BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7232
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 66 GNENKVTAVTKMNAQSSRSHTICTIYFGA------------VAKLHLVDLAGSEQLFSLS 113
GN+N+ T MN SSRSH I I V KL+LVDLAGSE+
Sbjct: 210 GNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTG 269
Query: 114 DNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAV 173
EA KINLSL L V+ AL + HIPYR+S LT +L+DSLGGN T M+A
Sbjct: 270 AQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVAN 329
Query: 174 VSMDRYNQHQTLATLKFAQRTLRVSN 199
V YN +TL TL++A R + N
Sbjct: 330 VGPASYNVEETLTTLRYANRAKNIKN 355
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 49 TVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLH 99
T + + S ++I G N+ AVT MN SSRSH++ I KL+
Sbjct: 176 TERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLY 235
Query: 100 LVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILK 159
LVDLAGSE++ + +EA+ IN SL L V+ AL + N+ HIPYR+S LT IL+
Sbjct: 236 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQ 295
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYL 201
+SLGGN T+++ S +N+ +T +TL F +R V N +
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVV 337
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 89/166 (53%), Gaps = 21/166 (12%)
Query: 50 VKKLD--SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------- 94
VK++D L+ + L+ GN + T T +N SSRSHT+ T+
Sbjct: 178 VKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAP 237
Query: 95 ----VAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRH--HIP 148
V+K H VDLAGSE++ LR E+ +IN SL L V+ AL +P R +IP
Sbjct: 238 GQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIP 297
Query: 149 YRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRT 194
YR+S +T ILKDSLGGN T MIA VS + +TL TL +A R
Sbjct: 298 YRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRA 343
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 59 AVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA-----------VAKLHLVDLAGSE 107
A L+ G N++ A MN SSRSH I TIY A +K++LVDLAGSE
Sbjct: 210 AFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSE 269
Query: 108 QLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGI 167
+L + EA IN SL +LEQ +IAL + R HIP+R LT LKDSLGGN
Sbjct: 270 RLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329
Query: 168 TSMIAVVSMDRYNQHQTLATLKFAQR 193
++ + + +TL++L+FA R
Sbjct: 330 MVLVTNIYGEAAQLEETLSSLRFASR 355
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 53 LDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLHLVDL 103
+ S+ +++ G + A T MN +SSRSH+I I +L LVDL
Sbjct: 177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDL 236
Query: 104 AGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLG 163
AGSE++ + EA+KIN SL L V+ AL + H+PYR+S LT IL++SLG
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLG 296
Query: 164 GNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
GN T++I S YN +TL+TL+F R + N + N
Sbjct: 297 GNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 50 VKKLD--SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------- 94
VK++D L+ + L+ GN + T T +N SSRSHT+ T+
Sbjct: 178 VKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAP 237
Query: 95 ----VAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRH--HIP 148
V+K H VDLAGSE++ E+ +IN SL L V+ AL +P R HIP
Sbjct: 238 GQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIP 297
Query: 149 YRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRT 194
YR+S +T ILKDSLGGN T MIA VS + +TL TL +A R
Sbjct: 298 YRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRA 343
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLHLVDLAG 105
S + + I G N+ AVT MN SSRSH+I I KL+LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 106 SEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGN 165
SE++ + +EA+ IN SL L V+ AL E + + +PYR+S +T IL+DSLGGN
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTY-VPYRDSKMTRILQDSLGGN 293
Query: 166 GITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
T+++ S YN+ +T +TL F QR + N
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLHLVDLAG 105
S + + I G N+ AVT MN SSRSH+I I KL+LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 106 SEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGN 165
SE++ + +EA+ IN SL L V+ AL E + + +PYR+S +T IL+DSLGGN
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTY-VPYRDSKMTRILQDSLGGN 293
Query: 166 GITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
T+++ S YN+ +T +TL F QR + N
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLHLVDLAG 105
S + + I G N+ AVT MN SSRSH+I I KL+LVDLAG
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 106 SEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGN 165
SE++ + +EA+ IN SL L V+ AL E + + +PYR+S +T IL+DSLGGN
