BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7230
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.9 bits (89), Expect = 0.046, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLCK 164
AEL+AI L L+ ++ + +VTDS+ +L +S+ + +P++ ++ +L K
Sbjct: 1063 AELMAILLALQDSKETVN----IVTDSQYALGVISSQPTQSESPIVQQIIE-----ELTK 1113
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE +D
Sbjct: 1114 KEQVYLTWVPAHKGIGGNEKID 1135
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 37.7 bits (86), Expect = 0.097, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 73 YTDGSKTPTTTGCAYSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTD 132
YTDG K + AY +R + N AEL A+ + L+ D P+ + ++TD
Sbjct: 966 YTDGGKKGSKAAAAYWREGKIRREVFPGTNQ--QAELKAVLMALQ---DGPA-KMNIITD 1019
Query: 133 SRSSLAALSNVRFTNPLITKVYSTWNYL--KLCKKD-ITFMWCPSHCGIKGNEIVDV--- 186
SR + + P W + +L +K+ + W P H GI GN VD
Sbjct: 1020 SRYAFEGMRE----EPETWGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQ 1075
Query: 187 -AARNPTTGTTPSKL 200
A + P T + P ++
Sbjct: 1076 KALQGPITVSLPQEI 1090
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.0 bits (84), Expect = 0.17, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 96 TLLNPVNSIFSAELIAIFLCLEAILDSPSGEFL-VVTDSRSSLAALSN--VRFTNPLITK 152
TL N N A+L AI + LE SG + +VTDS+ ++ L+ + +PL+ +
Sbjct: 1084 TLENTTNQ--QAKLTAIKMALE-----DSGPNVNIVTDSQYAMGILTAQPTQSDSPLVEQ 1136
Query: 153 VYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
+ + L + K+ I W P+H GI GNE +D
Sbjct: 1137 IIA----LMIQKQQIYLQWVPAHKGIGGNEEID 1165
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 36.6 bits (83), Expect = 0.25, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 68 NHTICYTDGSKTPTTTGCAYSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEF 127
N T YTDG K T Y +S + N AEL AI C+ A+LD P +
Sbjct: 1001 NLTTYYTDGGKKGKTAAAVYWCEGRTKSKVFPGTNQ--QAELKAI--CM-ALLDGPP-KM 1054
Query: 128 LVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLC---KKDITFMWCPSHCGIKGNEIV 184
++TDSR + + P W + K+ + W P+H GI GN
Sbjct: 1055 NIITDSRYAYEGMRE----EPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEA 1110
Query: 185 DVAARNPTTGTTPSKLCTPED 205
D + P C+P +
Sbjct: 1111 DEGVKKALEQMAP---CSPPE 1128
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 36.2 bits (82), Expect = 0.32, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 34/169 (20%)
Query: 24 VRFIPPWSNSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKTPTT- 82
V +IP W S P+ + L + SL ++ I + + Y DG+ + T
Sbjct: 1017 VSWIPEWEFVSTPLLVKL------------WYSLVKEPIKGE----DVYYVDGAASKVTK 1060
Query: 83 ---TGCAYSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFL-VVTDSRSSLA 138
G G L N N AEL A+ + LE SGE + +VTDS+ +
Sbjct: 1061 LGKAGYLSERGKSRIRELENTTNQ--QAELTAVKMALE-----DSGENVNIVTDSQYVMN 1113
Query: 139 ALSNV--RFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
L+ +PL+ ++ + K+ + W P+H GI GN +D
Sbjct: 1114 ILTACPQESNSPLVEQIIQAL----MKKRQVYLQWVPAHKGIGGNTEID 1158
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.8 bits (81), Expect = 0.37, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 18/85 (21%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYL 160
AEL AI+L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1059 AELQAIYLALQ---DSGS-EVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQL------- 1107
Query: 161 KLCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1108 -IQKERVYLSWVPAHKGIGGNEQVD 1131
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 35.8 bits (81), Expect = 0.38, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 73 YTDGSKT-PTTTGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSG-EFLV 129
Y DG+ T G A V N R +++ ++ EL AI+L L+ SG E +
Sbjct: 1028 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQ-----DSGLEVNI 1082
Query: 130 VTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
VTDS+ +L + R + L++++ +L KK+ ++ W P+H GI GNE VD
Sbjct: 1083 VTDSQYALGIIQAQPDRSESELVSQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1136
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 35.8 bits (81), Expect = 0.40, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLCK 164
AEL+A+ + L+ DS + +VTDS+ L +S+ + +P++ ++ +L K
