RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7229
(183 letters)
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous
to domain in soluble guanylyl CY transferase; 2.00A
{Nostoc punctiforme} PDB: 2p04_A
Length = 115
Score = 82.6 bits (204), Expect = 4e-21
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 96 RLAHILDPVRPHLDLTFDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPES 155
+ RP + + FD I +++L+ MQ +KGQM+Y PE
Sbjct: 42 LIEQHFQINRPKILIDFDAISKQPRALFILEFLHNGMQ-----------LKGQMMYQPEE 90
Query: 156 DLMIFLCYPSVVNLDDLTRRGLFI 179
+++ FL P + + L G+ +
Sbjct: 91 EVIFFLGSPWITDTTSLAPLGIKL 114
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 57.7 bits (140), Expect = 7e-11
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA-HILDPVR 105
VETVGDKYM VSGLP C HAR I LA +++
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAG 101
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 57.6 bits (140), Expect = 7e-11
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA-HILDPVR 105
+E GD YM VSG+P DH + +A A + +
Sbjct: 56 IEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAA 92
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 57.7 bits (140), Expect = 9e-11
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA-HILDPVR 105
VET+GD Y GL HA IA +A +++
Sbjct: 60 VETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSD 96
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 56.5 bits (137), Expect = 1e-10
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA-HILDPVR 105
VET+GD YM V + V C DHA + A + +
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEAS 92
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 52.7 bits (127), Expect = 5e-09
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLA-HILDPVR 105
++ +GD Y VSGLP + DHA C + +++ +
Sbjct: 80 IKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAIS 116
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 43.0 bits (102), Expect = 1e-05
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 70 VETVGDKYMAVSGLPVS-CQDHARCIARLAHILDPVRPHLDLTFDNILAHINTVYVLKTK 128
++T+G YMA +GL Q+HA+ R H+ + A + + +
Sbjct: 67 IKTIGSTYMAATGLSAIPSQEHAQEPERQYM-------HIGTMVEFAYALVGKLDAINKH 119
Query: 129 PG 130
Sbjct: 120 SF 121
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 41.5 bits (97), Expect = 6e-05
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 69 WVETVGDKYMAVSGLPVSCQDHARCIARLAH 99
+++T+GD M V P D + +
Sbjct: 259 FIKTIGDAVMLVCPDPAPLLDTVLKLVEVVD 289
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 38.3 bits (89), Expect = 6e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 70 VETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPHLD 109
V+TVGD +M S P + A+ + D LD
Sbjct: 57 VKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALD 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 8e-04
Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 55/183 (30%)
Query: 16 SGDGEDFGPNAIHPTPPVVITTIF------HTTTIHTTVFPPSVFTTS--------SAML 61
+ E F + IT +F + +T++ PPS+ S S ML
Sbjct: 286 TDSWESFFVSVRK-----AITVLFFIGVRCYEAYPNTSL-PPSILEDSLENNEGVPSPML 339
Query: 62 --PG-------------NAHWDWVETV------GDKYMAVSGLPVS---CQDHARCIARL 97
N+H + V G K + VSG P S R
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 98 AHILDPVR-------PHLDLTFDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQML 150
+ LD R F + + ++ ++ I + + + + +
Sbjct: 400 SG-LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN---NVSFNAKDI 455
Query: 151 YVP 153
+P
Sbjct: 456 QIP 458
Score = 26.6 bits (58), Expect = 6.4
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 30/134 (22%)
Query: 28 HPTPPVVITTIFHTTTIHTTVFPPSVFTTSSAMLPGNAHWD----WVETVGDKYMAVSGL 83
+ T P+ ++ H + H + P + F +S + + + + + A
Sbjct: 4 YSTRPLTLS---HGSLEHVLLVPTASFFIASQL------QEQFNKILPEPTEGF-AADDE 53
Query: 84 PVSCQDHARCIAR-LAHILDPVRPHLDLTFDNILA----HINTVY--------VLKTKPG 130
P + + + + L ++ V P FD +L Y +
Sbjct: 54 PTTPAE---LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 131 IMQTGAEECYSTLR 144
T + ++
Sbjct: 111 ENDTTLVKTKELIK 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.1
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 13/29 (44%)
Query: 141 STLRIKGQMLYVPESDLMIFLCYPSV-VN 168
++L+ LY +S P++ +
Sbjct: 27 ASLK-----LYADDSA-------PALAIK 43
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl
cyclase, lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 26.4 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 73 VGDKYMAVSGLPVSCQDHA-RCIA 95
+GD + + G P S QD A R +A
Sbjct: 63 MGDGILVLFGAPTSQQDDALRAVA 86
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 26.4 bits (58), Expect = 7.5
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 24 PNAIHPTPPVVITTIFHTTTIHTTVFPPSVFTTSSAMLPGNAHWDWVETVGDKYMAVSGL 83
P +++ PP T+ + + +H FP + + P G+ + G+
Sbjct: 17 PRSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGV 76
Query: 84 PVSCQDHARCIARLAHILD 102
A L +D
Sbjct: 77 ERGTPL-----AYLLSYVD 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.445
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,934,658
Number of extensions: 165076
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 18
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)