Query psy7230
Match_columns 306
No_of_seqs 262 out of 1283
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:25:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 6.9E-25 2.4E-29 184.4 12.1 130 65-195 3-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 2.9E-24 9.8E-29 180.2 12.2 125 65-194 8-147 (150)
3 2kq2_A Ribonuclease H-related 99.9 2.6E-24 8.9E-29 179.8 4.6 128 66-197 3-140 (147)
4 3h08_A RNH (ribonuclease H); R 99.9 1.3E-23 4.3E-28 174.9 8.5 123 68-194 3-144 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.9 3.9E-23 1.3E-27 174.0 8.7 125 68-196 3-145 (155)
6 3p1g_A Xenotropic murine leuke 99.9 8.9E-23 3E-27 173.7 10.9 125 68-196 22-158 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 5.8E-23 2E-27 173.5 8.6 123 68-194 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 4.2E-23 1.4E-27 175.8 6.6 127 67-196 6-150 (166)
9 2lsn_A Reverse transcriptase; 99.8 3.4E-21 1.2E-25 163.8 10.7 126 67-193 5-162 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 3.9E-20 1.3E-24 151.4 10.4 123 68-194 2-137 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 7.2E-20 2.5E-24 150.4 11.6 123 69-195 3-134 (141)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 8.3E-20 2.8E-24 182.4 12.3 119 65-192 432-555 (555)
13 2zd1_A Reverse transcriptase/r 99.8 9.7E-20 3.3E-24 182.0 9.5 118 65-191 435-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.8 4.9E-19 1.7E-23 147.4 10.6 122 69-195 1-135 (149)
15 1zbf_A Ribonuclease H-related 99.4 1.2E-13 4.3E-18 114.2 3.5 121 65-186 7-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 5.4E-11 1.9E-15 97.1 5.3 76 67-144 3-84 (134)
17 1rw3_A POL polyprotein; RNA an 84.4 0.16 5.6E-06 48.6 -0.5 74 67-143 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 64.1 22 0.00076 33.4 8.4 85 52-137 297-400 (428)
19 2nx8_A TRNA-specific adenosine 37.5 30 0.001 28.6 4.0 51 81-131 36-90 (179)
20 1wkq_A Guanine deaminase; doma 32.8 40 0.0014 27.5 3.9 51 81-131 32-86 (164)
21 2b3j_A TRNA adenosine deaminas 30.6 58 0.002 26.2 4.6 50 82-131 28-81 (159)
22 2a8n_A Cytidine and deoxycytid 30.3 38 0.0013 26.7 3.4 50 82-131 25-78 (144)
23 1wwr_A TRNA adenosine deaminas 30.1 47 0.0016 27.2 3.9 51 81-131 43-97 (171)
24 2zd1_A Reverse transcriptase/r 28.0 2.3E+02 0.0078 27.3 9.1 90 52-142 299-407 (557)
25 1z3a_A TRNA-specific adenosine 27.2 50 0.0017 26.9 3.6 50 82-131 30-83 (168)
26 3dh1_A TRNA-specific adenosine 21.4 85 0.0029 26.1 4.0 40 81-120 46-89 (189)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.92 E-value=6.9e-25 Score=184.36 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=99.6
Q ss_pred cCCCcEEEEEcCCCCCCc-----cceEEEeCC---eEEEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHH
Q psy7230 65 KYTNHTICYTDGSKTPTT-----TGCAYSVGN---VVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSS 136 (306)
Q Consensus 65 ~~~~~~~iyTDGS~~~~g-----~G~av~~~~---~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sa 136 (306)
+..+.+.||||||+..++ +|+|++... ...+..+...+|++.||+.|++.||+.+.+.+..+|.|+|||+++
T Consensus 3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v 82 (154)
T 2qkb_A 3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT 82 (154)
T ss_dssp EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence 456789999999998543 688876432 123445655789999999999999999998888999999999999
Q ss_pred HHHHhccc---------cCCh--h-HHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCC
Q psy7230 137 LAALSNVR---------FTNP--L-ITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGT 195 (306)
Q Consensus 137 l~~l~~~~---------~~s~--~-~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~ 195 (306)
++.|+.+. ...+ . -.+++..+..+. .+..|.|.|||||+|++|||+||+|||+|+..+
T Consensus 83 i~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~-~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 83 INGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLT-QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHH-TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHH-cCCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99998742 1111 1 123333333332 356799999999999999999999999998764
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.91 E-value=2.9e-24 Score=180.18 Aligned_cols=125 Identities=24% Similarity=0.310 Sum_probs=92.1
Q ss_pred cCCCcEEEEEcCCCCCCc--cceEEEe-CCeEEEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 65 KYTNHTICYTDGSKTPTT--TGCAYSV-GNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 65 ~~~~~~~iyTDGS~~~~g--~G~av~~-~~~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
+..+.+.||||||+..++ .|+|++. .+......+ ..+|+++||+.|++.||+.+ ..++.|+|||++++++|+
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 667889999999997542 6777543 222223333 46899999999999999985 479999999999999998
Q ss_pred cccc---CC--------hh-HHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCC
Q psy7230 142 NVRF---TN--------PL-ITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTG 194 (306)
Q Consensus 142 ~~~~---~s--------~~-~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 194 (306)
.+.. .. +. -.+++..+..+......|.|.|||||+|++|||+||+||++|++.
