Query psy723
Match_columns 395
No_of_seqs 204 out of 831
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:24:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hdc_A Protein (transcription 100.0 1.3E-41 4.5E-46 283.6 2.1 94 97-190 1-96 (97)
2 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 4E-41 1.4E-45 286.1 4.7 98 97-194 2-101 (109)
3 1vtn_C HNF-3/FORK head DNA-rec 100.0 1.9E-41 6.3E-46 285.0 2.2 97 97-193 2-100 (102)
4 1kq8_A HFH-1, hepatocyte nucle 100.0 4.1E-41 1.4E-45 282.0 4.2 95 97-191 1-98 (100)
5 2c6y_A Forkhead box protein K2 100.0 1.7E-40 5.8E-45 283.0 0.8 97 94-190 12-110 (111)
6 3coa_C Forkhead box protein O1 100.0 4.9E-37 1.7E-41 263.8 4.3 83 95-177 8-95 (117)
7 3l2c_A Forkhead box protein O4 100.0 8.8E-37 3E-41 259.6 4.6 84 95-178 21-109 (110)
8 3bpy_A FORK head domain, forkh 100.0 9.2E-37 3.1E-41 248.9 4.5 79 95-173 2-85 (85)
9 2a07_F Forkhead box protein P2 100.0 1.2E-36 4E-41 252.3 -0.1 76 97-175 2-77 (93)
10 1e17_A AFX; DNA binding domain 100.0 3.6E-36 1.2E-40 267.9 2.8 92 95-189 37-133 (150)
11 3g73_A Forkhead box protein M1 100.0 9.7E-35 3.3E-39 256.8 4.3 93 94-187 14-108 (142)
12 1uss_A Histone H1; DNA binding 80.9 1.6 5.4E-05 35.1 4.1 32 102-133 9-41 (88)
13 1uhm_A Histone H1, histone HHO 78.5 1.3 4.6E-05 34.6 2.9 33 102-134 6-39 (78)
14 1hst_A Histone H5; chromosomal 76.8 2.1 7.1E-05 34.7 3.7 32 102-133 9-41 (90)
15 1ust_A Histone H1; DNA binding 73.6 2.2 7.7E-05 34.7 3.1 33 102-134 9-42 (93)
16 2rqp_A Heterochromatin protein 70.8 1.5 5E-05 35.2 1.4 34 102-135 11-45 (88)
17 2lso_A Histone H1X; structural 59.2 2.7 9.2E-05 33.5 0.0 33 101-133 6-39 (83)
18 1ghc_A GH1; chromosomal protei 32.3 6.7 0.00023 30.1 -0.9 30 102-131 5-35 (75)
19 3rsn_A SET1/ASH2 histone methy 23.8 59 0.002 29.5 3.6 70 97-166 65-150 (177)
No 1
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.3e-41 Score=283.64 Aligned_cols=94 Identities=53% Similarity=0.995 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeeecC
Q psy723 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSIHP 174 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~WtldP 174 (395)
.||||||++||+|||++||+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|. .+|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 499999999999999999999999999999999999999999999999999999999999999986 479999999999
Q ss_pred Cchhhhccccchhhhh
Q psy723 175 ANVDDFKKGDFRRRKA 190 (395)
Q Consensus 175 ~~~~~f~~g~~rRRk~ 190 (395)
++.++|++|.++||++
T Consensus 81 ~~~~~f~~g~~~rrr~ 96 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRK 96 (97)
T ss_dssp THHHHHHHSCCCSSSC
T ss_pred CHHHHHhCCCccCCCC
Confidence 9999999999987764
No 2
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4e-41 Score=286.09 Aligned_cols=98 Identities=52% Similarity=0.953 Sum_probs=87.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeeecC
Q psy723 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSIHP 174 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~WtldP 174 (395)
+||||||++||+|||++||+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|+ .+|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 699999999999999999999999999999999999999999999999999999999999999986 479999999999
Q ss_pred CchhhhccccchhhhhHHHH
Q psy723 175 ANVDDFKKGDFRRRKAQRKV 194 (395)
Q Consensus 175 ~~~~~f~~g~~rRRk~~rk~ 194 (395)
++.++|++|.++||+++++.
