BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7229
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 21/29 (72%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
VETVGDKYM VSGLP C HAR I LA
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHARSICHLA 93
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 20/29 (68%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
VETV DKYM VSGLP C HAR I LA
Sbjct: 66 VETVCDKYMTVSGLPEPCIHHARSICHLA 94
>pdb|2P08|A Chain A, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
pdb|2P08|B Chain B, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
Length = 115
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 105 RPHLDLTFDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYP 164
RP + + FD I +++L E ++ +++KGQM+Y PE +++ FL P
Sbjct: 51 RPKILIDFDAISKQPRALFIL-----------EFLHNGMQLKGQMMYQPEEEVIFFLGSP 99
Query: 165 SVVNLDDLTRRGL 177
+ + L G+
Sbjct: 100 WITDTTSLAPLGI 112
>pdb|2P04|A Chain A, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
pdb|2P04|B Chain B, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
Length = 121
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 105 RPHLDLTFDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYP 164
RP + + FD I +++L E ++ +++KGQM+Y PE +++ FL P
Sbjct: 57 RPKILIDFDAISKQPRALFIL-----------EFLHNGMQLKGQMMYQPEEEVIFFLGSP 105
Query: 165 SVVNLDDLTRRGL 177
+ + L G+
Sbjct: 106 WITDTTSLAPLGI 118
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 64 NAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVR 105
NA +D ++ D Y S PVSC +HAR AH+ VR
Sbjct: 293 NAPYDAGFSIDDDYQGRSHSPVSCDEHARA----AHVASVVR 330
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
VET+GD YM V + V C DHA + A
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFA 84
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
VET+GD YM V + V C DHA + A
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFA 84
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 61 LPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLA 98
L H ++ +GD Y VSGLP + DHA C +
Sbjct: 71 LAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMG 108
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 61 LPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARL 97
L H ++ +GD Y VSGLP + DHA C +
Sbjct: 71 LAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEM 107
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 61 LPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLA 98
L H ++ +GD Y VSGLP + DHA C +
Sbjct: 63 LAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMG 100
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
+E GD YM VSG+P DH + +A A
Sbjct: 56 IEVSGDSYMVVSGVPRPRPDHTQALADFA 84
>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 GIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLF 178
G+ TGA+E +S K + +P+ DL++FL + L D +RG F
Sbjct: 105 GVAYTGAKENFSLDWCKQPDVGLPKPDLVLFL----QLQLADAAKRGAF 149
>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion And
Alf3
pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Nh2tmp
And Appnhp
pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Adp
pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp +
Appnhp
Length = 215
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 GIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLF 178
G+ TGA+E +S K + +P+ DL++FL + L D +RG F
Sbjct: 105 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFL----QLQLADAAKRGAF 149
>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 GIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLF 178
G+ TGA+E +S K + +P+ DL++FL + L D +RG F
Sbjct: 99 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFL----QLQLADAAKRGAF 143
>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 GIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLF 178
G+ TGA+E +S K + +P+ DL++FL + L D +RG F
Sbjct: 122 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFL----QLQLADAAKRGAF 166
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 130 GIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLF 178
G+ TGA+E +S K + +P+ DL++FL + L D +RG F
Sbjct: 105 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFL----QLQLADAAKRGAF 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,951,045
Number of Sequences: 62578
Number of extensions: 163610
Number of successful extensions: 328
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)