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 8621 11 11 112222222112357899999999999999999999999999976
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.89 E-value=2.6e-24 Score=179.75 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=94.6
Q ss_pred CCCcEEEEEcCCCCCCccceEEE--eCCeE--EEE-cC--CC--CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHH
Q psy7230 66 YTNHTICYTDGSKTPTTTGCAYS--VGNVV--RST-LL--NP--VNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSS 136 (306)
Q Consensus 66 ~~~~~~iyTDGS~~~~g~G~av~--~~~~~--~~~-~l--~~--~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sa 136 (306)
+.+.+.||||||+.++.+|+|++ ..+.. ... .+ +. .+||++||+.|++.||+++.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 45679999999999866888854 34432 222 22 22 369999999999999999877666 99999999988
Q ss_pred HHHHhccccC-ChhHHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCCCC
Q psy7230 137 LAALSNVRFT-NPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGTTP 197 (306)
Q Consensus 137 l~~l~~~~~~-s~~~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~~ 197 (306)
...+.+.... .+......+.++.| ...|.|.|||||+|++|||+||+|||+|+....+
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l---~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQY---RGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGG---STTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhCCCccCCcchHHHHHHHHHh---cCCeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 8777664332 23333333333333 2289999999999999999999999999988654
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.89 E-value=1.3e-23 Score=174.93 Aligned_cols=123 Identities=21% Similarity=0.206 Sum_probs=88.9
Q ss_pred CcEEEEEcCCCCCCc--cceEEE--eCCeEE--EEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 68 NHTICYTDGSKTPTT--TGCAYS--VGNVVR--STLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 68 ~~~~iyTDGS~~~~g--~G~av~--~~~~~~--~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
..++||||||+..++ .|+|++ .++... +..+ ..+|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999998653 677754 444322 2222 3679999999999999999976 689999999999999998
Q ss_pred c-cc---------cCC--hh-HHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCC
Q psy7230 142 N-VR---------FTN--PL-ITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTG 194 (306)
Q Consensus 142 ~-~~---------~~s--~~-~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 194 (306)
. +. ... +. -.+++..+..+.. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 7 31 111 11 1233333332322 3579999999999999999999999999864
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.88 E-value=3.9e-23 Score=174.01 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCCC--ccceEEE--eCCeE--EEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 68 NHTICYTDGSKTPT--TTGCAYS--VGNVV--RSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 68 ~~~~iyTDGS~~~~--g~G~av~--~~~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
..+.||||||+..+ .+|+|++ ..+.. .+..+ ..+|++.||+.|++.||+.+.+ ..++.|+|||+++++.|+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 35899999999864 3677754 33322 22223 3578999999999999999976 479999999999999999
Q ss_pred ccc---------cCC--hhH-HHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCCC
Q psy7230 142 NVR---------FTN--PLI-TKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGTT 196 (306)
Q Consensus 142 ~~~---------~~s--~~~-~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~ 196 (306)
.+. ... +.. .+++..+..+. ....|.|.|||||+|++|||.||+|||+|+..+.