Sbjct: 1065 AELMAVLIALQ---DSKE-QVNIVTDSQYVLGIISSQPTQSDSPIVQQIIE-----ELTK 1115
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE +D
Sbjct: 1116 KERVYLTWVPAHKGIGGNEKID 1137
>sp|Q49YL7|PCKA_STAS1 Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=pckA PE=3 SV=1
Length = 529
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 120 LDSPSGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIK 179
+D + E ++T + + + + + ++S NYL L K DI M C ++ G K
Sbjct: 170 IDGTNSETFIITSFKHKVILIGGTEYAGEMKKGIFSVINYL-LPKDDIMSMHCSANVGEK 228
Query: 180 GNEIVDVAARNPTTGTTPSKLC 201
G DVA +GT + L
Sbjct: 229 G----DVALFFGLSGTGKTTLS 246
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 35.4 bits (80), Expect = 0.55, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 42/171 (24%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + ++ P+V F Y DG+ T
Sbjct: 992 WIPEWEFVNTPPLVKLWY----QLETEPIVGAETF--------------YVDGAANRETK 1033
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL- 140
G A V + R +++ + EL AI L L+ DS S E +VTDS+ +L +
Sbjct: 1034 QGKAGYVTDKGRQKVISITETTNQKTELQAIHLALQ---DSGS-EVNIVTDSQYALGIIQ 1089
Query: 141 -----SNVRFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
S N +I + L KKD ++ W P+H GI GNE VD
Sbjct: 1090 AQPDKSESELVNQIIEQ---------LIKKDRVYLSWVPAHKGIGGNEQVD 1131
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 35.4 bits (80), Expect = 0.56, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 73 YTDG-SKTPTTTGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSG-EF 127
Y DG S T TG A V + R TL + N EL AI+L L SG E
Sbjct: 1025 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQ--KTELHAIYLALR-----DSGLEV 1077
Query: 128 LVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGN 181
+VTDS+ +L + S N +I ++ + K+ + W P+H GI GN
Sbjct: 1078 NIVTDSQYALGIIQAQPDKSESELVNQIIEEL--------IKKEKVYLSWVPAHKGIGGN 1129
Query: 182 EIVD 185
E VD
Sbjct: 1130 EQVD 1133
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 35.4 bits (80), Expect = 0.57, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 46/173 (26%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 997 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRETK 1038
Query: 83 TGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSG-EFLVVTDSRSSLA 138
G A V N R TL + N EL AI+L L+ SG E +VTDS+ +L
Sbjct: 1039 LGKAGYVTNRGRQKVVTLTDTTNQ--KTELQAIYLALQ-----DSGLEVNIVTDSQYALG 1091
Query: 139 AL------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
+ S N +I ++ + K+ + W P+H GI GNE VD
Sbjct: 1092 IIQAQPDQSESELVNQIIEQL--------IKKEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 35.4 bits (80), Expect = 0.60, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 42/171 (24%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 997 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRETK 1038
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAAL 140
G A V N R ++ N+ EL AI+L L+ SG E +VTDS+ +L +
Sbjct: 1039 LGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNIVTDSQYALGII 1093
Query: 141 ------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
S N +I ++ K+ + W P+H GI GNE VD
Sbjct: 1094 QAQPDKSESELVNQIIEQLIK--------KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.0 bits (79), Expect = 0.61, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLCK 164
AEL AI + LE DS + +VTDS+ ++ L+ + +PL+ ++ + + K
Sbjct: 1090 AELTAIKMALE---DS-GPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIAQ----MVQK 1141
Query: 165 KDITFMWCPSHCGIKGNEIVD 185
+ I W P+H GI GNE +D
Sbjct: 1142 EAIYLQWVPAHKGIGGNEEID 1162
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 35.0 bits (79), Expect = 0.61, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 42/171 (24%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 1009 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRETK 1050
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAAL 140
G A V N R ++ N+ EL AI+L L+ SG E +VTDS+ +L +
Sbjct: 1051 LGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNIVTDSQYALGII 1105
Query: 141 ------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
S N +I ++ K+ + W P+H GI GNE VD
Sbjct: 1106 QAQPDKSESELVNQIIEQLIK--------KEKVYLAWVPAHKGIGGNEQVD 1148