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~~ 101 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFKR 101 (109)
T ss_dssp TCCHHHHSSSCC--------
T ss_pred cHHHHHhCCCcccCcccccc
Confidence 99999999999888876543
No 3
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=1.9e-41 Score=285.01 Aligned_cols=97 Identities=49% Similarity=0.938 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeeecC
Q psy723 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSIHP 174 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~WtldP 174 (395)
+||||||++||+|||++||+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|. .+|||+||+|+|
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p 81 (102)
T 1vtn_C 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHP 81 (102)
T ss_dssp CCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECG
T ss_pred cCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECc
Confidence 699999999999999999999999999999999999999999999999999999999999999985 479999999999
Q ss_pred CchhhhccccchhhhhHHH
Q psy723 175 ANVDDFKKGDFRRRKAQRK 193 (395)
Q Consensus 175 ~~~~~f~~g~~rRRk~~rk 193 (395)
++.++|++|.++||+++.+
T Consensus 82 ~~~~~f~~g~~~rr~~~~~ 100 (102)
T 1vtn_C 82 SSGNMFENGCYLRRQKRFK 100 (102)
T ss_dssp GGCSTTCSSCSSSCSSCCC
T ss_pred CHHHHhhcCCeeccccccc
Confidence 9999999999988876543
No 4
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.1e-41 Score=282.04 Aligned_cols=95 Identities=48% Similarity=0.911 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcCC---CCCcceeeec
Q psy723 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSA---NGKGHYWSIH 173 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~~---~GKG~~Wtld 173 (395)
+||||||++||+|||++||+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|.. .|||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999863 3999999999
Q ss_pred CCchhhhccccchhhhhH
Q psy723 174 PANVDDFKKGDFRRRKAQ 191 (395)
Q Consensus 174 P~~~~~f~~g~~rRRk~~ 191 (395)
|++.++|++|.++||+++
T Consensus 81 p~~~~~f~~g~~~rrr~r 98 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYR 98 (100)
T ss_dssp C-----------------
T ss_pred cCHHHHHhCCCcccCCCC
Confidence 999999999999887765
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=1.7e-40 Score=282.98 Aligned_cols=97 Identities=47% Similarity=0.844 Sum_probs=91.1
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceee
Q psy723 94 SEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWS 171 (395)
Q Consensus 94 ~~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~Wt 171 (395)
....||||||++||+|||++||+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|. .+|||+||+
T Consensus 12 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~ 91 (111)
T 2c6y_A 12 GSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWR 91 (111)
T ss_dssp --CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEE
Confidence 357899999999999999999999999999999999999999999999999999999999999999985 479999999
Q ss_pred ecCCchhhhccccchhhhh
Q psy723 172 IHPANVDDFKKGDFRRRKA 190 (395)
Q Consensus 172 ldP~~~~~f~~g~~rRRk~ 190 (395)
|+|++.++|.+|.+|||++
T Consensus 92 l~p~~~~~~~~~~~r~rr~ 110 (111)
T 2c6y_A 92 IDPASESKLIEQAFRKRRP 110 (111)
T ss_dssp ECHHHHHHHHHHHTCCCCC
T ss_pred eChhHHHhhhcccccccCC
Confidence 9999999999999987764
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=4.9e-37 Score=263.85 Aligned_cols=83 Identities=41% Similarity=0.774 Sum_probs=77.4
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCC-----CCccccccccccccchhcccCcCCCCCcce
Q psy723 95 EEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLSLNDCFIKAGRSANGKGHY 169 (395)
Q Consensus 95 ~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~-----~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~ 169 (395)
...||||||++||+|||+++|+++|||+|||+||+++||||+.++ .|||||||||||||+||+||++++.|||+|
T Consensus 8 ~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~~~GKg~~ 87 (117)
T 3coa_C 8 RNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSW 87 (117)
T ss_dssp CBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCSSTTCCCE
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccCCCCCcce
Confidence 567999999999999999999999999999999999999999875 799999999999999999999988999999
Q ss_pred eeecCCch
Q psy723 170 WSIHPANV 177 (395)
Q Consensus 170 WtldP~~~ 177 (395)
|+|+|++.
