RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7230
(306 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 45/282 (15%), Positives = 80/282 (28%), Gaps = 90/282 (31%)
Query: 84 GCAYSV--GNVVRS--TLLNPVNSIF---------SAELIAIF--LC------LEAILDS 122
G + +V S IF ++ + L + D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 123 PSGEFLVVTDSRSSLAAL-SNVRFTNPLIT--KVYS--TWNYLKL-CK-------KDITF 169
S L + ++ L L + + N L+ V + WN L CK K +T
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 170 MWCPSHCGIKGNEIVDVAARNPTTGTTPSKL---------CTPEDFK-------PFVASI 213
+ ++ + + TP ++ C P+D P SI
Sbjct: 280 F-------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 214 ---MQSEWQSLWDNIP--NTNKLKN-IRPSIKAWKTSDQDKRFQELAGNRRERPYHKSVK 267
+ + WDN N +KL I S+ + ++ K F L+ + S
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAH 386
Query: 268 APNS---------------------KKRASIASNRKKARYRI 288
P K + + K++ I
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 41.4 bits (96), Expect = 3e-04
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 44/120 (36%)
Query: 1 MDQQRKVLLDFPNPTQTSVIAPYVRFI--------PPWSNSSPPVDLSLCDGKK-----C 47
M R V LDF RF+ W+ S ++ L K C
Sbjct: 490 MTLFRMVFLDF-------------RFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYIC 535
Query: 48 DSAPVVFQSLFRDVIN--SKYTNHTICYTDGSKTPTTTGCAYSVGNVVRSTLLNPVNSIF 105
D+ P ++ L +++ K + IC T +++R L+ +IF
Sbjct: 536 DNDPK-YERLVNAILDFLPKIEENLICS------KYT--------DLLRIALMAEDEAIF 580
Score = 31.7 bits (71), Expect = 0.30
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 158 NYLKLCKKDITFMWCPS-----HC--------GIKGNEIVD--VAARNPTTGTTP--SKL 200
+ KDI ++ + C I E +D + +++ +GT L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 201 CT-PED-FKPFVASIMQSEWQSLWDNIPNTNKLKNIRPSIKAWKTSDQDKRFQELAGNRR 258
+ E+ + FV +++ ++ L I K + +PS+ +Q R N+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPI----KTEQRQPSMMTRMYIEQRDRLYN--DNQV 125
Query: 259 ERPYHKSVKAPNSKKRASIASNRKKARYRILC 290
Y+ S P K R ++ + A+ ++
Sbjct: 126 FAKYNVSRLQPYLKLRQAL-LELRPAKNVLID 156
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 73 YTDGSKTPTTTGCAYSV-----------GNVVRSTLLNPVNSIFSAELIAIFLCLEAILD 121
YTDGS AY+ N + E+ A ++
Sbjct: 10 YTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRN--VAGEIAAALYAVKKASQ 67
Query: 122 SPSGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKDITFMWCPSHCGIKGN 181
+ ++ D + T+ Y + + +F +H G + N
Sbjct: 68 LGV-KIRILHDYAGIAFWATGEWKAKNEFTQAY--AKLMNQYRGIYSFEKVKAHSGNEFN 124
Query: 182 EIVDVAAR 189
+ VD+ A+
Sbjct: 125 DYVDMKAK 132
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 50.6 bits (121), Expect = 5e-08
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 69 HTICYTDGS--KTPTTTGCAYSVG---NVVRSTLLNPVNSIFSAELIAIFLCLEAILDSP 123
+T YTDGS +V V+ + L S AELIA+ +A+ +
Sbjct: 24 YTW-YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIAL---TQALKMAE 79
Query: 124 SGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLC--KKDITFMWCPSHCG---- 177
+ V TDSR + A +V I LK K ++ + CP H
Sbjct: 80 GKKLNVYTDSRYAFATA-HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSA 138
Query: 178 -IKGNEIVDVAAR 189
+GN + D AAR
Sbjct: 139 EARGNRMADQAAR 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 9e-07
Identities = 63/426 (14%), Positives = 111/426 (26%), Gaps = 180/426 (42%)
Query: 2 DQQRKVLLDF----PNPT--------QTSVI---APYVRFIPPWSNSSPPVDLSLCDGKK 46
Q ++ F P PT T+ ++ ++ SL + K
Sbjct: 31 SQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS-----------SLVEPSK 76
Query: 47 CDSAPVVFQSLFRDVINSKY--TN--HTICYTDGSKTPTTTG-------CAYSVGNVVRS 95
V + + Y N H + + TT + + +
Sbjct: 77 VGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 96 TLLNPVNSIF-------SAELIAIF------------L---------CLEAILDS----- 122
NS +A+L+AIF L + ++
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 123 --------------PSG----EFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCK 164