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTY-VPYRDSKMTRILQDSLGGN 293
Query: 166 GITSMIAVVSMDRYNQHQTLATLKFAQR 193
T+++ S YN+ +T +TL F QR
Sbjct: 294 CRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 168 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 217
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 218 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 277
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 170 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 219
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 220 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 279
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 280 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG------------AVAKLHLVD 102
S + +L+ G E + TA T MNAQSSRSHT+ +I + KL+LVD
Sbjct: 207 SKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVD 266
Query: 103 LAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS 161
LAGSE + + +R E IN SL L +V+ AL + H+PYR S LT +L++S
Sbjct: 267 LAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRESKLTRLLQES 325
Query: 162 LGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
LGG TS+IA +S + +TL+TL++A R + N + N
Sbjct: 326 LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 159 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 208
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 209 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 268
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 269 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 167 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 216
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 217 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 276
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 277 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 168 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 217
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 218 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 277
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 168 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 217
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 218 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 277
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 168 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 217
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 218 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 277
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 168 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 217
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 218 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 277
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S N +TL+TL++A R + N + N
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 104/205 (50%), Gaps = 32/205 (15%)
Query: 16 IFNL--PQSD--QRAQGSPDPQTGPASPGNGRSGASLTVKKLDSL-----NSAVQLIVTG 66
+F+L P SD +R Q DP R+ + +K L+ + + Q++ G
Sbjct: 153 LFDLLNPSSDVSERLQMFDDP----------RNKRGVIIKGLEEITVHNKDEVYQILEKG 202
Query: 67 NENKVTAVTKMNAQSSRSHTI--CTIYFGA----------VAKLHLVDLAGSEQLFSLSD 114
+ TA T MNA SSRSH++ TI+ + KL+LVDLAGSE +
Sbjct: 203 AAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGA 262
Query: 115 NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
EA IN SL L +V+ AL E H+PYR S LT IL+DSLGG TS+IA +
Sbjct: 263 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSN 199
S N +TL+TL++A R + N
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILN 346
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------V 95
LT+ + S + L+ GN+N+ T MNA SSRSH + IY +
Sbjct: 192 LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRI 251
Query: 96 AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR--HHIPYRNST 153
AK+ L+DLAGSE+ + E IN SL L V+ AL + R HIPYRNS
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 154 LTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
LT +LKDSLGGN T MIA VS T TLK+A R
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 32/187 (17%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG-------------AVAKLHLV 101
S N L+ +GN+ + A T MN SSRSH + I F V+K+ LV
Sbjct: 188 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLV 247
Query: 102 DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR-----------HHIPYR 150
DLAGSE+ S E IN SL L +V+ AL E + IPYR
Sbjct: 248 DLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
Query: 151 NSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGNFVQEQD 210
+S LT +L+++LGGN T+M+A +S N +TL+TL++A R ++ N + N
Sbjct: 308 DSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN------ 361
Query: 211 SYHYYHH 217
H++HH
Sbjct: 362 --HHHHH 366
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 32/187 (17%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG-------------AVAKLHLV 101
