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEE
T ss_pred CCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEE
Confidence 456788999999999999999999999998765444
No 61
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=34.46 E-value=63 Score=20.85 Aligned_cols=36 Identities=8% Similarity=-0.038 Sum_probs=29.4
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+|+.+...+.+
T Consensus 21 ~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~ 56 (122)
T 3aps_A 21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRA 56 (122)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 445788889999999999999999999998754433
No 62
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=34.44 E-value=64 Score=21.03 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=29.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-+.+.++++.++.|.-+...++.+++.+...+.+
T Consensus 31 ~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~ 66 (119)
T 1w4v_A 31 ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVM 66 (119)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 445788888999999999999999999998655443
No 63
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=34.41 E-value=1e+02 Score=20.65 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCCCCCCeeEEEEccC----------CEEEEEEEcCCCChhHHHHHHHHHHHHHcccc
Q psy7228 23 YPGMRAPSFRCTETDD----------GALVLHYYSDRPGLEHIVIGIVKVSWNKHQLT 70 (151)
Q Consensus 23 yp~~~~PsF~~~~~~~----------~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~ 70 (151)
-++...|.|.+...+. .-+.|.+.+..++.|.-..-.+..+++.|...
T Consensus 9 ~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~ 66 (165)
T 3or5_A 9 ARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR 66 (165)
T ss_dssp CCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC
Confidence 3566778887775442 34677777888888888888888888888653
No 64
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=34.07 E-value=81 Score=21.10 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=29.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
.+.+.++++++.++.|.-+.-.++.+++.|...+.+
T Consensus 50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~ 85 (140)
T 1v98_A 50 APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKV 85 (140)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEE
Confidence 334889999999999999999999999999754443
No 65
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=34.04 E-value=72 Score=19.66 Aligned_cols=36 Identities=3% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 53 (105)
T 1fb6_A 18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAV 53 (105)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEE
Confidence 445778888999889999999999999998765443
No 66
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=33.81 E-value=40 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=26.5
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHcccceeEE
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFE 74 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve 74 (151)
.+.|+++.++.|.-+.-.++.+++.+...+.+.
T Consensus 5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~ 37 (85)
T 1nho_A 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVE 37 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEE
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCCeEEE
Confidence 456788888999999999999999987555443
No 67
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=33.80 E-value=46 Score=21.06 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=27.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccce
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTC 71 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v 71 (151)
+.-..+.++++.++.|.-+.-.++.+++.|...+
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~ 57 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKV 57 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCe
Confidence 4557788889999999999999999999987443
No 68
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=33.63 E-value=49 Score=22.10 Aligned_cols=31 Identities=3% Similarity=-0.072 Sum_probs=27.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-..-.++.+++.+.
T Consensus 46 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~ 76 (139)
T 3d22_A 46 GKIVLANFSARWCGPSRQIAPYYIELSENYP 76 (139)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC
Confidence 4567888999999999999999999999985
No 69
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=33.31 E-value=73 Score=20.10 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=28.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 23 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 58 (112)
T 1t00_A 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEI 58 (112)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEE
Confidence 445788888999999999999999999998655443
No 70
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=33.19 E-value=49 Score=21.57 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=27.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-..+.++++.++.|.-..-.++.+++.+..
T Consensus 37 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~ 68 (124)
T 1faa_A 37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD 68 (124)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC
Confidence 45678888899999999999999999999863
No 71
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=33.01 E-value=81 Score=20.19 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=28.7
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
.+.-..+.++++.++.|.-+.-.++.+|+.+..
T Consensus 24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 56 (121)
T 2djj_A 24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAK 56 (121)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhh
Confidence 355688899999999999999999999999965
No 72
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=32.07 E-value=87 Score=20.63 Aligned_cols=37 Identities=5% Similarity=-0.047 Sum_probs=30.3
Q ss_pred cCCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 37 DDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
.+.-+.+.++++.++-|.-....++.+++.+...+.+
T Consensus 41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~ 77 (128)
T 3ul3_B 41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYL 77 (128)
T ss_dssp CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEE
Confidence 3566788899999999999999999999999755433
No 73
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=31.89 E-value=71 Score=21.40 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+|+.|...+.+
T Consensus 38 ~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~ 73 (136)
T 2l5l_A 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVI 73 (136)
T ss_dssp SSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 456788899999999999999999999999755443
No 74
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=30.55 E-value=52 Score=22.15 Aligned_cols=31 Identities=10% Similarity=-0.114 Sum_probs=26.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+++.+.
