Query psy7229
Match_columns 183
No_of_seqs 223 out of 606
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:23:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07701 HNOBA: Heme NO bindin 100.0 5.8E-29 1.2E-33 208.2 6.0 127 50-183 8-156 (219)
2 KOG4171|consensus 99.9 7.6E-25 1.7E-29 205.1 8.4 123 56-183 244-367 (671)
3 KOG4171|consensus 99.9 5.5E-24 1.2E-28 199.3 2.3 97 7-108 424-527 (671)
4 KOG1023|consensus 99.7 1.3E-18 2.7E-23 160.1 1.1 110 7-121 278-399 (484)
5 KOG3618|consensus 98.9 8.2E-11 1.8E-15 112.6 -2.6 78 29-106 339-423 (1318)
6 KOG3619|consensus 98.8 4.5E-10 9.8E-15 109.3 -2.4 84 24-107 106-196 (867)
7 PF00211 Guanylate_cyc: Adenyl 98.6 1.8E-09 3.8E-14 85.6 -4.4 79 26-104 4-89 (184)
8 smart00044 CYCc Adenylyl- / gu 98.2 2.8E-07 6.2E-12 73.9 0.6 81 26-106 32-120 (194)
9 cd07302 CHD cyclase homology d 98.0 9.2E-07 2E-11 68.0 -1.0 76 31-106 2-84 (177)
10 COG2114 CyaA Adenylate cyclase 97.9 1.6E-06 3.5E-11 72.4 -0.3 60 29-88 45-110 (227)
11 KOG3619|consensus 96.7 0.00085 1.8E-08 66.2 2.3 80 4-85 626-718 (867)
12 KOG3618|consensus 96.1 0.0011 2.4E-08 64.8 -1.0 58 27-85 1080-1149(1318)
13 COG5148 RPN10 26S proteasome r 48.0 12 0.00026 31.5 1.8 19 157-175 110-128 (243)
14 KOG2884|consensus 33.2 21 0.00046 30.6 1.0 20 157-176 110-129 (259)
15 PHA02580 8 baseplate wedge sub 30.7 24 0.00051 31.2 0.9 27 146-179 303-329 (331)
16 PF11848 DUF3368: Domain of un 21.2 45 0.00098 21.1 0.7 13 169-181 25-37 (48)
No 1
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=99.95 E-value=5.8e-29 Score=208.17 Aligned_cols=127 Identities=33% Similarity=0.495 Sum_probs=71.3
Q ss_pred cchhhhhhcccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhchhccccccccccccchhhhhhhccceEEEEeCC
Q psy7229 50 PPSVFTTSSAMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPHLDLTFDNILAHINTVYVLKTKP 129 (183)
Q Consensus 50 p~~v~~~~~~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~mAdmfelvRP~i~~tfe~Il~~~N~~F~L~~~~ 129 (183)
+...|..+|+..+-.-.-.||.++|..+..+.+.. ..+..+.++|+++||.++++|++|+.++|++|+|++++
T Consensus 8 ~~~~F~~lFPFHi~fd~dl~I~~~G~~L~~~~p~~-------~~g~~~~d~F~l~rP~i~~tf~~I~~~~n~~F~L~~~~ 80 (219)
T PF07701_consen 8 SSSTFCKLFPFHIVFDRDLKIVQVGEGLQRLLPDL-------LLGKSLTDIFELVRPKIEFTFDNILSHINNVFELESKS 80 (219)
T ss_dssp -HCCHHHHSTT-EEEETT-BEEEE-HHHHHC-SS---------TTSBGGGTEEEEESS--S-HHHHHT-TTS-EEEEE--
T ss_pred CHHHHHhhCCeEEEECCCCEEEECchHHHHhCccc-------ccCCCcceEEEecCCCCcccHHHHHHhcCCeEEEEECc
Confidence 34455556665544445589999999999999432 23556889999999999999999999999999999998
Q ss_pred CCCCCCc----------------------cccccceEEeeeEEEEcCCCeEEEEcCCCcCChhHHhhcCcccccCC
Q psy7229 130 GIMQTGA----------------------EECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIT 183 (183)
Q Consensus 130 ~~~~~~~----------------------~~~~~~l~LKGQM~~l~e~~~ilFLcSP~v~~L~eL~~~GLyLsDi~ 183 (183)
+..+... ..+.+.++|||||+|++|||+|+|||||+|++++||.++||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LkGQM~y~~e~~~ilFl~sP~v~~l~el~~~gl~lsD~p 156 (219)
T PF07701_consen 81 PVMSTAKNNIPSNSKSTPRSSDQSSRSTVNDEARSLKLKGQMVYLEEWDSILFLGSPVVSSLEELRERGLYLSDLP 156 (219)
T ss_dssp ---------------------------------T--EEEEEEEEETTTTEEEEEEEE---TT--------------
T ss_pred hhhcccccccccccccccccccccccccccccCCceEEEEEEEEecCCCeEEEEcccccCCHHHHHHcCCCccccC
Confidence 6542210 01234699999999999999999999999999999999999999997
No 2
>KOG4171|consensus
Probab=99.91 E-value=7.6e-25 Score=205.07 Aligned_cols=123 Identities=38% Similarity=0.608 Sum_probs=102.4
