RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7232
(222 letters)
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 177 bits (452), Expect = 8e-55
Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA-----------VA 96
L+V A L+ G N++ A MN SSRSH I TIY A +
Sbjct: 198 LSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITS 257
Query: 97 KLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLT 155
K++LVDLAGSE S S+ +L+ EA IN SL +LEQ +IAL + R HIP+R LT
Sbjct: 258 KINLVDLAGSERLGKSGSEGQVLK-EATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLT 316
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
LKDSLGGN ++ + + +TL++L+FA R
Sbjct: 317 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASR 354
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 165 bits (419), Expect = 8e-50
Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D P G T + + S ++I G N+ AVT MN SSRSH++ I
Sbjct: 165 DKNRVPYVKG-------ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLI 217
Query: 91 YFGA---------VAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALD 140
KL+LVDLAGSE + ++ +L EA+ IN SL L V+ AL
Sbjct: 218 NVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLD-EAKNINKSLSALGNVISALA 276
Query: 141 EPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
+ N+ HIPYR+S LT IL++SLGGN T+++ S +N+ +T +TL F +R V N
Sbjct: 277 DGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKN 335
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 163 bits (416), Expect = 2e-49
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 18/179 (10%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
+ G G L + S+ +++ G + A T MN +SSRSH+I I
Sbjct: 162 EKNRGVYVKG-------LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVI 214
Query: 91 YFGA---------VAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALD 140
+L LVDLAGSE + + L EA+KIN SL L V+ AL
Sbjct: 215 TITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLE-EAKKINKSLSALGMVINALT 273
Query: 141 EPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
+ H+PYR+S LT IL++SLGGN T++I S YN +TL+TL+F R + N
Sbjct: 274 DGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN 332
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 157 bits (400), Expect = 2e-47
Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D P G T + + S + + I G N+ AVT MN SSRSH+I I
Sbjct: 158 DKNRVPYVKG-------CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 91 YFGA---------VAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALD 140
KL+LVDLAGSE + ++ +L EA+ IN SL L V+ AL
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLD-EAKNINKSLSALGNVISALA 269
Query: 141 EPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
E ++PYR+S +T IL+DSLGGN T+++ S YN+ +T +TL F QR
Sbjct: 270 E-GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 157 bits (399), Expect = 6e-47
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 31/200 (15%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
YDLL K V + + L + ++ + +
Sbjct: 152 YDLLQKRKMVAALE----------------NGKKEVVVKD-------LKILRVLTKEELI 188
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYF------GAVAKLHLVDLAGSE-QLFSLS 113
++ G + V N +SSRSH I I ++ K+ +DLAGSE ++S
Sbjct: 189 LKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVS 248
Query: 114 DNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAV 173
N + + IN SL L++ + A+D +++HIP+R+S LT +L+D G + MIA
Sbjct: 249 QNKQTQTDGANINRSLLALKECIRAMDS-DKNHIPFRDSELTKVLRDIFVGKSKSIMIAN 307
Query: 174 VSMDRYNQHQTLATLKFAQR 193
+S QTL TL+++ R
Sbjct: 308 ISPTISCCEQTLNTLRYSSR 327
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 157 bits (400), Expect = 6e-47
Identities = 70/176 (39%), Positives = 89/176 (50%), Gaps = 21/176 (11%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
P TG L+ S+ ++ GN+N+ T MN SSRSH I I
Sbjct: 182 RPDTGVYVKD-------LSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVI 234
Query: 91 YFGA------------VAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMI 137
V KL+LVDLAGSE Q + + L+ EA KINLSL L V+
Sbjct: 235 TIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLK-EATKINLSLSALGNVIS 293
Query: 138 ALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
AL + HIPYR+S LT +L+DSLGGN T M+A V YN +TL TL++A R
Sbjct: 294 ALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 349
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 156 bits (396), Expect = 1e-46
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---VAKLHLVDLA 104
T L S ++ G N+ T MN+ SSRSH I TI+ + +++++VDLA
Sbjct: 184 CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLA 243
Query: 105 GSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLG 163
GSE + + + E INL L + +V++++ + IPYR+S LT++L+ SL
Sbjct: 244 GSEGVRRTGHEGVARQ-EGVNINLGLLSINKVVMSMAAGHTV-IPYRDSVLTTVLQASLT 301
Query: 164 GNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
+ +A +S + + +TL+TL+F +
Sbjct: 302 AQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 154 bits (392), Expect = 7e-46
Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 15/159 (9%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------V 95
L + + + Q++ G + TA T MNA SSRSH++ ++ +
Sbjct: 190 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKI 249
Query: 96 AKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTL 154
KL+LVDLAGSE S + + R EA IN SL L +V+ AL E H +PYR S L
Sbjct: 250 GKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPH-VPYRESKL 307
Query: 155 TSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
T IL+DSLGG TS+IA +S N +TL+TL++A R
Sbjct: 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 346
