RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7228
(151 letters)
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling
protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A*
3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A*
3tf9_A* 3tfa_A*
Length = 189
Score = 77.7 bits (191), Expect = 8e-19
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 4 RNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
+ F +NLD LH +G +P +R P+F C T ++ LHY S R GL +V+G++
Sbjct: 92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLH 150
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 73.7 bits (181), Expect = 2e-17
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 1 MTNRNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGI 59
R VNF +D +H L + G P A+ + Y S R + +G+
Sbjct: 86 FAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSKR-KMYDYFLGL 144
Query: 60 VK 61
++
Sbjct: 145 IE 146
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET:
HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Length = 181
Score = 66.2 bits (161), Expect = 2e-14
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 4 RNFVNF--QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVK 61
+F + D +H + LY P + + L Y S R L G++
Sbjct: 89 DDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYSSPR-RLCFCAEGLLF 147
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 46.9 bits (111), Expect = 5e-07
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 104 SDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148
+D V L E FQ+ + GP ++G + ++ + RG
Sbjct: 336 ADSVREAL-GDAPEADGFQWSFAGPRRLRGIRGDVRLFRVRRGAT 379
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 45.8 bits (109), Expect = 6e-07
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 104 SDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 145
S++ R L SP+N DPQF E+RGPV+MKGK EPM+VWFLSR
Sbjct: 158 SEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSR 199
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 40.0 bits (94), Expect = 6e-05
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 117 EDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 148
+F+ RG +T+KGK M + LS +
Sbjct: 159 SKERFEIRERGNITVKGKGT-MRTYLLSPLER 189
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 37.2 bits (87), Expect = 8e-04
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 117 EDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 149
+ + RG + +KGK + ++ +F++
Sbjct: 180 QTLGYTCTCRGIINVKGKGD-LKTYFVNTEMSR 211
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 37.2 bits (87), Expect = 8e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 101 NITSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
+ + RL F RG + +KGK M W+L
Sbjct: 148 QVPDEVYERL-------KDDFVLRERGHINVKGKGV-MRTWYL 182
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 36.7 bits (85), Expect = 0.001
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 115 DNEDPQFQFEYRGPVTMKGKSEPMEVWFLS 144
+ Q G V ++G S+P++++ L+
Sbjct: 188 AEDRKQIDVTALGDVALRGVSDPVKMYQLN 217
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 36.1 bits (84), Expect = 0.001
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 117 EDPQFQFEYRGPVTMKGKSEPMEVWFLSR 145
+ +F RG +KG + L R
Sbjct: 149 AGSRHRFAERGEQELKGVPGRWRLCVLMR 177
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 34.6 bits (80), Expect = 0.006
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 96 IFSEGNITSDFV---SRL--LCSPD------------NEDPQFQFEYRGPVTMKGKSEPM 138
+ +G+I D V +RL + P + F G +K + P+
Sbjct: 106 VLEDGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPI 165
Query: 139 EVW 141
VW
Sbjct: 166 RVW 168
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 31.0 bits (71), Expect = 0.092
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 120 QFQFEYRGPVTMKGKSEPMEVW 141
+G + +KG S P++++
Sbjct: 167 VIMCRDKGQIAVKGFSRPVQIY 188
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 31.1 bits (71), Expect = 0.10
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 116 NEDPQFQFEYRGPVTMKGK---SEPMEVWFLSRGKE 148
+ P F F R + P FL ++
Sbjct: 162 KDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQ 197
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 31.0 bits (71), Expect = 0.11
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 120 QFQFEYRGPVTMKGKSEPMEVW 141
+ V KG +P+ +W
Sbjct: 169 RVHVNGNRTVQPKGVKDPVVIW 190
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 29.1 bits (66), Expect = 0.43
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 119 PQFQFEYRGPVTMKGKSEPMEVW 141
P + R + +KG EP+
Sbjct: 188 PDEEIIKREFLELKGIDEPVMTC 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.92
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 64 WN--KHQLTCTFELGLSKNISIVNDIDFKVLAK--SIFSEG-NITSDFVSRLLCSPDNED 118
W+ KH + +++++ +++ + S+F +I + +S + D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 119 PQ 120
Sbjct: 404 VM 405
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 27.2 bits (60), Expect = 2.6
Identities = 9/33 (27%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 11 NLDALHDHL-GTLYPGMRAPSFRCTETDDGALV 42
A H L GMR S D V
Sbjct: 455 TGQAKHQALASGFTVGMRFHSAPVVRVCDAKPV 487
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 26.1 bits (57), Expect = 5.3
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 26/142 (18%)
Query: 11 NLDAL--HDHLGTLYP---GMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKVSWN 65
N+D L LG P G A S + G Y R E + +G+ +S +
Sbjct: 36 NMDKLAEIGILGQQDPIKPGQPAGSDTAHLSIFGYDPYETYRGRGFFEALGVGL-DLSKD 94
Query: 66 KHQLTCTFELGLSKNISIVNDIDFKVLAKSIFSEGNITSDFVSRL---LCSPDNEDPQFQ 122
F + I+ D G I+++ L + + F
Sbjct: 95 DLAFRVNF---ATLENGIITD----------RRAGRISTEEAHELARAIQEEVDIGVDFI 141
Query: 123 F----EYRGPVTMKGKSEPMEV 140
F +R + +KG S +V
Sbjct: 142 FKGATGHRAVLVLKGMSRGYKV 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,356,405
Number of extensions: 131392
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 21
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)