T Consensus 37 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~ 67 (125)
T 1r26_A 37 DILTVAWFTAVWCGPCKTIERPMEKIAYEFP 67 (125)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT
T ss_pred CCEEEEEEECCcCHhHHHHHHHHHHHHHHCC
Confidence 4567888999999999999999999999985
No 75
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=30.43 E-value=14 Score=24.37 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=31.0
Q ss_pred EEEEEcCCCChhHHHHHHHHHHHHHcccceeEEEeeeccceeeechhhh
Q psy7228 42 VLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTFELGLSKNISIVNDIDFK 90 (151)
Q Consensus 42 ~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~~i~~~~~~~ 90 (151)
...|.++.+|.|..+.-+++.++..++ .+|++ ..+.++...+|.+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~~--~~vdi--d~~~~l~~~~g~~ 47 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGAF--FSVFI--DDDAALESAYGLR 47 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCCE--EEEEC--TTCHHHHHHHTTT
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhhe--EEEEC--CCCHHHHHHhCCC
Confidence 456888899999999999998887543 22333 3455566666664
No 76
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=27.95 E-value=50 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKH 67 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f 67 (151)
+.-+.+.++++.++.|.-+.-.++.+|+.+
T Consensus 33 ~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~ 62 (117)
T 2xc2_A 33 NKLVVVDFFATWCGPCKTIAPLFKELSEKY 62 (117)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHc
Confidence 455788889999999999999999999887
No 77
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=27.73 E-value=69 Score=22.08 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=26.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+.
T Consensus 32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~ 62 (153)
T 2wz9_A 32 KSLLVVHFWAPWAPQCAQMNEVMAELAKELP 62 (153)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHcC
Confidence 4567888889999999999999999999985
No 78
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=27.53 E-value=68 Score=20.32 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.2
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKH 67 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f 67 (151)
+.-..+.++++.++.|.-+.-.++.+++.+
T Consensus 21 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 50 (112)
T 3d6i_A 21 DKLIVLYFHTSWAEPCKALKQVFEAISNEP 50 (112)
T ss_dssp TCCEEEEEECCC--CHHHHHHHHHHHHHCG
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHhc
Confidence 456788889999999999999999999986
No 79
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=27.50 E-value=61 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=32.8
Q ss_pred CchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCC
Q psy7228 11 NLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDR 49 (151)
Q Consensus 11 sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R 49 (151)
+++.+...|+..||.+....|.+...++++=.+...|+-
T Consensus 58 s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDe 96 (117)
T 2ktr_A 58 PSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDE 96 (117)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHH
T ss_pred CHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHH
Confidence 667789999999999998889999988777667766665
No 80
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=27.17 E-value=64 Score=22.45 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=32.8
Q ss_pred CchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCC
Q psy7228 11 NLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDR 49 (151)
Q Consensus 11 sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R 49 (151)
+++.+...|+..||.+....|.+...++++=.+.-.|+-
T Consensus 43 s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDe 81 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDE 81 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHH
T ss_pred cHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHH
Confidence 577889999999999998889999988777667766665
No 81
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=26.09 E-value=65 Score=21.79 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=29.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-+.+.++++.++.|.-+.-.+..+|+.+...+.+
T Consensus 24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~ 59 (140)
T 3hz4_A 24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVF 59 (140)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEE
Confidence 456788888999999999999999999999765443
No 82
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=25.39 E-value=72 Score=22.33 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=29.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-..+.++++.++.|.-+.-.++.+|+.|...+.+
T Consensus 64 ~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~ 99 (155)
T 2ppt_A 64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRL 99 (155)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEE
Confidence 456788889999999999999999999999754443
No 83
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=24.94 E-value=1.2e+02 Score=19.45 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=27.0
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+....+.++++.++.|.-+.-.++.+++.++.
T Consensus 29 ~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~ 60 (118)
T 1zma_A 29 KETATFFIGRKTCPYCRKFAGTLSGVVAETKA 60 (118)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCCccHHHHHHHHHHHHHhcCC
Confidence 34578888999999999999999999998763
No 84
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=24.79 E-value=74 Score=20.02 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=27.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+.
