RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7228
         (151 letters)



>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
           {Thermoanaerobacter tengcongensis [TaxId: 119072]}
          Length = 188

 Score = 69.5 bits (170), Expect = 4e-16
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 1   MTNRNFVNF-QNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGI 59
              R  VNF   +D +H  L  +  G   P          A+ + Y S R  +    +G+
Sbjct: 86  FAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSKR-KMYDYFLGL 144

Query: 60  VK 61
           ++
Sbjct: 145 IE 146


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 102 ITSDFVSRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 145
           +T      L      +  Q      G V ++G S+P++++ L+ 
Sbjct: 178 MTHAAYMSL---SAEDRKQIDVTALGDVALRGVSDPVKMYQLNT 218


>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 117 EDPQFQFEYRGPVTMKGKSEPMEVWFLS 144
           +   +    RG + +KGK + ++ +F++
Sbjct: 172 QTLGYTCTCRGIINVKGKGD-LKTYFVN 198


>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
           [TaxId: 118562]}
          Length = 197

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 119 PQFQFEYRGPVTMKGKSEPMEVWFLS 144
           P  +   R  + +KG  EP+    ++
Sbjct: 168 PDEEIIKREFLELKGIDEPVMTCVIN 193


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 33.0 bits (74), Expect = 0.008
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 116 NEDPQFQFEYRGPVTMKGKSEPMEVWFL 143
           N D + +    G      K   +E + +
Sbjct: 162 NGDYEVEPGCGGERNAYLKEHSIETFLI 189


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 582,915
Number of extensions: 25586
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 7
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)