RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7229
(183 letters)
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 123 bits (310), Expect = 1e-35
Identities = 48/90 (53%), Positives = 63/90 (70%), Gaps = 11/90 (12%)
Query: 104 VRPHLDLTFDNILAHINTVYVLKTKPGIM-----------QTGAEECYSTLRIKGQMLYV 152
VRP + TF+NIL+HINTV+VL+TK G+M E +LR+KGQM+Y+
Sbjct: 57 VRPKITFTFENILSHINTVFVLRTKSGVMSVTDNNNVEDAADIDESPLKSLRLKGQMIYI 116
Query: 153 PESDLMIFLCYPSVVNLDDLTRRGLFISDI 182
PESD ++FLC PSV NLD+LT RGL++SDI
Sbjct: 117 PESDSILFLCSPSVDNLDELTGRGLYLSDI 146
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase
catalytic domain.
Length = 184
Score = 46.5 bits (111), Expect = 9e-07
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
V+T+GD YMA SGLP HA+ +A +A
Sbjct: 54 VKTIGDAYMAASGLPEPSPAHAQTLAEMA 82
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic
and prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions
to bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 43.7 bits (104), Expect = 7e-06
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
+T+GD MAV GLP + +DHA R A
Sbjct: 47 DKTIGDAVMAVFGLPGAHEDHAERAVRAA 75
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 43.4 bits (103), Expect = 1e-05
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 70 VETVGDKYMAVSGLPVSC-QDHARCIARLA-HILDPVR 105
V+T+GD YM SGLP DHA IA A +++ ++
Sbjct: 82 VKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELK 119
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 29.8 bits (67), Expect = 0.58
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPHLDLTFDNILAHI--NTVYVL 125
V+ +GD ++AV G P +D C L L P L +++ I +T V+
Sbjct: 92 VKFIGDGFLAVFGRPSPLEDAVACALDLQ--LALRNPLARLRRESLRVRIGIHTGEVV 147
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 27.7 bits (62), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA 98
++T+GD++M VSGL DH A
Sbjct: 47 IKTIGDEFMVVSGL-----DHPAAAVAFA 70
>gnl|CDD|187759 cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family. The
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family includes members from all three kingdoms, but
only three members of the family have been functionally
characterized: the TehA protein of E. coli functioning
as a tellurite-resistance uptake permease, the Mae1
protein of S. pombe functioning in the uptake of malate
and other dicarboxylates, and the sulfite efflux pump
(SSU1) of Saccharomyces cerevisiae. In plants, the
plasma membrane protein SLAC1 (Slow Anion
Channel-Associated 1), which is preferentially expressed
in guard cells, encodes a distant homolog of fungal and
bacterial dicarboxylate/malic acid transport proteins.
SLAC1 is essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane alpha-helical
spanners (TMSs).
Length = 317
Score = 28.0 bits (63), Expect = 2.6
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 46 TTVFPPSVFTTSSAMLPGNAHWDWVETVGD 75
+TVFP ++ ++ L W+ +G
Sbjct: 272 STVFPLGMYAAATLALARALGLPWLMAIGR 301
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This
family consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or
programmed cell death is a physiological form of cell
death that occurs in embryonic development and organ
formation. It is characterized by biochemical and
morphological changes such as DNA fragmentation and cell
volume shrinkage. API5 is an anti apoptosis gene located
in human chromosome 11, whose expression prevents the
programmed cell death that occurs upon the deprivation
of growth factors.
Length = 543
Score = 27.7 bits (61), Expect = 4.2
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 54 FTTSSAMLPGNAHWDWVET--VGDKYMAVSGLPVSCQDHARCIARLAHIL 101
F S A +A +D + G + A+ GLP+ C+D +++ +L
Sbjct: 52 FFPSLATEAFDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVL 101
>gnl|CDD|218287 pfam04841, Vps16_N, Vps16, N-terminal region. This protein forms
part of the Class C vacuolar protein sorting (Vps)
complex. Vps16 is essential for vacuolar protein
sorting, which is essential for viability in plants, but
not yeast. The Class C Vps complex is required for
SNARE-mediated membrane fusion at the lysosome-like
yeast vacuole. It is thought to play essential roles in
membrane docking and fusion at the Golgi-to-endosome and
endosome-to-vacuole stages of transport. The role of
VPS16 in this complex is not known.
Length = 408
Score = 27.5 bits (61), Expect = 5.2
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 32 PVVITTIFHTTTIHTTVFPPSVFTTSSAM-LPGNAHWDWV-ETVGDKYMAVSGLPVSCQ- 88
PV IF T+ H+ V V T S + L + + ++ SC
Sbjct: 124 PVQECRIFTTSFGHSGVA---VLTKSGRVYLLNGVEEPLLWRNKPEIPNLLTKNHWSCSD 180
Query: 89 DHARC--IARLAHILDPVRPHLDLTFDNILAHINTVYV 124
+ + I V L L + H NT +
Sbjct: 181 TSIILLLVDHVYQISLSVGELLKLITEQSSQHANTKWH 218
>gnl|CDD|191867 pfam07837, FTCD_N, Formiminotransferase domain, N-terminal
subdomain. The formiminotransferase (FT) domain of
formiminotransferase- cyclodeaminase (FTCD) forms a
homodimer, and each protomer comprises two subdomains.
The N-terminal subdomain is made up of a six-stranded
mixed beta-pleated sheet and five alpha helices, which
are arranged on the external surface of the beta sheet.
This, in turn, faces the beta-sheet of the C-terminal
subdomain to form a double beta-sheet layer. The two
subdomains are separated by a short linker sequence,
which is not thought to be any more flexible than the
remainder of the molecule. The substrate is predicted to
form a number of contacts with residues found in both
the N-terminal and C-terminal subdomains.
Length = 178
Score = 26.4 bits (59), Expect = 7.8
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 21 DFGPNAIHPTPPVVIT 36
DFGP HPT
Sbjct: 159 DFGPAEFHPTAGATAV 174
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 26.2 bits (58), Expect = 9.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 83 LPVSCQDHARCIARLAHILDPVRPHLDLTFDNIL 116
+ A +A+L + V H DL NIL
Sbjct: 88 KEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNIL 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.445
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,517,374
Number of extensions: 853980
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 11
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)