RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7232
(222 letters)
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 160 bits (408), Expect = 3e-48
Identities = 78/206 (37%), Positives = 103/206 (50%), Gaps = 35/206 (16%)
Query: 1 YDLLNGNKEV-TLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSA 59
YDLL+ + + L+ DP+ G G LT ++ S
Sbjct: 139 YDLLSPSSKKKKLRIR--------------EDPKKGVYVKG-------LTEVEVTSAEEV 177
Query: 60 VQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF----------GAVAKLHLVDLAGSEQL 109
++L+ GN+N+ A T MN +SSRSH I TI KL+LVDLAGSE+
Sbjct: 178 LELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSVKTGKLNLVDLAGSERA 237
Query: 110 FS--LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGI 167
+ L+ EA IN SL L V+ AL E HIPYR+S LT +L+DSLGGN
Sbjct: 238 SKTGAAGGRRLK-EAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDSLGGNSK 296
Query: 168 TSMIAVVSMDRYNQHQTLATLKFAQR 193
T MIA +S N +TL+TL+FA R
Sbjct: 297 TLMIANISPSDSNYEETLSTLRFASR 322
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 151 bits (383), Expect = 1e-44
Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 38 SPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF----- 92
P G LT ++ S A+ L+ G +N+ TA T MN +SSRSH I TI+
Sbjct: 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNT 218
Query: 93 ------GAVAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR-H 145
+KL+LVDLAGSE+ EA+ IN SL L V+ AL +
Sbjct: 219 TNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKK 278
Query: 146 HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
HIPYR+S LT +L+DSLGGN T MIA +S N +TL+TL+FA R
Sbjct: 279 HIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASR 326
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 148 bits (375), Expect = 2e-43
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 11/188 (5%)
Query: 17 FNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTK 76
++L A S T L++ + A+ L+ G N+ A T
Sbjct: 145 YDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETS 204
Query: 77 MNAQSSRSHTICTIYFGA-----------VAKLHLVDLAGSEQLFSLSDNYLLRNEARKI 125
MN SSRSH I TI+ + ++KL+LVDLAGSE++ + + EA+ I
Sbjct: 205 MNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYI 264
Query: 126 NLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTL 185
N SL +LEQV+ AL E R H+PYRNS LT +L+DSLGGN T M+A + ++ N +TL
Sbjct: 265 NKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETL 324
Query: 186 ATLKFAQR 193
+TL+FAQR
Sbjct: 325 STLRFAQR 332
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 146 bits (370), Expect = 1e-42
Identities = 70/159 (44%), Positives = 90/159 (56%), Gaps = 14/159 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-----------GAVA 96
LT + S L+ GN+N+ A TKMN +SSRSH + TI G +
Sbjct: 167 LTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGSGKAS 226
Query: 97 KLHLVDLAGSEQLFSLSDNYLLRN-EARKINLSLHYLEQVMIALDEPNR-HHIPYRNSTL 154
KL+LVDLAGSE+ + R EA IN SL L V+ AL + ++ HIPYR+S L
Sbjct: 227 KLNLVDLAGSER-AKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKL 285
Query: 155 TSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
T +L+DSLGGN T MIA VS N +TL+TL+FA R
Sbjct: 286 TRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFASR 324
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 131 bits (331), Expect = 7e-37
Identities = 62/144 (43%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 59 AVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLHLVDLAGSEQL 109
+++I G N+ A T MN +SSRSH+I I KL LVDLAGSE++
Sbjct: 178 VLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKV 237
Query: 110 FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITS 169
EA+KIN SL L V+ AL + HIPYR+S LT IL+DSLGGN T+
Sbjct: 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTT 297
Query: 170 MIAVVSMDRYNQHQTLATLKFAQR 193
+I S YN+ +TL+TL+F R
Sbjct: 298 LIICCSPSSYNESETLSTLRFGAR 321
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 126 bits (319), Expect = 4e-35
Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKL 98
LT + S +L+ G++N+ A T MN SSRSH + + KL
Sbjct: 169 LTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKL 228
Query: 99 HLVDLAGSEQLF-SLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSI 157
+LVDLAGSE+L S + L+ EA+ IN SL L V+ AL + H +PYRNS LT +
Sbjct: 229 NLVDLAGSERLKKSGATGDRLK-EAQAINKSLSALGDVISALRSKDSH-VPYRNSKLTYL 286
Query: 158 LKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
L+DSLGGN T M +S N +TL +L+FA R
Sbjct: 287 LQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASR 322