T Consensus 24 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 54 (120)
T 1mek_A 24 HKYLLVEFYAPWCGHCKALAPEYAKAAGKLK 54 (120)
T ss_dssp CSEEEEEEECSSCSTTSTTHHHHHHHHHTTT
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHHh
Confidence 4567888999999999999999999999885
No 85
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.67 E-value=1.1e+02 Score=19.74 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.++.+|+.+.
T Consensus 25 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~ 55 (133)
T 1x5d_A 25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVK 55 (133)
T ss_dssp SSEEEEEEECTTCHHHHTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHHHHhhcHHHHHHHHHHH
Confidence 4567888999999999999999999999986
No 86
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=24.60 E-value=40 Score=24.39 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHcccceeEEEeeeccceeeechhhhhhhh-hhcccCce--ehHHHHHHhc
Q psy7228 52 LEHIVIGIVKVSWNKHQLTCTFELGLSKNISIVNDIDFKVLAK-SIFSEGNI--TSDFVSRLLC 112 (151)
Q Consensus 52 l~~~~~GlI~~~Ak~f~~~v~ve~~~~~~~~i~~~~~~~~~~~-s~~~~~~i--~S~~ty~~l~ 112 (151)
+..-+...++.+++.| ++++|-|+-..+ -. .+|-+ ||++.|+.+.
T Consensus 27 fq~~Al~ALQeAsEay---------------LV~lFEd~nlcaiHA-~~gGvkRIS~~iy~e~r 74 (121)
T 2ly8_A 27 WQSMAIMALQEASEAY---------------LVGLLEHTNLLALHL-VPRGSKRISGLIYEEVR 74 (121)
T ss_dssp BCHHHHHHHHHHHHHH---------------HHHHHHHHHHHTTTC-CCCCSSCCSSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHcC-CccCccchhHHHHHHHH
Confidence 6677888899999988 899999976555 22 45555 9999998774
No 87
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=24.46 E-value=54 Score=21.56 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+..
T Consensus 33 ~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~ 64 (121)
T 2j23_A 33 DKVVVIDFWATWCGPCKMIGPVFEKISDTPAG 64 (121)
T ss_dssp SSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC
Confidence 44577888899999999999999999988864
No 88
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=24.15 E-value=85 Score=20.74 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=31.5
Q ss_pred CCCCCeeEEEEccCCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 25 GMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 25 ~~~~PsF~~~~~~~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+... .+......+.-+.|.+.+..++.|.-..-.+..+++.|.
T Consensus 16 ~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~ 58 (144)
T 1o73_A 16 SKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH 58 (144)
T ss_dssp CTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhc
Confidence 3344 444444456677888888888888888888889998887
No 89
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=23.95 E-value=85 Score=23.72 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=27.6
Q ss_pred CEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 39 GALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 39 ~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
.-+.++++++.++-|..+.-.+..+|+.|.
T Consensus 121 k~vvV~F~a~wC~~C~~l~p~l~~la~~~~ 150 (217)
T 2trc_P 121 TTIVVNIYEDGVRGCDALNSSLECLAAEYP 150 (217)
T ss_dssp CEEEEEEECTTSTTHHHHHHHHHHHHTTCT
T ss_pred cEEEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence 568999999999999999999999999985
No 90
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans}
Probab=23.72 E-value=67 Score=25.90 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=48.3
Q ss_pred cCchHHHHHHhhhCCCCCCCe-eEEEE-ccCCEEEEEEE---------cCC-CChhHHHHHHHHHHHHHcccceeEEEee
Q psy7228 10 QNLDALHDHLGTLYPGMRAPS-FRCTE-TDDGALVLHYY---------SDR-PGLEHIVIGIVKVSWNKHQLTCTFELGL 77 (151)
Q Consensus 10 ~sLD~lH~~v~~~yp~~~~Ps-F~~~~-~~~~~l~L~Y~---------S~R-~Gl~~~~~GlI~~~Ak~f~~~v~ve~~~ 77 (151)
-||-+|..+++..+|+..+|. =..+. -..+-|.|-.. |++ .|...|..-+|++++++-
T Consensus 106 pSL~NI~kEL~~Dl~g~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~---------- 175 (247)
T 2boo_A 106 PSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKE---------- 175 (247)
T ss_dssp HHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCS----------
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCcHHHHhcCeEeeeceEEEeCCCCCCcccCChHHHHHHHHHHHHhcC----------
Confidence 477889999999999988883 11111 11233333221 332 389999999999998642
Q ss_pred eccceeeechhhhhhhh
Q psy7228 78 SKNISIVNDIDFKVLAK 94 (151)
Q Consensus 78 ~~~~~i~~~~~~~~~~~ 94 (151)
+..++.+||..+-..
