RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7229
         (183 letters)



>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 31.1 bits (69), Expect = 0.056
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 70  VETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPH 107
           V+TVGD +M  S  P +    A+ +       D     
Sbjct: 57  VKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNA 94


>d1qvea_ d.24.1.1 (A:) Pilin P1 {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 126

 Score = 26.6 bits (58), Expect = 0.99
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 29  PTPPVVITTIFHTTTIHTTVFPPSVFTTSSAMLPGNAHWDWVETVGDKYMAVSGLPVSCQ 88
            +    I      + + T +   ++  T      G+  W       +KY     LP +CQ
Sbjct: 65  ASGGCTIVATMKASDVATPLRGKTLTLTLGNADKGSYTWACTSNADNKY-----LPKTCQ 119

Query: 89  D 89
            
Sbjct: 120 T 120


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 25.9 bits (57), Expect = 2.9
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 96  RLAHILDPVRPHLDLTFDNILAHINTVY---VLKTKPGIMQTG 135
           R+  +   +  H DL  + +++ +  +Y   +    P I  TG
Sbjct: 112 RINGLQRQLE-HFDLQSETLMSAMAAIYVDVISPLGPRIQVTG 153


>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 91

 Score = 24.1 bits (52), Expect = 5.5
 Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 29  PTPPVVITTIFHTT--------TIHTTVFPPSVFTTSSAMLPGNAHWDWVETVGDKYMAV 80
           PTP  +     +          ++   +    V+  +  + P            D+ + V
Sbjct: 2   PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKN--IRPAGPGDLGGLKPYDRLLQV 59

Query: 81  SGLPVSCQDHARCIARLAHILDPVR 105
           + +     D    +  +A   + + 
Sbjct: 60  NHVRTRDFDCCLVVPLIAESGNKLD 84


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score = 24.8 bits (54), Expect = 7.6
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 67  WDWVETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPH 107
              VE   + Y+    +  + +D A     LAH  D   P 
Sbjct: 192 EAEVEETLEVYLKQCAMESTTEDIALIGLILAH--DGYHPI 230


>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 118

 Score = 23.8 bits (51), Expect = 8.6
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 63  GNAHWDWVETVGDKYMAVSGLPVSCQDHARCIARLAHILDPVRPHLDLT 111
           G A        GD+ MA++G  V+    A   A L    +     +DL 
Sbjct: 54  GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,473
Number of extensions: 31964
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)