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 153 bits (390), Expect = 7e-46
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Query: 30 PDPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICT 89
PD PG LT ++ S++ ++ G+ N+ T T +N SSRSH +
Sbjct: 160 PDGSGQLYVPG-------LTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLI 212
Query: 90 IYF---------GAVAKLHLVDLAGSEQLF-SLSDNYLLRNEARKINLSLHYLEQVMIAL 139
+ KL+LVDLAGSE++ S ++ LR EA+ IN SL L V+ AL
Sbjct: 213 VTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLR-EAQHINKSLSALGDVIAAL 271
Query: 140 DEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+ H+P+RNS LT +L+DSL G+ T M+ VS N +TL +LKFA+R
Sbjct: 272 RS-RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAER 324
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 153 bits (389), Expect = 1e-45
Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 21/175 (12%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D G G L++ ++ + L+ G N+ A T+MN SSRSH+I +
Sbjct: 166 DKTRGIYVDG-------LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMV 218
Query: 91 YFGA-----------VAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIA 138
V KL+LVDLAGSE Q + + L E KINLSL L V+
Sbjct: 219 RIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLV-EGAKINLSLSALGLVISK 277
Query: 139 LDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
L E H IPYR+S LT +L+DSLGGN T M A +S N +T++TL++A R
Sbjct: 278 LVEGATH-IPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADR 331
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 153 bits (390), Expect = 3e-45
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D + PG L+ K + S + + + N+ T++N +SSRSH + +
Sbjct: 179 DCRGNILIPG-------LSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLV 231
Query: 91 YFGA----------VAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIAL 139
KL+L+DLAGSE + N LR E+ IN SL L +V+ AL
Sbjct: 232 KVDQRERLAPFRQREGKLYLIDLAGSEDN-RRTGNKGLRLKESGAINTSLFVLGKVVDAL 290
Query: 140 DEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
++ +PYR+S LT +L+DSLGG+ + +IA ++ +R T++ L FA R
Sbjct: 291 NQ-GLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 152 bits (387), Expect = 3e-45
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 13/158 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKL 98
+T KL+S ++ N+ + TA T N SS SH+I I+ L
Sbjct: 181 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 240
Query: 99 HLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLT 155
+LVDLAGSE++ ++S R E + IN SL L V+ AL +P+ + HIP+RNS LT
Sbjct: 241 NLVDLAGSERI-NVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+ SL G+ T M +S + ++TL +L+FA +
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 151 bits (385), Expect = 6e-45
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
DLL K + I + + D R + G +T K+ S +
Sbjct: 147 LDLLRDFKSHDNIDEILDSQKHDIRHD---HEKQGTYITN-------VTRMKMTSTSQVD 196
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKLHLVDLAGSEQLF- 110
++ ++ + TA T+ N +SSRSH++ ++ KL+LVDLAGSE++
Sbjct: 197 TILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINS 256
Query: 111 SLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLTSILKDSLGGNGIT 168
S LR E + IN SL L V+ AL+ P+ + +IP+RNS LT +L+ SL G+ T
Sbjct: 257 SAVTGERLR-ETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315
Query: 169 SMIAVVSMDRYNQHQTLATLKFAQR 193
M + D + +TL +L+FA +
Sbjct: 316 LMFVNIPPDPNHISETLNSLRFASK 340
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 151 bits (385), Expect = 6e-45
Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D + G + ++ L+ + L+ GN + T T +N SSRSHT+ T+
Sbjct: 168 DERGNVVLCG-------VKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTV 220
Query: 91 YF-----------------GAVAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYL 132
V+K H VDLAGSE L + S L+ E+ +IN SL L
Sbjct: 221 TLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLK-ESIQINSSLLAL 279
Query: 133 EQVMIALDEPNRH--HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKF 190
V+ AL +P R HIPYR+S +T ILKDSLGGN T MIA VS + +TL TL +
Sbjct: 280 GNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNY 339
Query: 191 AQR 193
A R
Sbjct: 340 ASR 342
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 151 bits (384), Expect = 1e-44
Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------------V 95
L + S + +L+ G E + TA T MNAQSSRSHT+ +I +
Sbjct: 200 LEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKI 259
Query: 96 AKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTL 154
KL+LVDLAGSE + + +R E IN SL L +V+ AL + H +PYR S L
Sbjct: 260 GKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPH-VPYRESKL 318
Query: 155 TSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
T +L++SLGG TS+IA +S + +TL+TL++A R
Sbjct: 319 TRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHR 357
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 150 bits (382), Expect = 2e-44
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 19/173 (10%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D + + +TV + + +I G+E + T T MN QSSRSH I ++
Sbjct: 160 DSKGMVSVEN-------VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV 212
Query: 91 YFGA---------VAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMIALD 140
+ KL VDLAGSE++ S + + EA+ IN SL L V+ AL
Sbjct: 213 IIESTNLQTQAIARGKLSFVDLAGSERV-KKSGSAGNQLKEAQSINKSLSALGDVISALS 271
Query: 141 EPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
N+H IPYRN LT ++ DSLGGN T M +S N +T +L +A R