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 34.7 bits (78), Expect = 0.80, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYL 160
AEL AI L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1062 AELQAIQLALQ---DSRS-EVNIVTDSQYALGIIQAQPDRSEAELVNQIIEQL------- 1110
Query: 161 KLCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1111 -IKKEKVYLSWVPAHKGIGGNEQVD 1134
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 34.7 bits (78), Expect = 0.98, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 44/172 (25%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDG-SKTPTT 82
+IP W N+ P V L + ++ P+V F Y DG S T
Sbjct: 992 WIPEWEFVNTPPLVKLWY----QLETEPIVGAETF--------------YVDGASNRETK 1033
Query: 83 TGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAA 139
G A V + R +L N AEL AI L L+ DS S E +VTDS+ +L
Sbjct: 1034 KGKAGYVTDRGRQKAVSLTETTNQ--KAELQAIQLALQ---DSGS-EVNIVTDSQYALGI 1087
Query: 140 L------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
+ S N +I ++ + K+ + W P+H GI GNE VD
Sbjct: 1088 IQAQPDKSESELVNQIIEQL--------IKKEKVYLSWVPAHKGIGGNEQVD 1131
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 34.7 bits (78), Expect = 0.98, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 67 TNHTICYTDGSKTPTTTGCAYSVGN-VVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG 125
T+ YTDG K AY N + L PV AE +AI + LE D+
Sbjct: 617 TSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDK 672
Query: 126 EFLVVTDS----RSSLAALSNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGN 181
+ +VTDS ++ L NP + + K+ + F W P H GI GN
Sbjct: 673 QVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIRE-----KEIVYFAWVPGHKGIYGN 727
Query: 182 EIVDVAAR 189
++ D AA+
Sbjct: 728 QLADEAAK 735
>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3
Length = 7968
Score = 34.7 bits (78), Expect = 1.0, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 124 SGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKDITF------------MW 171
+GE+ VT + + A+L R T P +T V + +D+ F W
Sbjct: 4136 TGEYACVTGGQKTAASL---RVTEPEVTIVRGLVDAEVTADEDVEFSCEVSRAGATGVQW 4192
Query: 172 CPSHCGIKGNEIVDVAARNPTTGTTPSKLCTPED 205
C ++ NE+ +VA R+ T K TPED
Sbjct: 4193 CLQGLPLQSNEVTEVAVRDGRIHTLRLKGVTPED 4226
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 34.3 bits (77), Expect = 1.0, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 73 YTDG-SKTPTTTGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSG-EF 127
Y DG S T G A V + R TL + N EL AI+L L+ SG E
Sbjct: 1025 YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQ--KTELQAIYLALQ-----DSGIEV 1077
Query: 128 LVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGN 181
+VTDS+ +L + S N +I ++ + K+ + W P+H GI GN
Sbjct: 1078 NIVTDSQYALGIIQAQPDKSESELVNQIIEEL--------IKKEKVYLSWVPAHKGIGGN 1129
Query: 182 EIVD 185
E VD
Sbjct: 1130 EQVD 1133
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI L L+ DS S E +VTDS+ +L + S N +I K+
Sbjct: 1058 ELHAIHLALQ---DSGS-EVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIE------ 1107
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
K+ + W P+H GI GNE VD
Sbjct: 1108 --KEKVYLSWVPAHKGIGGNEQVD 1129
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFL-VVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLC 163
AEL+AI + LE SG + +VTDS+ ++ L+ + +PLI ++ + L +
Sbjct: 1091 AELMAIKMALE-----DSGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIA----LMVQ 1141
Query: 164 KKDITFMWCPSHCGIKGNEIVD 185
K I W P+ GI GNE +D
Sbjct: 1142 KHQIYLQWVPADKGIGGNEEID 1163
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYL 160
AEL AI L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1059 AELQAICLALQ---DSGS-EVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQL------- 1107
Query: 161 KLCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ I W P+H GI GNE VD
Sbjct: 1108 -IKKERIYLSWVPAHKGIGGNEQVD 1131
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 46/173 (26%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ + T
Sbjct: 1009 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAASRETK 1050
Query: 83 TGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSG-EFLVVTDSRSSLA 138
G A V N R TL + N EL AI L L+ SG E +VTDS+ +L