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 125 bits (316), Expect = 1e-34
Identities = 65/168 (38%), Positives = 88/168 (52%), Gaps = 23/168 (13%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------- 94
LT ++S + + G+ ++ TA T MN+QSSRSH I TI
Sbjct: 170 LTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGD 229
Query: 95 ------VAKLHLVDLAGSEQLF-SLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRH-- 145
+K H VDLAGSE+L + + L+ E IN L L V+ AL + ++
Sbjct: 230 DKNSTLTSKFHFVDLAGSERLKKTGATGDRLK-EGISINSGLLALGNVISALGDESKKGS 288
Query: 146 HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
H+PYR+S LT +L+DSLGGN T MIA VS N +TL TLK+A R
Sbjct: 289 HVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANR 336
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 124 bits (314), Expect = 2e-34
Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 14/145 (9%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------VAKLHLVDLAGSE-Q 108
L+ GN+N+ T MN SSRSH+I TI V KL+LVDLAGSE Q
Sbjct: 186 LMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQ 245
Query: 109 LFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGIT 168
+ + L+ EA KINLSL L V+ AL + HIPYR+S LT +L+DSLGGN T
Sbjct: 246 SKTGATGDRLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKT 304
Query: 169 SMIAVVSMDRYNQHQTLATLKFAQR 193
M A + YN +TL+TL++A R
Sbjct: 305 VMCANIGPADYNYDETLSTLRYANR 329
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 120 bits (302), Expect = 2e-32
Identities = 65/154 (42%), Positives = 88/154 (57%), Gaps = 15/154 (9%)
Query: 53 LDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIY------------FGAVAKLHL 100
+++ N ++L+ G+ + TA T MN QSSRSH+I +I + KL+L
Sbjct: 188 VNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNL 247
Query: 101 VDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILK 159
VDLAGSE + S R EA IN SL L +V+ AL E HIPYR S LT +L+
Sbjct: 248 VDLAGSENI-GRSGAENKRAREAGNINQSLLTLGRVINALVE-KSPHIPYRESKLTRLLQ 305
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
DSLGG TS+IA +S N +TL+TL++A R
Sbjct: 306 DSLGGRTKTSIIATISPASINLEETLSTLEYAHR 339
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 118 bits (298), Expect = 4e-32
Identities = 66/170 (38%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 39 PGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---- 94
P G A LT + S ++L++ GN N+ T+ NA SSRSH + I
Sbjct: 166 PNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRT 225
Query: 95 --------VAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDEPNRH 145
+ KL L+DLAGSE+ S ++N R E IN SL L + AL + +
Sbjct: 226 ASINQQVRIGKLSLIDLAGSERA-SATNNRGQRLKEGANINRSLLALGNCINALVDGKKK 284
Query: 146 --HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
HIPYR+S LT +LKDSLGGN T MIA +S + +T TLK+A R
Sbjct: 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANR 334
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 116 bits (293), Expect = 2e-31
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
+DLLN K +++ L Q LT K + S++ +
Sbjct: 145 FDLLNDRKRLSV------LEDGKGNVQIVG-----------------LTEKPVTSVDELL 181
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIY------FGAVAKLHLVDLAGSEQLFS--L 112
+LI +GN + T T N QSSRSH I I + KL +DLAGSE+ +
Sbjct: 182 ELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSER-GADTS 240
Query: 113 SDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIA 172
+ R E +IN SL L++ + AL H +P+R S LT +L+DS GN T MIA
Sbjct: 241 EHDRQTRKEGAEINKSLLALKECIRALASNKAH-VPFRGSKLTQVLRDSFIGNSKTVMIA 299
Query: 173 VVSMDRYNQHQTLATLKFAQRT 194
+S + TL TL++A R
Sbjct: 300 TISPSASSCEHTLNTLRYADRV 321
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 116 bits (292), Expect = 4e-31
Identities = 63/171 (36%), Positives = 86/171 (50%), Gaps = 20/171 (11%)
Query: 54 DSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF-------------GAVAKLHL 100
S L+ GN+++ TA T MN SSRSH + TI V+K+ L
Sbjct: 186 TSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISL 245
Query: 101 VDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDE-------PNRHHIPYRNST 153
VDLAGSE+ S E IN SL L +V+ AL + IPYR+S
Sbjct: 246 VDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSV 305
Query: 154 LTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
LT +LK++LGGN T+MIA +S N +TL+TL++A R ++ N N
Sbjct: 306 LTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 114 bits (287), Expect = 2e-30
Identities = 66/165 (40%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 46 ASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI----------YFGAV 95