S N L+ +GN+ + A T MN SSRSH + I F V+K+ LV
Sbjct: 188 SYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLV 247
Query: 102 DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR-----------HHIPYR 150
DLAGSE+ S E IN SL L +V+ AL E + IPYR
Sbjct: 248 DLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
Query: 151 NSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGNFVQEQD 210
+S LT +L+++LGGN T+M+A +S N +TL+TL++A R ++ N + N
Sbjct: 308 DSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN------ 361
Query: 211 SYHYYHH 217
H++HH
Sbjct: 362 --HHHHH 366
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 99/213 (46%), Gaps = 41/213 (19%)
Query: 38 SPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAV-- 95
SP G LT + L ++ + G+ ++ A TKMN SSRSH + TI +
Sbjct: 222 SPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHH 281
Query: 96 -----------AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR 144
+++ LVDLAGSE+ S E IN SL L +V+ AL +P
Sbjct: 282 DLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341
Query: 145 HH---------------------IPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQ 183
+PYR+S LT +LKDSLGGN T+MIA +S Y+ +
Sbjct: 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYD--E 399
Query: 184 TLATLKFAQ-----RTLRVSNYLQGNFVQEQDS 211
TL+TL++A RT V N + G E+D+
Sbjct: 400 TLSTLRYADQAKRIRTRAVVNQVDGVSAAERDA 432
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 12 LKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKV 71
L++ + PQ + PD PG V+ +D +N + G+ N+
Sbjct: 142 LRDLLGKEPQEKLEIRLCPDGSGQLYVPGL----TEFQVQSVDDINKVFEF---GHTNRT 194
Query: 72 TAVTKMNAQSSRSHTI---------CTIYFGAVAKLHLVDLAGSEQLF-SLSDNYLLRNE 121
T T +N SSRSH + C+ KL+LVDLAGSE++ S ++ LR E
Sbjct: 195 TEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLR-E 253
Query: 122 ARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQ 181
A+ IN SL L V+ AL + H+P+RNS LT +L+DSL G+ T M+ VS N
Sbjct: 254 AQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312
Query: 182 HQTLATLKFAQRTLRV 197
+TL +LKFA+R V
Sbjct: 313 SETLYSLKFAERVRSV 328
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG-------------AVAKLHLV 101
S N L+ +GN+ + A T MN SSRSH + I F V+K+ LV
Sbjct: 204 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLV 263
Query: 102 DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR-----------HHIPYR 150
DLAGSE+ S E IN SL L +V+ AL E + IPYR
Sbjct: 264 DLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 323
Query: 151 NSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGNF 205
+S LT +L+++LGGN T+M+A +S N +TL+TL++A R ++ N + N
Sbjct: 324 DSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNL 378
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 24/174 (13%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG-------------AVAKLHLV 101
S N L+ +GN+ + A T MN SSRSH + I F V+K+ LV
Sbjct: 188 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLV 247
Query: 102 DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR-----------HHIPYR 150
DLAGSE+ S E IN SL L +V+ AL E + IPYR
Sbjct: 248 DLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
Query: 151 NSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
+S LT +L+++LGGN T+M+A +S N +TL+TL++A R ++ N + N
Sbjct: 308 DSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA-----------VAKLHLVDLAGSEQLF 110
L+ G N+ A T+MN SSRSH+I + V KL+LVDLAGSE+
Sbjct: 190 LMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQS 249
Query: 111 SLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSM 170
E KINLSL L V+ L E HIPYR+S LT +L+DSLGGN T M
Sbjct: 250 KTGATGETLVEGAKINLSLSALGLVISKLVE-GATHIPYRDSKLTRLLQDSLGGNSKTLM 308
Query: 171 IAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
A +S N +T++TL++A R ++ N
Sbjct: 309 CANISPASTNYDETMSTLRYADRAKQIKN 337
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 18/150 (12%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG-------------AVAKLHLVDLAGSEQ 108
L+ GN+++ A T MN +SSRSH + I V KL LVDLAGSE+
Sbjct: 197 LMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSER 256
Query: 109 LFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN-----RHHIPYRNSTLTSILKDSLG 163
E IN SL L V+ AL + + +PYR+S LT +LKDSLG
Sbjct: 257 ATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLG 316
Query: 164 GNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
GN T+M+A VS N +TL+TL++A R
Sbjct: 317 GNSKTAMVATVSPAADNYDETLSTLRYADR 346
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 78/170 (45%), Gaps = 36/170 (21%)
Query: 66 GNENKVTAVTKMNAQSSRSHTICTIYFGA------------VAKLHLVDLAGSEQLFSLS 113
GN+ + T MN SSRSH I I V KL+LVDLAGSE+
Sbjct: 210 GNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAG 269
Query: 114 DNYL------------------------LRNEARKINLSLHYLEQVMIALDEPNRHHIPY 149
N EA KINLSL L V+ AL HIPY