Sbjct: 1051 LGKAGYVTNRGRQKVVTLTDTTNQ--KTELQAIHLALQ-----DSGLEVNIVTDSQYALG 1103
Query: 139 AL------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
+ S N +I ++ + K+ + W P+H GI GNE VD
Sbjct: 1104 IIQAQPDKSESELVNQIIEQL--------IKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 98 LNPVNSIFSAELIAIFLCLEAILDSPSGEFL-VVTDSRSSLAALSN--VRFTNPLITKVY 154
LN N EL A+ L LE SG ++ +VTDS+ + L++ +P++ ++
Sbjct: 1066 LNTTNQ--QTELHAVKLALE-----DSGSYVNIVTDSQYVVGILASRPTETDHPIVKEII 1118
Query: 155 STWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
L K+ I W P+H GI GNE +D
Sbjct: 1119 E----LMKGKEKIYLSWLPAHKGIGGNEQID 1145
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.9 bits (76), Expect = 1.7, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 67 TNHTICYTDGSKTPTTTGCAYSVGN-VVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG 125
T+ YTDG K AY N + L PV AE +AI + LE D+
Sbjct: 618 TSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDK 673
Query: 126 EFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKD--ITFMWCPSHCGIKGNEI 183
+ +VTDS N+ L W ++ ++ + F W P H GI GN++
Sbjct: 674 QVNIVTDS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQL 730
Query: 184 VDVAAR 189
D AA+
Sbjct: 731 ADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.9 bits (76), Expect = 1.7, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 67 TNHTICYTDGSKTPTTTGCAYSVGN-VVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG 125
T+ YTDG K AY N + L PV AE +AI + LE D+
Sbjct: 618 TSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDK 673
Query: 126 EFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKD--ITFMWCPSHCGIKGNEI 183
+ +VTDS N+ L W ++ ++ + F W P H GI GN++
Sbjct: 674 QVNIVTDS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQL 730
Query: 184 VDVAAR 189
D AA+
Sbjct: 731 ADEAAK 736
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.5 bits (75), Expect = 2.0, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 46/173 (26%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ + T
Sbjct: 1009 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAASRETK 1050
Query: 83 TGCAYSVGNVVRS---TLLNPVNSIFSAELIAIFLCLEAILDSPSG-EFLVVTDSRSSLA 138
G A V N R TL + N EL AI L L+ SG E +VTDS+ +L
Sbjct: 1051 LGKAGYVTNRGRQKVVTLTHTTNQ--KTELQAIHLALQ-----DSGLEVNIVTDSQYALG 1103
Query: 139 AL------SNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVD 185
+ S N +I ++ + K+ + W P+H GI GNE VD
Sbjct: 1104 IIQAQPDKSESELVNQIIEQL--------IKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 33.5 bits (75), Expect = 2.0, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 42/171 (24%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + ++ P+V F Y DG+ T
Sbjct: 1002 WIPEWEFVNTPPLVKLWY----QLETEPIVGAETF--------------YVDGAANRETK 1043
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL- 140
G A V + R +++ + EL AI L L+ DS S E +VTDS+ +L +
Sbjct: 1044 KGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQ---DSGS-EVNIVTDSQYALGIIQ 1099
Query: 141 -----SNVRFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
S N +I + L +KD ++ W P+H GI GNE VD
Sbjct: 1100 AQPDKSESEIVNQIIEQ---------LIQKDKVYLSWVPAHKGIGGNEQVD 1141
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.5 bits (75), Expect = 2.1, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1060 ELQAIHLALQ---DSGS-EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL-------- 1107
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1108 IQKEKVYLSWVPAHKGIGGNEQVD 1131
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 33.5 bits (75), Expect = 2.2, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI L L+ DS S E +VTDS+ +L + S N +I ++ S
Sbjct: 1069 ELQAIQLALQ---DSGS-EVNIVTDSQYALGIILAQPDKSESEIVNQIIEQLIS------ 1118
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
K+ + W P+H GI GNE VD
Sbjct: 1119 --KERVYLSWVPAHKGIGGNEQVD 1140
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 1003 WIPEWEVVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRETK 1044
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAAL 140
G A V N R +++ ++ EL AI L L+ SG E +VTDS+ +L +
Sbjct: 1045 KGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQ-----DSGLEVNIVTDSQYALGII 1099