T Consensus 88 W~l~p~~~ 95 (117)
T 3coa_C 88 WMLNPEGG 95 (117)
T ss_dssp EEECC---
T ss_pred EEECcccc
Confidence 99999864
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=8.8e-37 Score=259.64 Aligned_cols=84 Identities=40% Similarity=0.778 Sum_probs=76.2
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccC-----CCCccccccccccccchhcccCcCCCCCcce
Q psy723 95 EEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTR-----GPGWRNSIRHNLSLNDCFIKAGRSANGKGHY 169 (395)
Q Consensus 95 ~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~-----~~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~ 169 (395)
...||||||++||+|||++||+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|+..|||+|
T Consensus 21 ~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKG~~ 100 (110)
T 3l2c_A 21 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSW 100 (110)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCE
T ss_pred CCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCCCCCCCce
Confidence 56899999999999999999999999999999999999999986 4799999999999999999999999999999
Q ss_pred eeecCCchh
Q psy723 170 WSIHPANVD 178 (395)
Q Consensus 170 WtldP~~~~ 178 (395)
|+|+|++.+
T Consensus 101 W~l~p~~~~ 109 (110)
T 3l2c_A 101 WMLNPEGGK 109 (110)
T ss_dssp EEEC-----
T ss_pred EEECccccC
Confidence 999998743
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=248.92 Aligned_cols=79 Identities=42% Similarity=0.805 Sum_probs=75.3
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccC-----CCCccccccccccccchhcccCcCCCCCcce
Q psy723 95 EEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTR-----GPGWRNSIRHNLSLNDCFIKAGRSANGKGHY 169 (395)
Q Consensus 95 ~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~-----~~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~ 169 (395)
..+||||||++||+|||++||+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|+.+|||+|
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKg~~ 81 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSW 81 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCE
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCCCCCCCCc
Confidence 35799999999999999999999999999999999999999986 4699999999999999999999999999999
Q ss_pred eeec
Q psy723 170 WSIH 173 (395)
Q Consensus 170 Wtld 173 (395)
|+||
T Consensus 82 W~ld 85 (85)
T 3bpy_A 82 WMLN 85 (85)
T ss_dssp EEEC
T ss_pred eecC
Confidence 9996
No 9
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=1.2e-36 Score=252.27 Aligned_cols=76 Identities=37% Similarity=0.840 Sum_probs=73.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcCCCCCcceeeecCC
Q psy723 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPA 175 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~WtldP~ 175 (395)
+||||||++||+|||++||+++|||+|||+||+++|||||.+..|||||||||||||+||+||+ .|||+||+|+|+
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~---~gkG~~W~l~~~ 77 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVE---NVKGAVWTVDEV 77 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEE---CSSSEECCBCHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecC---CCCCCeeEEChH
Confidence 6999999999999999999999999999999999999999999999999999999999999997 489999999975
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=3.6e-36 Score=267.91 Aligned_cols=92 Identities=41% Similarity=0.779 Sum_probs=78.8
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccC-----CCCccccccccccccchhcccCcCCCCCcce
Q psy723 95 EEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTR-----GPGWRNSIRHNLSLNDCFIKAGRSANGKGHY 169 (395)
Q Consensus 95 ~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~-----~~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~ 169 (395)
...||||||++||+|||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|+..|||+|
T Consensus 37 rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r~~~GKG~~ 116 (150)
T 1e17_A 37 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSW 116 (150)
T ss_dssp CCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECCTTTSSSCE
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCCCCCCCcce
Confidence 56799999999999999999999999999999999999999975 3899999999999999999999988999999
Q ss_pred eeecCCchhhhccccchhhh
Q psy723 170 WSIHPANVDDFKKGDFRRRK 189 (395)
Q Consensus 170 WtldP~~~~~f~~g~~rRRk 189 (395)
|+|+|++. ..|..+||+
T Consensus 117 W~ldp~~~---~~gk~~Rrr 133 (150)
T 1e17_A 117 WMLNPEGG---KSGKAPRRR 133 (150)
T ss_dssp EEECTTCC------------
T ss_pred EEECcccc---cCCcccccc
Confidence 99999864 344444443
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=256.78 Aligned_cols=93 Identities=43% Similarity=0.822 Sum_probs=81.3
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCcccc-CCCCccccccccccccchhcccCcCCCCCcceeee
Q psy723 94 SEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRT-RGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSI 172 (395)