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHH-ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 731 111 111 23333333332 3468999999999999999999999999998764
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.88 E-value=8.9e-23 Score=173.65 Aligned_cols=125 Identities=24% Similarity=0.269 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCC--CccceEE--EeCCe-EEEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHhc
Q psy7230 68 NHTICYTDGSKTP--TTTGCAY--SVGNV-VRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN 142 (306)
Q Consensus 68 ~~~~iyTDGS~~~--~g~G~av--~~~~~-~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~~ 142 (306)
..+.||||||+.. +..|+|+ +.++. .....+...+||++||++|++.||+.+ ...++.|+|||+++++.|..
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHS
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhc
Confidence 3599999999984 3356664 34433 223345667899999999999999998 26899999999999999932
Q ss_pred cccCChhH-HHHHHHH-HHHHhCCCceEEEecCCCCC-----CccchHHHHHHcCcCCCCC
Q psy7230 143 VRFTNPLI-TKVYSTW-NYLKLCKKDITFMWCPSHCG-----IKGNEIVDVAARNPTTGTT 196 (306)
Q Consensus 143 ~~~~s~~~-~~i~~~~-~~l~~~~~~V~~~WVPgH~g-----i~gNE~AD~lAk~A~~~~~ 196 (306)
.....+.. .+.+.++ ..+ ..+..|.|.|||||+| ++|||+||+|||+|+....
T Consensus 99 ~~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 99 HSEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CCCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 22222221 2222222 222 2578999999999999 9999999999999997654
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.88 E-value=5.8e-23 Score=173.52 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=90.6
Q ss_pred CcEEEEEcCCCCCC--ccceEEE--eCCeEE--EEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 68 NHTICYTDGSKTPT--TTGCAYS--VGNVVR--STLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 68 ~~~~iyTDGS~~~~--g~G~av~--~~~~~~--~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
..+.||||||+..+ .+|+|++ .++... ...+ ..+|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 45899999999854 3677754 344321 2223 3578999999999999999865 389999999999999998
Q ss_pred cc---------ccCC--hhH-HHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCC
Q psy7230 142 NV---------RFTN--PLI-TKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTG 194 (306)
Q Consensus 142 ~~---------~~~s--~~~-~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 194 (306)
.+ .... +.. .+++..+..+. ....|.|.|||||+|++|||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAA-QLHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHH-TTSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHH-ccCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 83 1111 111 23333333332 24699999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.87 E-value=4.2e-23 Score=175.79 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCCCCC--ccceEEEe--CCeEEEEc-CCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 67 TNHTICYTDGSKTPT--TTGCAYSV--GNVVRSTL-LNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 67 ~~~~~iyTDGS~~~~--g~G~av~~--~~~~~~~~-l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
...+.||||||+..+ .+|+|++. .+....+. ....+|++.||+.|++.||+.+.+. .+|.|+|||+++++.|.
T Consensus 6 m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 6 RKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred CccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 457899999999864 36788653 22211111 1235789999999999999988663 58999999999999999
Q ss_pred c----------cccCCh--h-HHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCCC
Q psy7230 142 N----------VRFTNP--L-ITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGTT 196 (306)
Q Consensus 142 ~----------~~~~s~--~-~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~ 196 (306)
+ +...++ . -.+++..+..+. ....|.|.|||||+|++|||.||+|||+|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAM-APHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHH-TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHH-hcCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 222222 1 123333333332 2469999999999999999999999999998765
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.85 E-value=3.4e-21 Score=163.77 Aligned_cols=126 Identities=23% Similarity=0.221 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCCC--c-----cceEEEe--CC----eEEEEcC-CCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Q psy7230 67 TNHTICYTDGSKTPT--T-----TGCAYSV--GN----VVRSTLL-NPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTD 132 (306)