Q ss_pred hhcccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhchhccccccccccccchhhhhhhccceEEEEeCCCCCCCC
Q psy7229 56 TSSAMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPHLDLTFDNILAHINTVYVLKTKPGIMQTG 135 (183)
Q Consensus 56 ~~~~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~mAdmfelvRP~i~~tfe~Il~~~N~~F~L~~~~~~~~~~ 135 (183)
..|...+..-.-.+|+++|++..... |. + -...++.+.++|++.||+++++|++|+.++|++|+|++++..+..+
T Consensus 244 ~~fPfHf~fd~~~~i~q~G~~l~n~~--~~-~--~~~~~~~~~~~fe~~rP~i~~~fe~I~~~~Nt~Fvl~~k~~~~~~~ 318 (671)
T KOG4171|consen 244 KAFPFHFMFDKDLEIVQAGNGLLNLM--PP-N--LLQGGTNLEDYFEIVRPKIPFTFENIMSHINTVFVLQLKPEPMSVE 318 (671)
T ss_pred hhCcEEEEEcCCcEehHhhHHHHHhc--ch-h--hcccCCcHHHHHhhcCCCccccHHHHHHhhcccEEEEecCCccccc
Confidence 44455555555689999999988766 21 1 1234555669999999999999999999999999999999877655
Q ss_pred c-cccccceEEeeeEEEEcCCCeEEEEcCCCcCChhHHhhcCcccccCC
Q psy7229 136 A-EECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIT 183 (183)
Q Consensus 136 ~-~~~~~~l~LKGQM~~l~e~~~ilFLcSP~v~~L~eL~~~GLyLsDi~ 183 (183)
+ +.+.+.|+|||||+|++|+++|||||||.|++|+||.++||||||||
T Consensus 319 ~~~~~~~~l~LKGQM~~i~e~~sIlflcSP~V~~LdeL~~~GLyLsDip 367 (671)
T KOG4171|consen 319 RDSESLRVLKLKGQMMYIPESDSILFLCSPVVDNLDELTGRGLYLSDIP 367 (671)
T ss_pred ccccccceEEEeeeEEEecCCCeEEEEcCcccCchHHHHhCCceeccCC
Confidence 3 23568899999999999999999999999999999999999999997
No 3
>KOG4171|consensus
Probab=99.88 E-value=5.5e-24 Score=199.31 Aligned_cols=97 Identities=27% Similarity=0.335 Sum_probs=88.1
Q ss_pred hhhHhhhcCCCCCCCCCCCccCCCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHH
Q psy7229 7 RLEQFLWTGSGDGEDFGPNAIHPTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAV 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v 80 (183)
+.+++||.|+..++ +.|+++||+|+||||||+||+.++|.||+++++ |.+++.|+|||||||||+||+|
T Consensus 424 ~VA~qLr~g~~v~a-----~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~v 498 (671)
T KOG4171|consen 424 SVAQQLRQGESVDA-----KEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVV 498 (671)
T ss_pred HHHHHHHcCCCcCc-----cccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheee
Confidence 46788999998766 677899999999999999999999999998754 6789999999999999999999
Q ss_pred hCCCCcCcchhhhhhchh-cccccccccc
Q psy7229 81 SGLPVSCQDHARCIARLA-HILDPVRPHL 108 (183)
Q Consensus 81 ~Glp~~~~~ha~~ia~mA-dmfelvRP~i 108 (183)
+|+|++++.||+.+|++| +|+...+-.+
T Consensus 499 sG~P~~~~~HAe~i~~~AL~Mm~~ak~v~ 527 (671)
T KOG4171|consen 499 SGLPDASDYHAEHIADLALGMMEEAKEVV 527 (671)
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999 9988888663
No 4
>KOG1023|consensus
Probab=99.71 E-value=1.3e-18 Score=160.06 Aligned_cols=110 Identities=25% Similarity=0.268 Sum_probs=88.4
Q ss_pred hhhHhhhcCCCCCCCCCCCccCCCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHH
Q psy7229 7 RLEQFLWTGSGDGEDFGPNAIHPTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAV 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v 80 (183)
..++.|..|...++ ..|.++|+.|+||||||++|+.++|.||++.++ |.++++||+||||||||+||++
T Consensus 278 ~VA~~lk~G~~v~p-----e~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvv 352 (484)
T KOG1023|consen 278 SVAESLKLGKTVDP-----ESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVV 352 (484)
T ss_pred HHhhHhhcCCcCCc-----cccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeec
Confidence 34556666666544 456779999999999999999999999998654 5578999999999999999999
Q ss_pred hCCCCcCcc-hhhhhhchh-ccccccc----cccccchhhhhhhccc