T Consensus 176 --~~vVFiLWG~~Aq~k 190 (247)
T 2boo_A 176 --ERVVFILWGSYARKK 190 (247)
T ss_dssp --SCCEEEEESHHHHGG
T ss_pred --CCeEEEEeCHHHHhh
Confidence 356899999876433
No 91
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=22.76 E-value=1.3e+02 Score=20.25 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcccceeE
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQLTCTF 73 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~~v~v 73 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+...+.+
T Consensus 55 ~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~ 90 (148)
T 3p2a_A 55 DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRF 90 (148)
T ss_dssp SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 345788899999999999999999999999765444
No 92
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.76 E-value=65 Score=21.36 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=27.1
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.+.++++.++.|.-+.-.++.+++.+..
T Consensus 34 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 65 (140)
T 2dj1_A 34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD 65 (140)
T ss_dssp CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc
Confidence 45678888899999999999999999998864
No 93
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=22.31 E-value=1.4e+02 Score=21.74 Aligned_cols=29 Identities=3% Similarity=-0.178 Sum_probs=25.2
Q ss_pred EEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 40 ALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 40 ~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
.+.+.++++.++.|.-+.-.++.+|+.++
T Consensus 138 ~~~v~F~a~wC~~C~~~~~~~~~~~~~~~ 166 (229)
T 2ywm_A 138 IEIWVFVTTSCGYCPSAAVMAWDFALAND 166 (229)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHCT
T ss_pred eEEEEEECCCCcchHHHHHHHHHHHHHCC
Confidence 34678999999999999999999999984
No 94
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=22.09 E-value=2.1e+02 Score=19.99 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=31.2
Q ss_pred cCCEEEEEEEcCCCCh--hHHHHHHHHHHHHHcccceeEEEeee
Q psy7228 37 DDGALVLHYYSDRPGL--EHIVIGIVKVSWNKHQLTCTFELGLS 78 (151)
Q Consensus 37 ~~~~l~L~Y~S~R~Gl--~~~~~GlI~~~Ak~f~~~v~ve~~~~ 78 (151)
+++.+.|+-.+....+ .....=|-.+++++||.+++++++..
T Consensus 51 ~~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G~~v~L~i~~g 94 (128)
T 2aya_A 51 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 94 (128)
T ss_dssp CSSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEEC
T ss_pred eCCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 6889999998765433 44555677788899999988888543
No 95
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=21.33 E-value=71 Score=19.92 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHcc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQ 68 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~ 68 (151)
+.-..+.++++.++.|.-+.-.+..+|+.+.
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 51 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEF 51 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhh
Confidence 3457888899999999999999999999875
No 96
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=1.2e+02 Score=19.64 Aligned_cols=29 Identities=3% Similarity=-0.160 Sum_probs=26.1
Q ss_pred EEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 41 LVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 41 l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
..+.++++.++.|.-+.-.+..+|+.+..
T Consensus 25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 53 (126)
T 1x5e_A 25 WMIEFYAPWCPACQNLQPEWESFAEWGED 53 (126)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcc
Confidence 78999999999999999999999998864
No 97
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=21.12 E-value=3.3e+02 Score=22.26 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=50.8
Q ss_pred cccccccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcC---------CCChhHHHHHHHHHHHHHcccceeEE
Q psy7228 4 RNFVNFQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSD---------RPGLEHIVIGIVKVSWNKHQLTCTFE 74 (151)
Q Consensus 4 ~dF~~L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~---------R~Gl~~~~~GlI~~~Ak~f~~~v~ve 74 (151)
.+| +.-++.||..+=+.+=+-.+=..+-....++...|.=..+ ...++.|+-|+|+|+-...+-+++|.