Sbjct: 270 PNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPY 329
Query: 150 RNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
R+S LT +L+DSLGGN T M+A + ++ ++L+TL+FA R + N
Sbjct: 330 RDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKN 379
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKL 98
+TV + + +I G+E + T T MN QSSRSH I ++ A KL
Sbjct: 170 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKL 229
Query: 99 HLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSIL 158
VDLAGSE++ EA+ IN SL L V+ AL N HIPYRN LT ++
Sbjct: 230 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLM 288
Query: 159 KDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
DSLGGN T M +S N +T +L +A R + N
Sbjct: 289 SDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVN 329
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVAKLH----LVDL 103
L +++ + ++LI GN + + T NA SSRSH + I KLH L+DL
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLIDL 325
Query: 104 AGSEQLFSLSD-NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS- 161
AG+E+ S + R E +IN SL L++ + AL N+ H P+R S LT +L+DS
Sbjct: 326 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR-NKPHTPFRASKLTQVLRDSF 384
Query: 162 LGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+G N T MIA +S + TL TL++A R
Sbjct: 385 IGENSRTCMIATISPGMASCENTLNTLRYANR 416
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 9/150 (6%)
Query: 53 LDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLHLVDL 103
+ S A+ ++ N+ + TA TK N SSRSH+I I + L+L+DL
Sbjct: 558 IKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDL 617
Query: 104 AGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLG 163
AGSE+L + E + IN SL L V+ +L+ + H+PYRNS LT +LK SLG
Sbjct: 618 AGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLG 677
Query: 164 GNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
GN T M +S + ++T+ +L+FA +
Sbjct: 678 GNSKTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKL 98
+T + +L ++ G+E + + T MN +SSRSH I ++ A KL
Sbjct: 178 VTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKL 237
Query: 99 HLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSIL 158
VDLAGSE++ EA+ IN SL L V+ AL N HIPYRN LT ++
Sbjct: 238 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLTMLM 296
Query: 159 KDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
DSLGGN T M VS N +T +L +A R + N
Sbjct: 297 SDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI----------YFGAVAK 97
L+ K + S + + + N+ T++N +SSRSH + + + K
Sbjct: 189 LSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGK 248
Query: 98 LHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSI 157
L+L+DLAGSE + L E+ IN SL L +V+ AL++ +PYR+S LT +
Sbjct: 249 LYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ-GLPRVPYRDSKLTRL 307
Query: 158 LKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
L+DSLGG+ + +IA ++ +R T++ L FA R+ V N
Sbjct: 308 LQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVIN 349
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 53 LDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVAKLH----LVDLAGSEQ 108
++S + +++I G+ + + T N+ SSRSH I A ++H LVDLAG+E+
Sbjct: 233 VNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNER 292
Query: 109 LFSLSD-NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-LGGNG 166
S + R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +G N
Sbjct: 293 GADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENS 351
Query: 167 ITSMIAVVSMDRYNQHQTLATLKFAQRTLRVS 198
T MIA +S + TL TL++A R +S
Sbjct: 352 RTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 13/158 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-----GAVAK----L 98
+T LDS ++ +++ N+ + TA T N SSRSH+I I+ G K L
Sbjct: 205 ITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGIL 264
Query: 99 HLVDLAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLT 155
+LVDLAGSE+L S+ LR E + IN SL L V+ AL+ P+ + HIP+RNS LT
Sbjct: 265 NLVDLAGSERLNSSMVVGERLR-ETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLT 323
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+ SL G+ T M +S + ++T+ +L+FA +
Sbjct: 324 YLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 57 NSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVAKLH----LVDLAGSEQLFSL 112
+ +++I G+ + + T N+ SSRSH I +LH LVDLAG+E+
Sbjct: 257 DDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADT 316
Query: 113 SD-NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-LGGNGITSM 170
S + R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +G N T M
Sbjct: 317 SSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCM 375
Query: 171 IAVVSMDRYNQHQTLATLKFAQRTLRVS 198
IA++S + TL TL++A R +S
Sbjct: 376 IAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 57 NSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVAKLH----LVDLAGSEQLFSL 112
