BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy723
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAIL SP+ KL LS I ++I + + Y+R + P W+NSIRHNLSLNDCF+
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDF 185
K R GKG+YW++ P + D F G F
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSF 91
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAIL SP+ KL LS I ++I + + Y+R + P W+NSIRHNLSLNDCF+
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKG 183
K R GKG+YW++ P + D F G
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNG 90
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAI ++PE K+ L+ IYQ+I+D + ++R GW+NSIRHNLSLN+CF+
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDF 185
K R GKG YW++ P + + F+ G F
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAI +P L LS+IYQ+I+D + Y+R W+NSIRH+LS NDCF+
Sbjct: 3 KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDF 185
K RS + GKG YW++HP++ + F+ G +
Sbjct: 63 KVARSPDKPGKGSYWALHPSSGNMFENGCY 92
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 88.2 bits (217), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCF 156
PKP +SYI LI MAI S +L L++I +Y++ + +FR GWRNS+RHNLSLNDCF
Sbjct: 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCF 60
Query: 157 IKAGRSAN---GKGHYWSIHPANVDDFKKGDF 185
+K R + GK +YW ++P + F G F
Sbjct: 61 VKVLRDPSRPWGKDNYWMLNPNSEYTFADGVF 92
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SY LI AI +P+ +L L+ IY +I NY Y+RT GW+NSIRHNLSLN FI
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 158 KAGRSAN--GKGHYWSIHPAN 176
K RS GKG +W I PA+
Sbjct: 63 KVPRSQEEPGKGSFWRIDPAS 83
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SY LI AI +P+ +L L+ IY +I NY Y+RT GW+NSIRHNLSLN FI
Sbjct: 16 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 75
Query: 158 KAGRSAN--GKGHYWSIHPAN 176
K RS GKG +W I PA+
Sbjct: 76 KVPRSQEEPGKGSFWRIDPAS 96
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 96 EPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDC 155
E KP +SY LI AI S+ + +L LS IY +I +Y Y+RT GW+NSIRHNLSLN
Sbjct: 1 ESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 156 FIKAGRSAN--GKGHYWSIHPAN 176
FIK RS GKG +W I PA+
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDPAS 83
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFR-TRGPGWRNSIRHNLSLNDCF 156
+P +SY+ +I AI S+ ++ L DIY +I D++ YF+ PGW+NSIRHNLSL+D F
Sbjct: 18 RPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMF 77
Query: 157 IKAGRSANGKGHYWSIHPA 175
++ SANGK +W+IHP+
Sbjct: 78 VRET-SANGKVSFWTIHPS 95
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 88 PRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGW 142
PR S SY LI+ AI S+PE +L L+ IY++++ YF+ +G GW
Sbjct: 30 PRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGW 89
Query: 143 RNSIRHNLSLNDCFIKAGRSANGKGHYWSIHP 174
+NSIRHNLSL+ FIK A GK +W ++P
Sbjct: 90 KNSIRHNLSLHSKFIKVHNEATGKSSWWMLNP 121
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 88 PRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGW 142
PR S SY LI+ AI S+PE +L L+ IY++++ YF+ +G GW
Sbjct: 14 PRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGW 73
Query: 143 RNSIRHNLSLNDCFIKAGRSANGKGHYWSIHP 174
+NSIRHNLSL+ FIK A GK +W ++P
Sbjct: 74 KNSIRHNLSLHSKFIKVHNEATGKSSWWMLNP 105
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 102 SYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLSLNDCF 156
SY LI AI SS E +L LS IY++++ + YF+ +G GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 157 IKAGRSANGKGHYWSIHP 174
I+ GK +W ++P
Sbjct: 75 IRVQNEGTGKSSWWMLNP 92
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 102 SYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLSLNDCF 156
SY LI AI SSP+ +L LS IY++++ YF+ +G GW+NSIRHNLSL+ F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 157 IKAGRSANGKGHYWSIHP 174
++ GK +W I+P
Sbjct: 65 MRVQNEGTGKSSWWIINP 82
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 102 SYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLSLNDCF 156
SY LI AI SS E +L LS IY++++ + YF+ +G GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 157 IKAGRSANGKGHYWSIHP 174
I+ GK +W ++P
Sbjct: 75 IRVQNEGTGKSSWWMLNP 92
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 102 SYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLSLNDCF 156
SY LI AI SSP+ +L LS IY++++ YF+ +G GW+NSIRHNLSL+ F
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 72
Query: 157 IKAGRSANGKGHYWSIHP 174
++ GK +W I+P
Sbjct: 73 MRVQNEGTGKSSWWIINP 90
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
+P +Y LI AI+ S + +L L++IY + ++YFR W+N++RHNLSL+ CF+
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 158 KAGRSANGKGHYWSI 172
R N KG W++
Sbjct: 63 ---RVENVKGAVWTV 74
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 65.1 bits (157), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 96 EPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDC 155
E +P +Y LI AIL SPE +L L++IY + + YFR W+N++RHNLSL+
Sbjct: 2 EVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKY 61
Query: 156 FIKAGRSANGKGHYWSI 172
F+ R N KG W++
Sbjct: 62 FV---RVENVKGAVWTV 75
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
+P +Y LI AIL +PE + L++IY + +++FR W+N+IRHNLSL+ CF+
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFV 61
Query: 158 KAGRSANGKGHYWSI 172
R + KG W++
Sbjct: 62 ---RVESEKGAVWTV 73
>pdb|2KR0|A Chain A, A Proteasome Protein
Length = 411
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 257 DVDSLLA----PDHPASDLENTGKRQFDVDSLLAPDHPASDLENTDARKKLKP-----TS 307
D+ S+LA P PA G +Q D+ S+L P+ A L N D +++L P S
Sbjct: 270 DLQSILATMNVPAGPA------GGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGES 323
Query: 308 SPQTKVKHAASITDEVFER 326
PQT + ++T F++
Sbjct: 324 LPQTADEIQNTLTSPQFQQ 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,900,252
Number of Sequences: 62578
Number of extensions: 415279
Number of successful extensions: 776
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 21
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)