Query: 141 SNV--RFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
+ + L++++ +L KK+ ++ W P+H GI GNE VD
Sbjct: 1100 QAQPDKSESELVSQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1142
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 33.1 bits (74), Expect = 2.8, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 73 YTDGSKTPTTTGCAYSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTD 132
Y DGS+ A N + ++ S AE+ A+ L L+A S E ++TD
Sbjct: 598 YIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEVQALLLALKA----GSEEMNIITD 653
Query: 133 SRSSLAALSNVRFTNPLITKVYSTWNYL--KLCKKDITFM-WCPSHCGIKGNEIVD 185
S+ L N+ P + + W + ++ KK F+ W P H GI GNE VD
Sbjct: 654 SQYIL----NILNQQPDLME--GLWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVD 703
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 32.7 bits (73), Expect = 3.4, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCK 164
AEL A+ L L+ DS + +VTDS+ + L + + +P++ ++ KL +
Sbjct: 1091 AELWAVDLALK---DS-GAQVNIVTDSQYVMGVLQGLPDQSDSPIVEQIIQ-----KLTQ 1141
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K ++ W P+H GI GNE VD
Sbjct: 1142 KTAIYLAWVPAHKGIGGNEEVD 1163
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 32.7 bits (73), Expect = 3.4, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 20/85 (23%)
Query: 108 ELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYL 160
EL AI+L L+ SG E +VTDS+ +L + S N +I ++
Sbjct: 1065 ELQAIYLALQ-----DSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL------- 1112
Query: 161 KLCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1113 -IKKEKVYLSWVPAHKGIGGNEQVD 1136
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.7 bits (73), Expect = 3.6, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCK 164
AEL AI L L+ DS E +VTDS+ +L + R + L+ ++ +L K
Sbjct: 1064 AELHAIQLALQ---DSRP-EVNIVTDSQYALGIIQAQPDRSGSELVNQIIE-----QLIK 1114
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE VD
Sbjct: 1115 KEKVYLSWVPAHKGIGGNEQVD 1136
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYL--KLCK 164
AE+ A+ L L+A P E ++TDS+ + LS P K+ W + +L K
Sbjct: 633 AEIQALLLALKA---GPE-EMNIITDSQYMINILSQ----QP--DKMEGIWQEVLEELEK 682
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K F+ W P H GI GNE VD
Sbjct: 683 KTAIFIDWVPGHKGIPGNEEVD 704
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 32.3 bits (72), Expect = 4.6, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 40/170 (23%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKTPTT- 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 1001 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRETK 1042
Query: 83 ---TGCAYSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG-EFLVVTDSRSSLA 138
G S G +L + N EL AI L L+ SG E +VTDS+ +L
Sbjct: 1043 LGKAGYVTSRGRQKVVSLTDTTNQ--KTELQAIHLALQ-----DSGLEVNIVTDSQYALG 1095
Query: 139 ALSNV--RFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
+ + + L++++ +L KK+ ++ W P+H GI GNE VD
Sbjct: 1096 IIQAQPDKSESELVSQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1140
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 73 YTDGSKTPTTT-GCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSGEFLVV 130
Y DG+ T G A V + R +++ N+ AEL AI L L+ E +V
Sbjct: 1038 YVDGAANKETKLGKAGFVTDRGRQKVVSIENTTNQKAELQAILLALQ----ESGQEANIV 1093
Query: 131 TDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
TDS+ ++ + + + + L+ ++ +L KK+ ++ W P+H GI GNE VD
Sbjct: 1094 TDSQYAMGIIHSQPDKSESDLVGQIIE-----ELIKKERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1064 ELQAIQLALQ---DSGS-EVNIVTDSQYALGIIQAHPDKSESEIVNQIIEQL-------- 1111
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1112 IQKERVYLSWVPAHKGIGGNEQVD 1135
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 32.3 bits (72), Expect = 5.0, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI L L+ DS S E +VTDS+ +L + S N +I ++
Sbjct: 1061 ELQAIQLALQ---DSGS-EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL-------- 1108
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE VD
Sbjct: 1109 IKKERVYLSWVPAHKGIGGNEQVD 1132