+ +++I G+ + + T N+ SSRSH I +LH LVDLAG+E+
Sbjct: 185 DDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADT 244
Query: 113 SD-NYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-LGGNGITSM 170
S + R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +G N T M
Sbjct: 245 SSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCM 303
Query: 171 IAVVSMDRYNQHQTLATLKFAQRTLRVS 198
IA++S + TL TL++A R +S
Sbjct: 304 IAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKL 98
+T K+ S + ++ ++ + TA T+ N +SSRSH++ ++ + KL
Sbjct: 184 VTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKL 243
Query: 99 HLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTS 156
+LVDLAGSE++ S + E + IN SL L V+ AL+ P+ + +IP+RNS LT
Sbjct: 244 NLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTY 303
Query: 157 ILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+ SL G+ T M + D + +TL +L+FA +
Sbjct: 304 LLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SSRSH+I I+ G+ AK L+LVD
Sbjct: 184 KLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVD 243
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGSE++ S LR E + IN SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 244 LAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 302
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 303 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SSRSH+I I+ G+ AK L+LVD
Sbjct: 241 KLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVD 300
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGSE++ S LR E + IN SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 301 LAGSERINVSQVVGDRLR-ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 359
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 360 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SSRSH+I I+ G+ AK L+LVD
Sbjct: 196 KLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVD 255
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGSE++ S LR E + IN SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 256 LAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 314
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 315 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 66 GNENKVTAVTKMNAQSSRSHTICTIYFGAV---AKLHLVDLAGSEQLFSLSDNYLLRNEA 122
G N+ T MN+ SSRSH I TI+ + +++++VDLAGSE + + R E
Sbjct: 202 GTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEG 261
Query: 123 RKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQH 182
INL L + +V++++ IPYR+S LT++L+ SL + +A +S + +
Sbjct: 262 VNINLGLLSINKVVMSMAA-GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLS 320
Query: 183 QTLATLKFA 191
+TL+TL+F
Sbjct: 321 ETLSTLRFG 329
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 66 GNENKVTAVTKMNAQSSRSHTICTIYFGAV---AKLHLVDLAGSEQLFSLSDNYLLRNEA 122
G N+ T MN+ SSRSH I TI+ + +++++VDLAGSE + + R E
Sbjct: 202 GTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEG 261
Query: 123 RKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQH 182
INL L + +V++++ IPYR+S LT++L+ SL + +A +S + +
Sbjct: 262 VNINLGLLSINKVVMSMAA-GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLS 320
Query: 183 QTLATLKFA 191
+TL+TL+F
Sbjct: 321 ETLSTLRFG 329
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SSRSH+I I+ G+ AK L+LVD
Sbjct: 185 KLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVD 244
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGSE++ S LR E + I SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 245 LAGSERINVSQVVGDRLR-ETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 304 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Query: 68 ENKVTAVTKMNAQSSRSHTICTIYFGAV---------AKLHLVDLAGSEQL---FSLSDN 115
+N+ A T N +SSRSH++ + A L LVDLAGSE+L +L
Sbjct: 235 QNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPG 294
Query: 116 YLLR-NEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVV 174
R E + IN SL L V++AL H+PYRNS LT +L++SLGG+ M +
Sbjct: 295 ERERLRETQAINSSLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNI 353
Query: 175 SMDRYNQHQTLATLKFAQR 193
S N ++L +L+FA +
Sbjct: 354 SPLEENVSESLNSLRFASK 372
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 46 ASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA----------- 94
A LT + + + A++ I G +++ TKMN +SSRSHTI + +
Sbjct: 164 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEG 223
Query: 95 ---VAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL-DEPNRHHIPYR 150
V+ L+LVDLAGSE+ + E IN SL L QV+ L D I YR
Sbjct: 224 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYR 283
Query: 151 NSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFA 191
+S LT IL++SLGGN T +I ++ ++ +TL L+FA
Sbjct: 284 DSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQFA 322
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SSRSH+I I+ G+ AK L+LVD