Q psy7229 81 SGLPVSCQD-HARCIARLA-HILDPVR----PHLDLTFDNILAHINT 121 (183)
Q Consensus 81 ~Glp~~~~~-ha~~ia~mA-dmfelvR----P~i~~tfe~Il~~~N~ 121 (183)
||+|.+++. |+..++.|+ ++....+ ||.+..--.|+...|+
T Consensus 353 Sglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~s 399 (484)
T KOG1023|consen 353 SGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHS 399 (484)
T ss_pred ccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeecccc
Confidence 999999884 999999999 8776666 5666555566655555
No 5
>KOG3618|consensus
Probab=98.91 E-value=8.2e-11 Score=112.57 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhchh-ccc
Q psy7229 29 PTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLA-HIL 101 (183)
Q Consensus 29 ~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~mA-dmf 101 (183)
.++.++|+||||||.+++..+..+.+..++ |.||+-.+..||.|+||||-+|+|.|+|+.+||.+-..|. +|.
T Consensus 339 enVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI 418 (1318)
T KOG3618|consen 339 ENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMI 418 (1318)
T ss_pred hhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcccceeeehhhcchHH
Confidence 688999999999999999988777775433 4578888999999999999999999999999998877887 887
Q ss_pred ccccc
Q psy7229 102 DPVRP 106 (183)
Q Consensus 102 elvRP 106 (183)
..+|-
T Consensus 419 ~Airq 423 (1318)
T KOG3618|consen 419 KAIRQ 423 (1318)
T ss_pred HHHHH
Confidence 77774
No 6
>KOG3619|consensus
Probab=98.78 E-value=4.5e-10 Score=109.28 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=74.1
Q ss_pred CCccCCCCCEEEeeecCccceecccCcchhhhhh------cccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhch
Q psy7229 24 PNAIHPTPPVVITTIFHTTTIHTTVFPPSVFTTS------SAMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARL 97 (183)
Q Consensus 24 ~~~~~~~~~v~f~di~~~t~~~~~~~p~~v~~~~------~~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~m 97 (183)
-.+.|+.+.++||||||||.+++++++.+.+.++ ||.|++++....|+-.||||.+++|+|.++++||.....|
T Consensus 106 y~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~m 185 (867)
T KOG3619|consen 106 YIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEM 185 (867)
T ss_pred heeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHH
Confidence 3567899999999999999999998888776543 3578899999999999999999999999889999999999
Q ss_pred h-ccccccccc
Q psy7229 98 A-HILDPVRPH 107 (183)
Q Consensus 98 A-dmfelvRP~ 107 (183)
. +|.+.+++.
T Consensus 186 gl~Mi~aI~~v 196 (867)
T KOG3619|consen 186 GLDMIKAIKQV 196 (867)
T ss_pred HHHHHHHHHHH
Confidence 9 998888764
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=98.57 E-value=1.8e-09 Score=85.59 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=65.9
Q ss_pred ccCCCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhchh-
Q psy7229 26 AIHPTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLA- 98 (183)
Q Consensus 26 ~~~~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~mA- 98 (183)
..+.+++|+|+||+|||.+++...|.++...++ +.++.+|+.++++++||+||+++|.|.+..+|+...+.++
T Consensus 4 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~al 83 (184)
T PF00211_consen 4 EQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQFAL 83 (184)
T ss_dssp EEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHHHH
T ss_pred cccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccccccccccccccc
Confidence 445678999999999999999998998887544 3357899999999999999999999976667887777777
Q ss_pred cccccc
Q psy7229 99 HILDPV 104 (183)
Q Consensus 99 dmfelv 104 (183)
++.+..