G E+L + L ++ + PLI V +Y+ K
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAHYVVTAK 254
Query: 165 KDITFMWCPSHCGIKGNEIVDVAARNPTTGTTPSKLCTPEDFKPFVASI---MQSEWQSL 221
G E+ R+ G T + + V ++ W+S
Sbjct: 255 L----------LGFTPGEL-----RSYLKGAT---GHS----QGLVTAVAIAETDSWESF 292
Query: 222 WDNI------------------PNTNKLKNIRPSIKAWKTSDQDKRFQE------LA--G 255
+ ++ PNT ++ PSI + E L+
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNT----SLPPSI-----LEDSLENNEGVPSPMLSISN 343
Query: 256 NRRERPYHKSVKAPNSK----KRASIA-SNRKKARYRILCSP-SFV-SGTPPTD------ 302
+E+ V NS K+ I+ N + V SG PP
Sbjct: 344 LTQEQ-VQDYVNKTNSHLPAGKQVEISLVN----------GAKNLVVSG-PPQSLYGLNL 391
Query: 303 --REIK 306
R+ K
Sbjct: 392 TLRKAK 397
Score = 45.4 bits (107), Expect = 2e-05
Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 105/290 (36%)
Query: 1 MDQQRKVLLDFP-------NPTQTSVIAPYVRFIPPWS-----NSSPPVDLSLCDGKKCD 48
D K F NP + F N S + ++ DGK
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNL-----TIHFGGEKGKRIRENYSAMIFETIVDGK--- 1700
Query: 49 SAPVVFQSLFRDVINSKYTNHTICYTDGSKTPTTTGCAYSVGNVVRSTLLN------PVN 102
+ + +F++ IN T++T G LL+ P
Sbjct: 1701 ---LKTEKIFKE-INEHSTSYTFRSEKG--------------------LLSATQFTQP-- 1734
Query: 103 SIFSAELIAIFLCLEA--ILDSPS-------GEFLVVTDSRSSLAALSNVRFTNPLITKV 153
++ E A F L++ ++ + + GE+ ++LA+L++ V
Sbjct: 1735 ALTLME-KAAFEDLKSKGLIPADATFAGHSLGEY-------AALASLAD----------V 1776
Query: 154 YSTWNYLKLCKK--DITFMWCPSHCGIKGNEIVDVAARNPTTGTTPSKLCTPEDFKPFVA 211
S + +++ + P G + A NP + + E + V
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPR--DELGRSNYGMIAINP---GRVAASFSQEALQYVVE 1831
Query: 212 SIMQSEWQSLW---DNIPN---------------TNKLKNIR-PSIKAWK 242
+ + + N+ N TN L I+ I +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Score = 37.0 bits (85), Expect = 0.008
Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 88/240 (36%)
Query: 74 TDGS-----KTPTTTGCAYSVGNVVR----STLLNPVNSIFS-------AELIAIFL--C 115
+ GS PT + + + + ++ L P + AEL+ FL
Sbjct: 12 SHGSLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 116 LEAILDSPSGEFLVVTDSRSSLAALSNVRFTNPLITKVYSTWNYLKLCKKDI-----TFM 170
+ S G+F V L F N YL+ DI +
Sbjct: 69 SSLVEPSKVGQFDQV------LNLCLT-EFEN----------CYLE--GNDIHALAAKLL 109
Query: 171 WCPSHCGIKGNEIV------DVAARNPTTGTTPSKLC------------------TPEDF 206
+K E++ + A+ P + S L +D+
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 207 -----------KPFVASIMQSEWQSLWDNIPNTNKLKNIRP---SIKAW-----KTSDQD 247
V +++ ++L + I T + + +I W T D+D
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 34.6 bits (79), Expect = 0.038
Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 73/195 (37%)
Query: 72 CYTDGSKTPTTTGCAYSVGNVVRSTL---LNPVN-SIFSAELIAIFLCLEAILDSPSGEF 127
+ P+ S+ N+ + + +N N + + + + I ++++
Sbjct: 327 SLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-----SLVNGAKN-- 376
Query: 128 LVVTDSRSSLAAL---------------SNVRFTN--PLITKVY--------STWNYLK- 161
LVV+ SL L S + F+ + + S + L
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS--HLLVP 434
Query: 162 ---LCKKDI---TFMWCPSHCGI--------------KGN---EIVDVAARNP-----TT 193
L KD+ + I G+ IVD R P TT
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 194 GTTPSKLCTPEDFKP 208
+ + DF P
Sbjct: 495 QFKATHIL---DFGP 506
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 44.0 bits (104), Expect = 3e-05
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLCK 164
EL AI+L L+ DS E +VTDS+ +L + + + L+ ++ +L K
Sbjct: 479 TELQAIYLALQ---DSGL-EVNIVTDSQYALGIIQAQPDKSESELVNQIIE-----QLIK 529
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GNE VD
Sbjct: 530 KEKVYLAWVPAHKGIGGNEQVD 551
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 42.4 bits (100), Expect = 1e-04
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 107 AELIAIFLCLEAILDSPSGEFLVVTDSRSSLAALSN--VRFTNPLITKVYSTWNYLKLCK 164
AEL A + L DS + ++ DS+ + +++ + ++ ++ ++ K