Q Consensus 94 ~~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~-~~~gWKNSIRHNLSlN~~FvKv~R~~~GKG~~Wtl 172 (395)
+...||||||++||+|||++||+++|||+|||+||+++|||||. +..|||||||||||||+||+|+. +..|||+||+|
T Consensus 14 ~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~-~~~GKg~~W~i 92 (142)
T 3g73_A 14 SVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET-SANGKVSFWTI 92 (142)
T ss_dssp CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE-CTTSCCEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC-CCCCCCceEEE
Confidence 46789999999999999999999999999999999999999998 88999999999999999999974 56899999999
Q ss_pred cCCchhhh-ccccchh
Q psy723 173 HPANVDDF-KKGDFRR 187 (395)
Q Consensus 173 dP~~~~~f-~~g~~rR 187 (395)
+|++...+ ..+.+++
T Consensus 93 ~p~~~~~l~~d~~~k~ 108 (142)
T 3g73_A 93 HPSANRYLTLDQVFKP 108 (142)
T ss_dssp CTTTCCCCCCC-----
T ss_pred Cccccccchhhhhhcc
Confidence 99996654 4444443
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=80.85 E-value=1.6 Score=35.13 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCC
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDNYS 133 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fP 133 (395)
+|..||..||....++ ..++..|..||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 6999999999886665 5899999999999976
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=78.49 E-value=1.3 Score=34.65 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCCc
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDNYSY 134 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fPY 134 (395)
+|..||..||....++ ..++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 6999999999875554 48999999999999773
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=76.75 E-value=2.1 Score=34.71 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCC
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDNYS 133 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fP 133 (395)
+|..||..||....++ ..++..|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 6999999999887665 4899999999999976
No 15
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=73.63 E-value=2.2 Score=34.72 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCCc
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDNYSY 134 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fPY 134 (395)
+|..||..||....++ ..++..|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 6999999999886665 58999999999999763
No 16
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=70.78 E-value=1.5 Score=35.16 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCCcc
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDNYSYF 135 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fPYy 135 (395)
+|..||..||..-.++ ..++..|..||+.+|+-+
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 6999999999764443 589999999999999843
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=59.15 E-value=2.7 Score=33.53 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCC
Q psy723 101 HSYIGLIAMAILSSPEM-KLVLSDIYQYILDNYS 133 (395)
Q Consensus 101 ySYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~fP 133 (395)
-+|..||..||..-.++ .-++..|..+|..+|.
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 48999999999886655 4788999999999874
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=32.28 E-value=6.7 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhcCCCC-CCCHHHHHHHHHhc
Q psy723 102 SYIGLIAMAILSSPEM-KLVLSDIYQYILDN 131 (395)
Q Consensus 102 SYa~LI~~AI~sSP~k-kLTLsEIY~~I~~~ 131 (395)
+|..||..||..-.++ ..++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 5999999999886554 47888899999988
No 19
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=23.79 E-value=59 Score=29.53 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=51.3
Q ss_pred CCCCCCHHHHHHHHHhc----------CCCCCCCHH-HHHHHHHhcCCcccc----CCCCccccccccccc-cchhcccC
Q psy723 97 PKPQHSYIGLIAMAILS----------SPEMKLVLS-DIYQYILDNYSYFRT----RGPGWRNSIRHNLSL-NDCFIKAG 160 (395)
Q Consensus 97 ~KPPySYa~LI~~AI~s----------SP~kkLTLs-EIY~~I~~~fPYyR~----~~~gWKNSIRHNLSl-N~~FvKv~ 160 (395)
.|=+.++..|+..||-+ .+.+-..+. ||.-||.++|-..-. ....|...|--.|+- +..|+.-.
T Consensus 65 ~R~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~~~ 144 (177)
T 3rsn_A 65 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKE 144 (177)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEEES
T ss_pred EeccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEecc
Confidence 35567788888777744 244556676 999999999998753 447999999999996 45887655
Q ss_pred cCCCCC
Q psy723 161 RSANGK 166 (395)
Q Consensus 161 R~~~GK 166 (395)
....|.
T Consensus 145 ~~~~g~ 150 (177)
T 3rsn_A 145 HPDPGS 150 (177)
T ss_dssp SCCTTC
T ss_pred CCCcCc
Confidence 444443
Done!