Q Consensus 67 ~~~~~iyTDGS~~~~--g-----~G~av~~--~~----~~~~~~l-~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sD 132 (306)
...++||||||+..+ . .|+||+. ++ ....+.. ....+++.||+.|+..||+.+...+ .+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 456899999999854 2 6888653 21 2233333 3567889999999999999887643 57999999
Q ss_pred hHHHHHHHhccc---------c--CChh-HHHHHHHHHHHHhCCCceEEEecCCCCCC------ccchHHHHHHcCcCC
Q psy7230 133 SRSSLAALSNVR---------F--TNPL-ITKVYSTWNYLKLCKKDITFMWCPSHCGI------KGNEIVDVAARNPTT 193 (306)
Q Consensus 133 S~sal~~l~~~~---------~--~s~~-~~~i~~~~~~l~~~~~~V~~~WVPgH~gi------~gNE~AD~lAk~A~~ 193 (306)
|++++++|+.+. . ..|. -.+++..+..+......|.|.|||||+|+ +|||+||+||++|+.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 999999998642 1 1122 12333333332234568999999999995 589999999999874
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.82 E-value=3.9e-20 Score=151.42 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCCCC--ccceEEEe----CCeE-EEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCC----eEEEEeChHHH
Q psy7230 68 NHTICYTDGSKTPT--TTGCAYSV----GNVV-RSTLLNPVNSIFSAELIAIFLCLEAILDSPSG----EFLVVTDSRSS 136 (306)
Q Consensus 68 ~~~~iyTDGS~~~~--g~G~av~~----~~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~----~i~I~sDS~sa 136 (306)
..+.||||||+..+ .+|+|++. +... ........+|++.||+.|++.||+.+.+.+.. ++.|+|||+++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 35899999999864 47777542 2222 11122235799999999999999999887666 99999999999
Q ss_pred HHHHhcccc-CChhHHHHHHHHHHH-HhCCCceEEEecCCCCCCccchHHHHHHcCcCCC
Q psy7230 137 LAALSNVRF-TNPLITKVYSTWNYL-KLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTG 194 (306)
Q Consensus 137 l~~l~~~~~-~s~~~~~i~~~~~~l-~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 194 (306)
++.+++... .++....++..+..+ ......|.|.|||+ ++||.||+|||+|+..
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 999998542 333333444444444 44456999999995 8999999999998753
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.82 E-value=7.2e-20 Score=150.40 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCCC--ccceEEE--eCC---eEEEE-cCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHH
Q psy7230 69 HTICYTDGSKTPT--TTGCAYS--VGN---VVRST-LLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL 140 (306)
Q Consensus 69 ~~~iyTDGS~~~~--g~G~av~--~~~---~~~~~-~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l 140 (306)
.+.||||||+..+ .+|+|++ ..+ ....+ .....+|++.||+.|++.||+++.+.+..++.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 4899999999864 4677754 322 22111 12236899999999999999999988889999999999999999
Q ss_pred hccc-cCChhHHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCC
Q psy7230 141 SNVR-FTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGT 195 (306)
Q Consensus 141 ~~~~-~~s~~~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~ 195 (306)
++.. ..++....++..+..+......|.|.|||+ ++|+.||+|||+|+...
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 9843 334433444444445555678999999996 88999999999998653
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.81 E-value=8.3e-20 Score=182.45 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=89.9
Q ss_pred cCCCcEEEEEcCCCCCCc--cceEEEe-CCeEEEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 65 KYTNHTICYTDGSKTPTT--TGCAYSV-GNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 65 ~~~~~~~iyTDGS~~~~g--~G~av~~-~~~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
+..+.+.||||||+..++ .|+|++. .+......+ ..+||+.||++|++.||+. ...++.|+|||++|+++|+
T Consensus 432 p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~ 506 (555)
T 1mu2_A 432 PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVA 506 (555)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHH
T ss_pred CCCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHh
Confidence 345679999999998653 6777543 222222223 3679999999999999997 5689999999999999999
Q ss_pred ccccCC--hhHHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcC
Q psy7230 142 NVRFTN--PLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPT 192 (306)
Q Consensus 142 ~~~~~s--~~~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~ 192 (306)
++...+ ++..++. +.+. .+..|.|.|||||+|++|||.||+|||+|+