A LT + + S +QLI G +N+ T N +SSRSHTI + G V
Sbjct: 158 AGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTV 217
Query: 96 --AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEP-NRHHIPYRNS 152
+ L+L+DLAGSE+ S + R E IN SL L V+ L E N HIPYR+S
Sbjct: 218 RVSTLNLIDLAGSERA-SQTGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDS 276
Query: 153 TLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRV 197
LT IL+ SL GN T++I +S + +TL TLKFA R +V
Sbjct: 277 KLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 111 bits (280), Expect = 1e-28
Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 46 ASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAV---------A 96
A LT K + S + L+ G +N+ TA T++N +SSRSH+I I + +
Sbjct: 175 AGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETS 234
Query: 97 KLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL-DEPNRHHIPYRNSTLT 155
KL LVDLAGSE+ + E IN SL L V+ AL D+ HIPYR S LT
Sbjct: 235 KLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLT 294
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+DSLGGN T +I +S + +T+ TLKFA R
Sbjct: 295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASR 332
Score = 28.2 bits (63), Expect = 3.5
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 67 NENKVTAVTKMNAQSSRSHTI-CTIYFGAVAK-----LHLVDLAGSEQLFSLSDNYLLRN 120
++ + +A TK+N +SSRSH+ G+ + L+ VDLAGSE+ S S LLR
Sbjct: 488 SKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELSLNQVDLAGSERKVSQSVGELLR- 546
Query: 121 EARKINLSLH 130
E + +N SL
Sbjct: 547 ETQSLNKSLS 556
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 105 bits (264), Expect = 3e-27
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 39 PGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---- 94
G +LT + + S Q+++ G N+ A T MN++SSRSH + T +
Sbjct: 165 IKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK 224
Query: 95 -------VAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDE---PNR 144
++L+LVDLAGSE+ + EA+ IN SL L V++AL + +
Sbjct: 225 ASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQ 284
Query: 145 HHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
H+PYR+S LT +L+DSLGGN T++IA VS +TL+TLKFAQR
Sbjct: 285 RHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQR 333
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 98.7 bits (246), Expect = 9e-25
Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 47 SLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVA-------KLH 99
LT K + S+ + + ++N+ A TK+N SSRSH + I A KL+
Sbjct: 165 GLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLN 224
Query: 100 LVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILK 159
L+DLAGSE + + E+ IN SL L +V+ AL++ IPYR S LT +L+
Sbjct: 225 LIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK-GLPRIPYRESKLTRLLQ 283
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
DSLGG M+A ++ +R TL+TL FA R
Sbjct: 284 DSLGGGSRCIMVANIAPERSFYQDTLSTLNFASR 317
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 88.4 bits (219), Expect = 7e-22
Identities = 55/127 (43%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------VAKLHLVDLAGSEQ 108
L+ GN N+ TA T MN SSRSH++ I+FG V K++LVDLAGSE+
Sbjct: 60 DLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSER 119
Query: 109 LFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGIT 168
+ E IN SL L V+ AL E + H +PYR S LT +L+DSLGGN T
Sbjct: 120 IDFSGAEGSRLTETANINKSLSTLGNVISALAERDSH-VPYRESKLTRLLQDSLGGNSRT 178
Query: 169 SMIAVVS 175
M+A +S
Sbjct: 179 LMVACIS 185
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 92.3 bits (229), Expect = 1e-21
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 47 SLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------ 94
+LT + + ++ QL++ G N+ T T +NA+SSRSH++ T +
Sbjct: 267 NLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326
Query: 95 -VAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNR----HHIPY 149
++++LVDLAGSE+ EA IN SL L ++ L E ++ HIPY
Sbjct: 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPY 386
Query: 150 RNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGNFVQEQ 209
R+S LT +L++SLGGN +M+ +S + + +T +TL+FAQR + N N V +
Sbjct: 387 RDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446
Query: 210 DSYH 213
D
Sbjct: 447 DVNF 450
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 75.9 bits (187), Expect = 3e-16
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 59 AVQLIVTGNENKVTAVTKMNAQSSRSHTICTI--------YFG---------AVAKLHLV 101
A ++ G +N+ A TK+N +SSRSH++ TI G V++L LV
Sbjct: 187 AREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLV 246