T Consensus 174 ~d~--ldilkFIcK~~Wk~lFgKqaD~Lektn~~~geYvL~Dn~~pLt~fVs~~~L~y~af~cGIIRGAL~~lGf~a~VT 251 (283)
T 3cue_B 174 LKI--LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGENVSCEYFVCGIIKGFLFNAGFPCGVT 251 (283)
T ss_dssp CCH--HHHHHHHHHHHHHHTTSSCCSEEEECSSCSSCEEEEESSCSSSCSSCTTCCHHHHHHHHHHHHHHHHHTSCCCCE
T ss_pred ccH--HHHHHHHHHHHHHHHhCCCcchhccccCCCCEEEEEeCchHHHhhhccCCcchhhhHHHHHHHHHHhCCCceEEE
Confidence 355 6666667776666654444444422222335555554432 11367889999999999988775555
Q ss_pred Eeee------ccceeeechhhhhh
Q psy7228 75 LGLS------KNISIVNDIDFKVL 92 (151)
Q Consensus 75 ~~~~------~~~~i~~~~~~~~~ 92 (151)
-+.. ..-.++..|...|.
T Consensus 252 A~~~p~~~~~~~T~~~IkF~~~v~ 275 (283)
T 3cue_B 252 AHRMPQGGHSQRTVYLIQFDRQVL 275 (283)
T ss_dssp EECCCCSSCTTCEEEECCCCHHHH
T ss_pred EEEcccccCCCceEEEEEecHHHH
Confidence 4432 13455667766554
No 98
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=21.08 E-value=1.4e+02 Score=20.94 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.3
Q ss_pred ccCchHHHHHHhhhCCCCCCCeeEEEEccCCEEEEEEEcCCC
Q psy7228 9 FQNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP 50 (151)
Q Consensus 9 L~sLD~lH~~v~~~yp~~~~PsF~~~~~~~~~l~L~Y~S~R~ 50 (151)
..+.+++-+-++...|++..-.|+.+..+.+.++ -+|+-.
T Consensus 36 ~L~FrDvL~~I~~vmP~aT~TAFeYEDE~gDRIT--VRSDeE 75 (106)
T 2npt_A 36 QLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRIT--VRSDEE 75 (106)
T ss_dssp CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEE--ECSHHH
T ss_pred cccHHHHHHHHHHhCccceeeeeeeccccCCeeE--EcchHH
Confidence 4577888889999999999999999988777655 456653
No 99
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=20.92 E-value=1.1e+02 Score=20.50 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred CCCCCCeeEEEEccC---------CEEEEEEEcCCCChhHHHHHHHHHHHHHc
Q psy7228 24 PGMRAPSFRCTETDD---------GALVLHYYSDRPGLEHIVIGIVKVSWNKH 67 (151)
Q Consensus 24 p~~~~PsF~~~~~~~---------~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f 67 (151)
++...|.|.+...+. .-+.|.+.+..++.|.-..-.+..+++.|
T Consensus 7 ~g~~~p~f~l~~~~g~~~~l~~~~k~vll~f~~~~C~~C~~~~~~l~~l~~~~ 59 (154)
T 3ia1_A 7 PGEPLPDFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEET 59 (154)
T ss_dssp SBEECCCCCEECTTSCEECTTTSCSSEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCceEEECCCCCEechHHcCCeEEEEEEcccChhHHHHHHHHHHHHHHc
Confidence 455566676665433 23677778888888888888888888888
No 100
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=20.39 E-value=1.4e+02 Score=23.25 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=28.8
Q ss_pred CCEEEEEEEcCCCChhHHHHHHHHHHHHHccc
Q psy7228 38 DGALVLHYYSDRPGLEHIVIGIVKVSWNKHQL 69 (151)
Q Consensus 38 ~~~l~L~Y~S~R~Gl~~~~~GlI~~~Ak~f~~ 69 (151)
+.-+.++++++.++-|..+.-.+..+|+.|..
T Consensus 133 ~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~ 164 (245)
T 1a0r_P 133 ITTIVVHIYEDGIKGCDALNSSLICLAAEYPM 164 (245)
T ss_dssp TCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHHCCC
Confidence 45689999999999999999999999999864
Done!