T Consensus 507 ~~~~~~~~~l~~~~~---~~~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 507 SQPTESESKIVNQII---EEMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp TCCSEESCHHHHHHH---HHHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccccccHHHHHHHH---HHhc-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 876432 2233222 2333 368899999999999999999999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.79 E-value=9.7e-20 Score=182.03 Aligned_cols=118 Identities=26% Similarity=0.357 Sum_probs=87.4
Q ss_pred cCCCcEEEEEcCCCCCCc--cceEEEe-CCeEEEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHh
Q psy7230 65 KYTNHTICYTDGSKTPTT--TGCAYSV-GNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALS 141 (306)
Q Consensus 65 ~~~~~~~iyTDGS~~~~g--~G~av~~-~~~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l~ 141 (306)
+..+.+.||||||+..++ .|+|++. .+......+ ..+||++||+.|++.||+.+ ..++.|+|||++|+++|+
T Consensus 435 p~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~ 509 (557)
T 2zd1_A 435 PIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQ 509 (557)
T ss_dssp CCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHT
T ss_pred CCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHh
Confidence 445679999999997542 6777543 332222333 46799999999999999998 579999999999999999
Q ss_pred ccccCC--hhHHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCc
Q psy7230 142 NVRFTN--PLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNP 191 (306)
Q Consensus 142 ~~~~~s--~~~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A 191 (306)
++...+ ++..++. +.+.. ...|.|.|||||+|++|||+||+||++|
T Consensus 510 ~~~~~~~~~l~~~~~---~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 510 AQPDKSESELVNQII---EQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp TCCSEESSHHHHHHH---HHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred cCCccCCHHHHHHHH---HHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 986542 2232222 23333 4689999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.78 E-value=4.9e-19 Score=147.42 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=88.6
Q ss_pred cEEEEEcCCCC-C--Cccce-EEE--eCC-eEEEE--cCC---CCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHH
Q psy7230 69 HTICYTDGSKT-P--TTTGC-AYS--VGN-VVRST--LLN---PVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSS 136 (306)
Q Consensus 69 ~~~iyTDGS~~-~--~g~G~-av~--~~~-~~~~~--~l~---~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sa 136 (306)
.+.||||||+. . +.+|+ |++ ..+ ....+ .++ ..+|++.||+.|++.||+.+.+.+..++.|+|||+++
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV 80 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHH
Confidence 36899999998 3 34664 743 322 22222 222 4789999999999999999998778899999999999
Q ss_pred HHHHhcccc-CChhHHHHHHHHHHHHhCCCceEEEecCCCCCCccchHHHHHHcCcCCCC
Q psy7230 137 LAALSNVRF-TNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGNEIVDVAARNPTTGT 195 (306)
Q Consensus 137 l~~l~~~~~-~s~~~~~i~~~~~~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~ 195 (306)
++.++++.. .++....++..+..+.... .|.|.|||| ++|+.||+|||+|+...
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999998743 2333333443333332222 599999999 58999999999998654
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.38 E-value=1.2e-13 Score=114.23 Aligned_cols=121 Identities=10% Similarity=-0.027 Sum_probs=82.4
Q ss_pred cCCCcEEEEEcCCCCCC--ccceEEEeC--CeEEEEc-CCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHH
Q psy7230 65 KYTNHTICYTDGSKTPT--TTGCAYSVG--NVVRSTL-LNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAA 139 (306)
Q Consensus 65 ~~~~~~~iyTDGS~~~~--g~G~av~~~--~~~~~~~-l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~ 139 (306)
+....+.||||||+..+ .+|+|++.. +...... -...+||+.||++|++.||+.+.+.+. ++.|+|||++|++.
T Consensus 7 ~~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 7 EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp -CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHH
T ss_pred CCCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHH
Confidence 44567899999999854 378886542 2221111 122579999999999999999998666 99999999999999
Q ss_pred HhccccC----Chh-HHHHHHHHHHHH--hCCCceEEEecCCCCCCccchHHHH
Q psy7230 140 LSNVRFT----NPL-ITKVYSTWNYLK--LCKKDITFMWCPSHCGIKGNEIVDV 186 (306)
Q Consensus 140 l~~~~~~----s~~-~~~i~~~~~~l~--~~~~~V~~~WVPgH~gi~gNE~AD~ 186 (306)
+++...+ .+. -.++.+.++.+. .....+....|+.|++.-||..||.