Sbjct: 476 AELEAFAMALT---DSGP-KVNIIVDSQYVMGIVASQPTESESKIVNQIIE-----EMIK 526
Query: 165 KDITFM-WCPSHCGIKGNEIVD 185
K+ ++ W P+H GI GN+ VD
Sbjct: 527 KEAIYVAWVPAHKGIGGNQEVD 548
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 37.9 bits (89), Expect = 0.001
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 157 WNYL-KLCKK-DITFMWCPSHCGIKGNEIVDVAARN 190
+ L +L + DI +M P H G GNE D AR
Sbjct: 112 FVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 147
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 36.0 bits (84), Expect = 0.004
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 161 KLCKK-DITFMWCPSHCGIKGNEIVDVAARN 190
+L KK + W P+H GI GNE VD
Sbjct: 113 QLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.005
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 237 SIKAWKTSDQDKRFQELAGNRRERPYHKSVKAP----------NSKKRASIASNRKKA 284
SI+ W+ +Q KR QEL + KA + + + +NR
Sbjct: 86 SIRKWRE-EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 32.1 bits (74), Expect = 0.12
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 160 LKLCKK-DITFMWCPSHCGIKGNEIVDVAARN 190
+ I + W H G NE D AR
Sbjct: 108 DAALGQHQIKWEWVKGHAGHPENERADELARA 139
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 31.7 bits (73), Expect = 0.14
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 160 LKLCKK-DITFMWCPSHCGIKGNEIVDVAAR 189
LKL +TF H N D AR
Sbjct: 109 LKLTTLHRVTFHKVKGHSDNPYNSRADELAR 139
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 31.3 bits (72), Expect = 0.22
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 160 LKLCKK-DITFMWCPSHCGIKGNEIVDVAARN 190
K + I + W H G NE D AR
Sbjct: 110 DKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 31.0 bits (71), Expect = 0.24
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 160 LKLCKK-DITFMWCPSHCGIKGNEIVDVAAR 189
L + F + H G NE VD AR
Sbjct: 113 LLAMAPHRVRFHFVKGHTGHPENERVDREAR 143
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 28.2 bits (63), Expect = 3.4
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 9/44 (20%)
Query: 248 KRFQELAGNRRERPYHKSVKAPNSKKRASIASNRKKARYR-ILC 290
R L + A N + K R+R I C
Sbjct: 37 SRLTTL--------RNTLAPATNDPRYLQACGGEKLNRFRDIQC 72
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 27.7 bits (61), Expect = 4.7
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 14 PTQTSVIAPYVRFIPPWSNSSPPVDLSLCD 43
+ S+ + F PP P + C+
Sbjct: 10 MGRGSMSRDPLPFFPPLYLGGPEITTENCE 39
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 27.3 bits (61), Expect = 7.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 247 DKRFQELAGNRRERPYHKSVKAPNSKKRASIAS---NRKKARYR-ILC 290
++ F+EL RR +P + ++ + +A NR + RYR +
Sbjct: 6 EREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSP 53
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
TLA SRT MES; 1.9A {Bacillus firmus}
Length = 358
Score = 27.1 bits (59), Expect = 8.3
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Query: 214 MQSEWQSLWDNIPN----TNKLKNIRPSIKAWKTS-DQDKRFQELAGNRRERPYHKSVKA 268
M W + + N + + N + W D+ L R A
Sbjct: 149 MGFSWNDMISEMLNQNWHIHNMTNATDASPGWNLLYDERTTNLTLDETERVTLIVTLGHA 208
Query: 269 PNSKKRASIASNRKKARYRILCSPSFVSGTPP 300
++ +A+ + + S PP
Sbjct: 209 DTARIQAAPGTTAGQGTQYFWLSKDSYDFFPP 240
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein,
endotoxin, lipid binding protein; NMR {Penaeus monodon}
Length = 102
Score = 25.9 bits (56), Expect = 9.0
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 170 MWCPSHCGIKGN-------EIVDVAARNPTTGTTPSKLCTPEDFKPFVAS 212
MWCP I+G + A++ L + ++ +++S
Sbjct: 53 MWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQEANQWLSS 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.406
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,548,459
Number of extensions: 252435
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 27
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)