T Consensus 84 ~~~~~~ 89 (184)
T PF00211_consen 84 ALLEAL 89 (184)
T ss_dssp HHHHHH
T ss_pred chhhcc
Confidence 776665
No 8
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.23 E-value=2.8e-07 Score=73.87 Aligned_cols=81 Identities=28% Similarity=0.365 Sum_probs=65.1
Q ss_pred ccCCCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHHhCCCCcCc-chhhhhhchh
Q psy7229 26 AIHPTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAVSGLPVSCQ-DHARCIARLA 98 (183)
Q Consensus 26 ~~~~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~-~ha~~ia~mA 98 (183)
..+...+|+|+||+|||.+++...|.++...+. +.++.+|+.+.++++||++++++|.|.... +|+...+..+
T Consensus 32 ~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~a 111 (194)
T smart00044 32 ESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTIGDAYMVVSGLPTEALVDHAELAADEA 111 (194)
T ss_pred cccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeCCEEEEEECCCCCcchHHHHHHHHHH
Confidence 345679999999999999999999998876543 235688999999999999999999987663 6787777777
Q ss_pred -cccccccc
Q psy7229 99 -HILDPVRP 106 (183)
Q Consensus 99 -dmfelvRP 106 (183)
++.+..+.
T Consensus 112 l~l~~~~~~ 120 (194)
T smart00044 112 LDMVESLKT 120 (194)
T ss_pred HHHHHHHHH
Confidence 66655443
No 9
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=97.99 E-value=9.2e-07 Score=68.03 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=62.3
Q ss_pred CCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHHhCCCCcCcchhhhhhchh-ccccc
Q psy7229 31 PPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLA-HILDP 103 (183)
Q Consensus 31 ~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~~ha~~ia~mA-dmfel 103 (183)
.+|+|.||+|||.+.....|.++...+. +.++.+|+.+++++.||+|+++++.|....+|+......| ++.+.
T Consensus 2 ~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~~ 81 (177)
T cd07302 2 VTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEA 81 (177)
T ss_pred EEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHHH
Confidence 6899999999999999888888886543 3356779999999999999999999876666777777777 77666
Q ss_pred ccc
Q psy7229 104 VRP 106 (183)
Q Consensus 104 vRP 106 (183)
.+.
T Consensus 82 ~~~ 84 (177)
T cd07302 82 LAE 84 (177)
T ss_pred HHH
Confidence 554
No 10
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=97.94 E-value=1.6e-06 Score=72.39 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=50.7
Q ss_pred CCCCEEEeeecCccceecccCcchhhhhhc------ccccCCcceEEEeehhhhHHHHhCCCCcCc
Q psy7229 29 PTPPVVITTIFHTTTIHTTVFPPSVFTTSS------AMLPGNAHWDWVETVGDKYMAVSGLPVSCQ 88 (183)
Q Consensus 29 ~~~~v~f~di~~~t~~~~~~~p~~v~~~~~------~~l~~~~dvyKVeTIGDaYm~v~Glp~~~~ 88 (183)
..+|++|+||+|||.++....|..+...++ ...+..|+...++++||++|+++|.|.+..
T Consensus 45 ~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~ 110 (227)
T COG2114 45 RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE 110 (227)
T ss_pred ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH
Confidence 468999999999999999999988775332 235688999999999999999999998544
No 11
>KOG3619|consensus
Probab=96.71 E-value=0.00085 Score=66.23 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=57.2
Q ss_pred chhhhhHhhhcCCCCCCCCCCCccCCCCCEEEeeecCccceeccc-----------Ccchhhhhhccccc-CC-cceEEE
Q psy7229 4 DGLRLEQFLWTGSGDGEDFGPNAIHPTPPVVITTIFHTTTIHTTV-----------FPPSVFTTSSAMLP-GN-AHWDWV 70 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~di~~~t~~~~~~-----------~p~~v~~~~~~~l~-~~-~dvyKV 70 (183)
|-.++++|+....-..+-|. +-|..+-|+||.|.+|..-.++. .-+++++-+|..|- ++ .++.||
T Consensus 626 PaHVA~HFl~~~~r~~eLY~--qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKI 703 (867)
T KOG3619|consen 626 PSHVAAHFLGSKKRNEELYH--QSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNEIIADFDELLSKPKFSGVEKI 703 (867)
T ss_pred hHHHHHHHhhcccchHHHHH--hhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHHHHhhHHHhcCccccccceeE
Confidence 55677888755544433332 45788999999999997777753 45566666654433 24 489999
Q ss_pred eehhhhHHHHhCCCC
Q psy7229 71 ETVGDKYMAVSGLPV 85 (183)
Q Consensus 71 eTIGDaYm~v~Glp~ 85 (183)
+|||..||+++|+-.