T Consensus 86 ~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 86 VKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCcccc
Confidence 9887521 111 222332222211 1235566677888998889999884
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.11 E-value=5.4e-11 Score=97.06 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCCCCC--ccceE-EEeC-C-eE-EEEcCCCCCcHHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHH
Q psy7230 67 TNHTICYTDGSKTPT--TTGCA-YSVG-N-VV-RSTLLNPVNSIFSAELIAIFLCLEAILDSPSGEFLVVTDSRSSLAAL 140 (306)
Q Consensus 67 ~~~~~iyTDGS~~~~--g~G~a-v~~~-~-~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~sal~~l 140 (306)
.....||||||+..+ ..|+| |+.. + .. ....+ ..+||++||++|++.||+.+.+.+.. +.|+|||++|++.|
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 345689999999865 36774 4432 2 22 22223 36899999999999999999885544 89999999999999
Q ss_pred hccc
Q psy7230 141 SNVR 144 (306)
Q Consensus 141 ~~~~ 144 (306)
.++.
T Consensus 81 ~~~~ 84 (134)
T 4htu_A 81 KDKK 84 (134)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8753
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=84.37 E-value=0.16 Score=48.62 Aligned_cols=74 Identities=11% Similarity=-0.049 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCCCccceEEEeC--C--e-E--EEEcC---CCCCcHHHHHHHHHHHHHHHHHh-CCCCeEEEEeChHH
Q psy7230 67 TNHTICYTDGSKTPTTTGCAYSVG--N--V-V--RSTLL---NPVNSIFSAELIAIFLCLEAILD-SPSGEFLVVTDSRS 135 (306)
Q Consensus 67 ~~~~~iyTDGS~~~~g~G~av~~~--~--~-~--~~~~l---~~~~s~~~AEl~AI~~AL~~~~~-~~~~~i~I~sDS~s 135 (306)
...+.+|||+|. .++|+..... + . . .+-.+ ...-+++..|++||..|++.+.. .....++|+||+.
T Consensus 344 ~~~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 344 TKPFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CCTTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CCcEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 445789999984 3444322221 1 1 1 11122 23456788999999999998876 3567999999996
Q ss_pred HHHHHhcc
Q psy7230 136 SLAALSNV 143 (306)
Q Consensus 136 al~~l~~~ 143 (306)
++..+.+.
T Consensus 421 ~~~~l~~~ 428 (455)
T 1rw3_A 421 VEALVKQP 428 (455)
T ss_dssp TTTTSSST
T ss_pred HHHHhCCC
Confidence 66555543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=64.08 E-value=22 Score=33.44 Aligned_cols=85 Identities=2% Similarity=-0.207 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHh---h-------cCCCcEEEEEcCCCCCCccceEEEeCC-e---EEEEcCCCCCcHHHHHHHH-HHHHH
Q psy7230 52 VVFQSLFRDVIN---S-------KYTNHTICYTDGSKTPTTTGCAYSVGN-V---VRSTLLNPVNSIFSAELIA-IFLCL 116 (306)
Q Consensus 52 ~~~~~~f~~~~~---~-------~~~~~~~iyTDGS~~~~g~G~av~~~~-~---~~~~~l~~~~s~~~AEl~A-I~~AL 116 (306)
.+..+.|.++.. + .....+.++||+|.. +..|+....++ . ...+.-......+.-|++| |..||
T Consensus 297 ~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al 375 (428)
T 2zd1_B 297 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKI 375 (428)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHh
Confidence 355666766542 1 335568999999942 12232223322 1 1223322233445566667 99999
Q ss_pred HHHHh----CCCCeEEEEeChHHHH
Q psy7230 117 EAILD----SPSGEFLVVTDSRSSL 137 (306)
Q Consensus 117 ~~~~~----~~~~~i~I~sDS~sal 137 (306)
+.... .....++++||.+...