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 32.0 bits (71), Expect = 5.6, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 108 ELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYLK 161
EL AI+L L+ E +VTDS+ +L + S N +I ++
Sbjct: 1066 ELQAIYLALQ----ESGPEVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL-------- 1113
Query: 162 LCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ W P+H GI GNE VD
Sbjct: 1114 IKKEKFYLSWVPAHKGIGGNEQVD 1137
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.0 bits (71), Expect = 5.7, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 36/168 (21%)
Query: 26 FIPPWS--NSSPPVDLSLCDGKKCDSAPVVFQSLFRDVINSKYTNHTICYTDGSKT-PTT 82
+IP W N+ P V L + + P+V F Y DG+ T
Sbjct: 997 WIPEWEFVNTPPLVKLWY----QLEKEPIVGAETF--------------YVDGAANRDTK 1038
Query: 83 TGCAYSVGNVVRSTLLNPVNSIFS-AELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAAL 140
+G A V + R +++ ++ EL AI L L+ SG E +VTDS+ +L +
Sbjct: 1039 SGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ-----DSGLEVNIVTDSQYALGII 1093
Query: 141 SNV--RFTNPLITKVYSTWNYLKLCKKDITFM-WCPSHCGIKGNEIVD 185
+ + L++++ +L KK+ ++ W P+H GI GNE VD
Sbjct: 1094 QAQPDKSESELVSQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1136
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 15 TQTSVIAPYVRFIPPWSNSSPPVD-----LSLCDGKKCDSAPVVFQSLFRDVINSKYTNH 69
TQT + Y F P SN ++ L LC+G D AP+ F + D+I ++
Sbjct: 139 TQTQNLKDYSSFFPMESNLPKVIEEECSGLDLCEGINLDDAPLNFNA-SNDIIGCSSLDN 197
Query: 70 TICY 73
T CY
Sbjct: 198 TKCY 201
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYL--KLCK 164
AE+ A+ L L+A S E ++TDS+ + N+ P + + W + +L K
Sbjct: 633 AEIQALLLALKA----GSEEMNIITDSQYVI----NIILQQPDMME--GIWQEVLEELEK 682
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K F+ W P H GI GNE VD
Sbjct: 683 KTAIFIDWVPGHKGIPGNEEVD 704
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL------SNVRFTNPLITKVYSTWNYL 160
AEL AI L L+ DS E +VTDS+ +L + S N +I ++
Sbjct: 1063 AELQAIQLALQ---DSEV-EVNIVTDSQYALGIIQGQPDTSESEIVNQIIEEL------- 1111
Query: 161 KLCKKDITFMWCPSHCGIKGNEIVD 185
+ K+ + W P+H GI GNE +D
Sbjct: 1112 -IKKEKVYLSWVPAHKGIGGNEQID 1135
>sp|Q9A0A5|CCA_STRP1 CCA-adding enzyme OS=Streptococcus pyogenes serotype M1 GN=cca PE=3
SV=2
Length = 402
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 216 SEWQSLWDNIPNTNKLKNIRPSIKAWKTSDQDKRFQ----ELAGNRRERPYHKSVKAPNS 271
S++ W + + +++ + +KAWKTS+ +R+ L R+ER + K
Sbjct: 253 SDYHQAWAYVMISLAIEDPKSFLKAWKTSNDFQRYVTKLIALYRIRQERSFEKLDIYQYG 312
Query: 272 KKRASIASNRKKAR 285
KK AS+ + +KA+
Sbjct: 313 KKMASLVEDLRKAQ 326
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 31.6 bits (70), Expect = 8.3, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 14/82 (17%)
Query: 108 ELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCK 164
EL AI L L+ SG E +VTDS+ +L + + + L++++ +L K
Sbjct: 1066 ELQAIHLALQ-----DSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIE-----QLIK 1115
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE VD
Sbjct: 1116 KEKVYLAWVPAHKGIGGNEQVD 1137
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 31.2 bits (69), Expect = 8.9, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 14/82 (17%)
Query: 108 ELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCK 164
EL AI L L+ SG E +VTDS+ +L + + + L++++ +L K
Sbjct: 1065 ELQAIHLALQ-----DSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIE-----QLIK 1114
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE VD
Sbjct: 1115 KEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 31.2 bits (69), Expect = 8.9, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 14/82 (17%)
Query: 108 ELIAIFLCLEAILDSPSG-EFLVVTDSRSSLAALSNV--RFTNPLITKVYSTWNYLKLCK 164
EL AI L L+ SG E +VTDS+ +L + + + L++++ +L K
Sbjct: 1067 ELQAIHLALQ-----DSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIE-----QLIK 1116
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE VD
Sbjct: 1117 KEKVYLAWVPAHKGIGGNEQVD 1138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,386,915
Number of Sequences: 539616
Number of extensions: 4810319
Number of successful extensions: 10817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 10811
Number of HSP's gapped (non-prelim): 65
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)