Query: 102 DLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDE-----PNRHHIPYRNSTLT 155
DLAGSE+ S + N R EA IN SL L + + L E +PYR+S LT
Sbjct: 247 DLAGSERT-SRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLT 305
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRT 194
+ ++ G G MI V+ + +TL +KF+
Sbjct: 306 HLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIA 344
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 30.1 bits (68), Expect = 0.83
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 92 FGAVAKLHLV-DLAGSEQLFS-LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPY 149
F KLHL+ D +LF+ L ++ Y+ ++++ALD ++ I Y
Sbjct: 74 FQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRV-----YIAEIVLALDHLHQLGIIY 128
Query: 150 RNSTLTSILKDSLG 163
R+ L +IL DS G
Sbjct: 129 RDIKLENILLDSEG 142
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 29.3 bits (66), Expect = 1.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 136 MIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMD 177
+I LDEP + P TL IL D L G T ++A +D
Sbjct: 159 VIVLDEPMAYLDPRGQETLMEIL-DRLHNQGKTVIVATHDVD 199
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 28.8 bits (64), Expect = 2.4
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 92 FGAVAKLHLV-DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYR 150
F KLHL+ D +LF+ +L + E K Y ++++AL+ ++ I YR
Sbjct: 74 FQTDTKLHLILDYINGGELFT----HLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYR 129
Query: 151 NSTLTSILKDSLG 163
+ L +IL DS G
Sbjct: 130 DIKLENILLDSNG 142
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 28.4 bits (63), Expect = 3.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 92 FGAVAKLHLV-DLAGSEQLFS--LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIP 148
F AKLHL+ D ++F+ + +E R Y ++++AL+ ++ I
Sbjct: 74 FQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVR------FYSGEIILALEHLHKLGIV 127
Query: 149 YRNSTLTSILKDSLG 163
YR+ L +IL DS G
Sbjct: 128 YRDIKLENILLDSEG 142
>gnl|CDD|112262 pfam03437, BtpA, BtpA family. The BtpA protein is tightly
associated with the thylakoid membranes, where it
stabilises the reaction centre proteins of photosystem
I.
Length = 254
Score = 27.8 bits (62), Expect = 4.3
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 111 SLSDNYLLRNEARKINLSLHYLE-QVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITS 169
+ SD +L A ++ L ++ I D +H + N + S + D++ +
Sbjct: 116 AASDQGILEGNAGELARYRKLLPSRIKILADVHVKHAVHLGNRDIESAVLDTIERGLADA 175
Query: 170 MIAVVSMDRYNQHQTLATLKFAQRTLRV 197
+I +S L LK A+ T+ V
Sbjct: 176 VI--LSGKTTGGEVDLEELKLAKETVPV 201
>gnl|CDD|129821 TIGR00738, rrf2_super, Rrf2 family protein. This model represents
a superfamily of probable transcriptional regulators.
One member, RRF2 of Desulfovibrio vulgaris is an
apparent regulatory protein experimentally
(MEDLINE:97293189). The N-terminal region appears
related to the DNA-binding biotin repressor region of
the BirA bifunctional according to results after three
rounds of PSI-BLAST with a fairly high stringency
[Unknown function, General].
Length = 132
Score = 26.8 bits (60), Expect = 4.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 100 LVDLA--GSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL 139
L+DLA E S+ + A + +S YLE+++ L
Sbjct: 14 LLDLALNPDEGPVSVKE------IAERQGISRSYLEKILRTL 49
>gnl|CDD|224870 COG1959, COG1959, Predicted transcriptional regulator
[Transcription].
Length = 150
Score = 26.9 bits (60), Expect = 6.6
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 100 LVDLA--GSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL 139
L+ LA S ++ A + +S YLE+++ L
Sbjct: 14 LLYLALLPGGGPVSSAE------IAERQGISPSYLEKILSKL 49
>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase.
Length = 357
Score = 27.1 bits (60), Expect = 7.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 165 NGITSMIAVVSMDRYNQ 181
G+TSMI VV MD N
Sbjct: 316 KGLTSMIEVVKMDYVNT 332
>gnl|CDD|224333 COG1415, COG1415, Uncharacterized conserved protein [Function
unknown].
Length = 373
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 188 LKFAQRTLRVSNYLQGNFVQEQDSYHYYHHVIVV 221
++ ++ +V N L QD Y YHH VV
Sbjct: 121 VEASRLVAKVDNVLL------QDGYDLYHHTFVV 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.369
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,754,767
Number of extensions: 955022
Number of successful extensions: 893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 33
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)