T Consensus 376 ~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 376 TTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp HHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred hccceEEECCCCcEECCccHHHHHH
Confidence 87654 2345678889998644
No 19
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=37.51 E-value=30 Score=28.65 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=31.3
Q ss_pred CccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 81 TTTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 81 ~g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
..+|+.++..+.....+... ......||..||..|.+.+........++|+
T Consensus 36 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 36 IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 35788877655443222111 1113579999999998876544455677776
No 20
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=32.82 E-value=40 Score=27.49 Aligned_cols=51 Identities=14% Similarity=0.052 Sum_probs=30.9
Q ss_pred CccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 81 TTTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 81 ~g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
..+|+.++..+.....+... ..-.-.||..||..|.+.+........++|+
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 35788877655443222211 1123569999999998866444455677776
No 21
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=30.63 E-value=58 Score=26.16 Aligned_cols=50 Identities=16% Similarity=0.007 Sum_probs=30.3
Q ss_pred ccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 82 TTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 82 g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
.+|++++..+......... ..-...||..||..|............++|+
T Consensus 28 pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 28 PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 5777777654433222111 1123579999999998876544456677776
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=30.31 E-value=38 Score=26.70 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=28.7
Q ss_pred ccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 82 TTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 82 g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
.+|++++..+......... ......||..||..|.+..........++|+
T Consensus 25 ~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 25 PIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 4777777654433222111 1113569999999998865443344556665
No 23
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=30.08 E-value=47 Score=27.23 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=30.5
Q ss_pred CccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 81 TTTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 81 ~g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
..+|++++..+.....+... ......||..||..|.+..........++|+
T Consensus 43 ~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 43 VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 35788877655433222111 1113469999999998875444455677776
No 24
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=28.00 E-value=2.3e+02 Score=27.26 Aligned_cols=90 Identities=2% Similarity=-0.195 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhh----------cCCCcEEEEEcCCCCCCccceEEEeCC-e---EEEEcCCCCCcHHHHHHHH-HHHHH
Q psy7230 52 VVFQSLFRDVINS----------KYTNHTICYTDGSKTPTTTGCAYSVGN-V---VRSTLLNPVNSIFSAELIA-IFLCL 116 (306)
Q Consensus 52 ~~~~~~f~~~~~~----------~~~~~~~iyTDGS~~~~g~G~av~~~~-~---~~~~~l~~~~s~~~AEl~A-I~~AL 116 (306)
.+..+.|.++... .+...+.+|||+|.. +.+|+....++ . ...+.-......+.-|++| +..||
T Consensus 299 ~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~-g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l 377 (557)
T 2zd1_A 299 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKI 377 (557)
T ss_dssp HHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEET-TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCC-CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHh
Confidence 3456677666431 334568999999953 12344333322 1 2233333344556678888 88888
Q ss_pred HHHHhC---CCCeEEE-EeChHHHHHHHhc
Q psy7230 117 EAILDS---PSGEFLV-VTDSRSSLAALSN 142 (306)
Q Consensus 117 ~~~~~~---~~~~i~I-~sDS~sal~~l~~ 142 (306)
+..... ....+.| ++|++.+......
T Consensus 378 ~~~~~~l~g~~p~~~vp~~~~~~~~~~~~~ 407 (557)
T 2zd1_A 378 TTESIVIWGKTPKFKLPIQKETWETWWTEY 407 (557)
T ss_dssp HHHHHHHHSSCCEEEESBCHHHHHHHHHHC
T ss_pred hhhheEEeCCCCCEECCCcHHHHHHHhhhc
Confidence 775431 1225666 7888855544443
No 25
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=27.18 E-value=50 Score=26.91 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=29.1
Q ss_pred ccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy7230 82 TTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAILDSPSGEFLVVT 131 (306)
Q Consensus 82 g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~s 131 (306)
.+|++++..+.....+... ......||..||..|.+..........++|+
T Consensus 30 pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 5788877655443222111 1123569999999998876443344556665
No 26
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=21.43 E-value=85 Score=26.10 Aligned_cols=40 Identities=28% Similarity=0.225 Sum_probs=25.1
Q ss_pred CccceEEEeCCeEEEEcCCC----CCcHHHHHHHHHHHHHHHHH
Q psy7230 81 TTTGCAYSVGNVVRSTLLNP----VNSIFSAELIAIFLCLEAIL 120 (306)
Q Consensus 81 ~g~G~av~~~~~~~~~~l~~----~~s~~~AEl~AI~~AL~~~~ 120 (306)
..+|+.++..+......... ..-...||..||..|.+.+.
T Consensus 46 ~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 46 VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 35888877765543332211 22345799999999987654
Done!