RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy723
(395 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 134 bits (338), Expect = 2e-39
Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAIL SP+ KL LS I ++I + + Y+R + P W+NSIRHNLSLNDCF+
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDFRRRKAQ 191
K R GKG+YW++ P + D F G F RR+ +
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 132 bits (333), Expect = 1e-38
Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SY LI AI +P+ +L L+ IY +I NY Y+RT GW+NSIRHNLSLN FI
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDFRRRKAQ 191
K RS GKG +W I PA+ + FR+R+ +
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 128 bits (323), Expect = 2e-37
Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
KP +SYI LI MAI ++PE K+ L+ IYQ+I+D + ++R GW+NSIRHNLSLN+CF+
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDF 185
K R GKG YW++ P + + F+ G F
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 116 bits (293), Expect = 5e-33
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRG-----PGWRNSIRHNLS 151
SY LI+ AI S+PE +L L+ IY++++ YF+ +G GW+NSIRHNLS
Sbjct: 4 AWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS 63
Query: 152 LNDCFIKAGRSANGKGHYWSIH 173
L+ FIK A GK +W ++
Sbjct: 64 LHSKFIKVHNEATGKSSWWMLN 85
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 113 bits (283), Expect = 1e-31
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 98 KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
+P +Y LI AI+ S + +L L++IY + ++YFR W+N++RHNLSL+ CF+
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61
Query: 158 KAGRSANGKGHYWSIHPANVDDFKKGDFRRRK 189
+ N KG W++ ++++R+
Sbjct: 62 R---VENVKGAVWTVDEV--------EYQKRR 82
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 111 bits (278), Expect = 5e-31
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 103 YIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS 162
YI LI MAI S +L L++I +Y++ + +FR GWRNS+RHNLSLNDCF+K R
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 163 AN---GKGHYWSIHP 174
+ GK +YW ++P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 27.0 bits (58), Expect = 3.4
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 168 HYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSVDDDNDSNSPPPLSPPLTFPNILFSS 227
NV + D K R + D N + + PN++ +
Sbjct: 118 MAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP 177
Query: 228 H 228
Sbjct: 178 W 178
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 26.0 bits (56), Expect = 6.2
Identities = 9/76 (11%), Positives = 15/76 (19%), Gaps = 5/76 (6%)
Query: 153 NDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSVDDDNDSNSPP 212
F + ++ A D ++ + G V P
Sbjct: 117 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA-YAGFDVFA----GEPN 171
Query: 213 PLSPPLTFPNILFSSH 228
PN H
Sbjct: 172 INEGYYDLPNTFLFPH 187
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 25.7 bits (55), Expect = 8.1
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 5/76 (6%)
Query: 153 NDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSVDDDNDSNSPP 212
I A K ++ A + VR GL V P
Sbjct: 112 TAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR-AAGLDVFA----TEPC 166
Query: 213 PLSPPLTFPNILFSSH 228
SP ++ + H
Sbjct: 167 TDSPLFELAQVVVTPH 182
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,448,331
Number of extensions: 67962
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 14
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.9 bits)