Sbjct: 185 KLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVD 244
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGS ++ S LR E + IN SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 245 LAGSARINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 304 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 86/154 (55%), Gaps = 13/154 (8%)
Query: 52 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-GAVAK--------LHLVD 102
KL+S ++ N+ + TA T N SS SH+I I+ G+ AK L+LVD
Sbjct: 185 KLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVD 244
Query: 103 LAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILK 159
LAGSE++ S LR E + IN SL L V+ AL +P+ + HIP+RNS LT +L+
Sbjct: 245 LAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SL G+ T M +S + ++TL +L+FA +
Sbjct: 304 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKLHLVDLAGSEQLFSL 112
L+ T N+ TA T N +SSRSH + + +V ++LVDLAGSE
Sbjct: 237 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES---- 292
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
E + IN SL L V++AL + + HIPYRNS LT +L SLGGN T M
Sbjct: 293 PKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 351
Query: 173 VVSMDRYNQHQTLATLKFA 191
VS + +++ +L+FA
Sbjct: 352 NVSPFQDCFQESVKSLRFA 370
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKLHLVDLAGSEQLFSL 112
L+ T N+ TA T N +SSRSH + + +V ++LVDLAGSE
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES---- 295
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
E + IN SL L V++AL + + HIPYRNS LT +L SLGGN T M
Sbjct: 296 PKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 354
Query: 173 VVSMDRYNQHQTLATLKFA 191
VS + +++ +L+FA
Sbjct: 355 NVSPFQDCFQESVKSLRFA 373
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKLHLVDLAGSEQLFSL 112
L+ T N+ TA T N +SSRSH + + +V ++LVDLAGSE
Sbjct: 243 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES---- 298
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
E + IN SL L V++AL + + HIPYRNS LT +L SLGGN T M
Sbjct: 299 PKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 357
Query: 173 VVSMDRYNQHQTLATLKFA 191
VS + +++ +L+FA
Sbjct: 358 NVSPFQDCFQESVKSLRFA 376
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKLHLVDLAGSEQLFSL 112
L+ T N+ TA T N +SSRSH + + +V ++LVDLAGSE
Sbjct: 251 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES---- 306
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
E + IN SL L V++AL + + HIPYRNS LT +L SLGGN T M
Sbjct: 307 PKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 365
Query: 173 VVSMDRYNQHQTLATLKFA 191
VS + +++ +L+FA
Sbjct: 366 NVSPFQDCFQESVKSLRFA 384
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 73 AVTKMNAQSSRSHTICTIYFG------AVAKLHLVDLAGSEQ-LFSLSDNYLLRNEARKI 125
V N +SSRSH I I ++ K+ +DLAGSE+ ++S N + + I
Sbjct: 201 GVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANI 260
Query: 126 NLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTL 185
N SL L++ + A+D +++HIP+R+S LT +L+D G + MIA +S QTL
Sbjct: 261 NRSLLALKECIRAMDS-DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTL 319
Query: 186 ATLKFAQR 193
TL+++ R
Sbjct: 320 NTLRYSSR 327
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 122 ARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQ 181
A+ IN SL L V+ AL E + H+PYR+S +T IL+DSL GN T+++ S +N+
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 182 HQTLATLKFAQRTLRVSNYLQGNF 205
+T +TL F QR + N + N
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 126 NLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTL 185
N SL L V+ AL E + H+PYR+S +T IL+DSLGGN T+++ S +N+ +T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 186 ATLKFAQRTLRVSNYLQGNF 205
+TL F QR + N + N
Sbjct: 61 STLMFGQRAKTIKNTVSVNL 80
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFG---------AVAKLHLVDLAGSEQLFSL 112
L+ T N+ TA T N +SSRSH + + +V ++LVDLAGSE
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES---- 295
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
E + I SL L V++AL + + HIPYRNS LT +L SLGGN T M
Sbjct: 296 PKTSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 354
Query: 173 VVSMDRYNQHQTLATLKFA 191
VS + +++ +L+FA
Sbjct: 355 NVSPFQDCFQESVKSLRFA 373
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKL 98
T + + S + +I G N+ AVT MN SSRSH+I I KL
Sbjct: 168 CTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKL 227
Query: 99 HLVDLAGSEQL 109
+LVDLAGSE++
Sbjct: 228 YLVDLAGSEKV 238
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 161 SLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
LGGN + +M+ V + R+ H ++ TL + ++ NY+ N
Sbjct: 71 ELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,609,453
Number of Sequences: 62578
Number of extensions: 254774
Number of successful extensions: 841
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 67
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)