T Consensus 704 KTIGSTYMAAsGL~~ 718 (867)
T KOG3619|consen 704 KTIGSTYMAASGLNP 718 (867)
T ss_pred EEecchhhhhhCCCh
Confidence 999999999999853
No 12
>KOG3618|consensus
Probab=96.08 E-value=0.0011 Score=64.79 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=43.4
Q ss_pred cCCCCCEEEeeecCccceecccCc---------chhhhhhcccccCC---cceEEEeehhhhHHHHhCCCC
Q psy7229 27 IHPTPPVVITTIFHTTTIHTTVFP---------PSVFTTSSAMLPGN---AHWDWVETVGDKYMAVSGLPV 85 (183)
Q Consensus 27 ~~~~~~v~f~di~~~t~~~~~~~p---------~~v~~~~~~~l~~~---~dvyKVeTIGDaYm~v~Glp~ 85 (183)
-|.+..|+|+.||+|..+..+..- ++++--+ |+|..+ ..+.||+|||.+||+++|+..
T Consensus 1080 NH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDF-DELLsrPdf~~iEKIKTIG~tyMAASGLnp 1149 (1318)
T KOG3618|consen 1080 NHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDF-DELLSRPDFSSIEKIKTIGATYMAASGLNP 1149 (1318)
T ss_pred cCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccH-HHHhccccchhhHHHhhhhHHHHHhcCCCh
Confidence 367899999999999999987432 2333233 445443 468999999999999999853
No 13
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=12 Score=31.49 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.6
Q ss_pred eEEEEcCCCcCChhHHhhc
Q psy7229 157 LMIFLCYPSVVNLDDLTRR 175 (183)
Q Consensus 157 ~ilFLcSP~v~~L~eL~~~ 175 (183)
.+.|+|||+.++-++|.++
T Consensus 110 iVaFvgSpi~esedeLirl 128 (243)
T COG5148 110 IVAFVGSPIQESEDELIRL 128 (243)
T ss_pred EEEEecCcccccHHHHHHH
Confidence 4789999999999998764
No 14
>KOG2884|consensus
Probab=33.18 E-value=21 Score=30.65 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.2
Q ss_pred eEEEEcCCCcCChhHHhhcC
Q psy7229 157 LMIFLCYPSVVNLDDLTRRG 176 (183)
Q Consensus 157 ~ilFLcSP~v~~L~eL~~~G 176 (183)
.++|+|||+..+-.+|.++.
T Consensus 110 iVvFvGSpi~e~ekeLv~~a 129 (259)
T KOG2884|consen 110 IVVFVGSPIEESEKELVKLA 129 (259)
T ss_pred EEEEecCcchhhHHHHHHHH
Confidence 48999999999999987754
No 15
>PHA02580 8 baseplate wedge subunit; Provisional
Probab=30.72 E-value=24 Score=31.24 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCeEEEEcCCCcCChhHHhhcCccc
Q psy7229 146 KGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLFI 179 (183)
Q Consensus 146 KGQM~~l~e~~~ilFLcSP~v~~L~eL~~~GLyL 179 (183)
.|||+||+... |+++++++-++..|.+
T Consensus 303 SGemIYmENRq-------pI~rs~DQtEeinivf 329 (331)
T PHA02580 303 SGEMIYMENRQ-------PIIRSLDQTEEINIIF 329 (331)
T ss_pred CCcEEEEecCc-------ccccCcccceeeeEEE
Confidence 69999999986 7888888877765543
No 16
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.24 E-value=45 Score=21.10 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=11.0
Q ss_pred hhHHhhcCccccc
Q psy7229 169 LDDLTRRGLFISD 181 (183)
Q Consensus 169 L~eL~~~GLyLsD 181 (183)
+++|.+.|.|+|+
T Consensus 25 l~~l~~~g~~is~ 37 (48)
T PF11848_consen 25 LDRLQQAGFRISP 37 (48)
T ss_pred HHHHHHcCcccCH
Confidence 6888999999885
Done!