Sbjct: 272 SGNQH-IPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASR 323
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 151 bits (383), Expect = 3e-44
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 30/199 (15%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
+DLLN ++ + D + G L ++S + +
Sbjct: 204 FDLLNKKAKLRVLE----------------DGKQQVQVVG-------LQEHLVNSADDVI 240
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYF----GAVAKLHLVDLAGSE-QLFSLSDN 115
++I G+ + + T N+ SSRSH I K LVDLAG+E + S +
Sbjct: 241 KMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSAD 300
Query: 116 YLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-LGGNGITSMIAVV 174
R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +G N T MIA +
Sbjct: 301 RQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359
Query: 175 SMDRYNQHQTLATLKFAQR 193
S + TL TL++A R
Sbjct: 360 SPGISSCEYTLNTLRYADR 378
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 151 bits (383), Expect = 4e-44
Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKL 98
+T KL+S ++ N+ + TA T N SSRSH+I I+ L
Sbjct: 237 VTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 296
Query: 99 HLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN--RHHIPYRNSTLT 155
+LVDLAGSE S LR E + IN SL L V+ AL +P+ + HIP+RNS LT
Sbjct: 297 NLVDLAGSERINVSQVVGDRLR-ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT 355
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+ SL G+ T M +S + ++TL +L+FA +
Sbjct: 356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 151 bits (383), Expect = 5e-44
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
+DLLN ++ + D + G L + + +
Sbjct: 224 FDLLNKKAKLRVLE----------------DSRQQVQVVG-------LQEYLVTCADDVI 260
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYF----GAVAKLHLVDLAGSE-QLFSLSDN 115
++I G+ + + T N+ SSRSH I K LVDLAG+E + S +
Sbjct: 261 KMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSAD 320
Query: 116 YLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-LGGNGITSMIAVV 174
R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +G N T MIA++
Sbjct: 321 RQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379
Query: 175 SMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S + TL TL++A R +S++ +
Sbjct: 380 SPGISSCEYTLNTLRYADRVKELSHHHHHH 409
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 149 bits (379), Expect = 7e-44
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKL 98
+ L+ +N+ A T N +SSRSH++ + A L
Sbjct: 215 ARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPL 274
Query: 99 HLVDLAGSEQLFS-----LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNST 153
LVDLAGSE+L + LR E + IN SL L V++AL H+PYRNS
Sbjct: 275 SLVDLAGSERLDPGLALGPGERERLR-ETQAINSSLSTLGLVIMALSN-KESHVPYRNSK 332
Query: 154 LTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
LT +L++SLGG+ M +S N ++L +L+FA +
Sbjct: 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 150 bits (381), Expect = 9e-44
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA---------VAKL 98
+T + + N L+ T N+ TA T N +SSRSH + + V +
Sbjct: 229 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 288
Query: 99 HLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSIL 158
+LVDLAGSE S + + E + IN SL L V++AL + H IPYRNS LT +L
Sbjct: 289 NLVDLAGSE---SPKTSTRMT-ETKNINRSLSELTNVILALLQKQDH-IPYRNSKLTHLL 343
Query: 159 KDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
SLGGN T M VS + +++ +L+FA
Sbjct: 344 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 378
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 149 bits (378), Expect = 1e-43
Identities = 64/188 (34%), Positives = 91/188 (48%), Gaps = 33/188 (17%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
P GP L+ + S N L+ +GN+ + A T MN SSRSH + I
Sbjct: 171 HPLLGPYVED-------LSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI 223
Query: 91 YF-------------GAVAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQVM 136
F V+K+ LVDLAGSE + + L+ E IN SL L +V+
Sbjct: 224 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVI 282
Query: 137 IALDEPN-----------RHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTL 185
AL E + IPYR+S LT +L+++LGGN T+M+A +S N +TL
Sbjct: 283 SALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETL 342
Query: 186 ATLKFAQR 193
+TL++A R
Sbjct: 343 STLRYADR 350
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 148 bits (376), Expect = 1e-43
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 26/185 (14%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D LT + + + A++ I G +++ TKMN +SSRSHTI +
Sbjct: 156 DVNRNVYVAD-------LTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRM 208
Query: 91 YF--------------GAVAKLHLVDLAGSE-QLFSLSDNYLLRNEARKINLSLHYLEQV 135
V+ L+LVDLAGSE + + L+ E IN SL L QV
Sbjct: 209 ILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLK-EGCNINRSLFILGQV 267
Query: 136 MIALDEPNRH-HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRT 194
+ L + I YR+S LT IL++SLGGN T +I ++ ++ +TL L+FA
Sbjct: 268 IKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQFASTA 325
Query: 195 LRVSN 199
+ N
Sbjct: 326 KYMKN 330
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 148 bits (376), Expect = 2e-43
Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
GP G L+ + S L+ GN+++ A T MN +SSRSH + I
Sbjct: 173 HSVLGPYVDG-------LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKI 225
Query: 91 YF-------------GAVAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVM 136
V KL LVDLAGSE+ + + R E IN SL L V+
Sbjct: 226 TLTHTLYDVKSGTSGEKVGKLSLVDLAGSERA-TKTGAAGDRLKEGSNINKSLTTLGLVI 284
Query: 137 IALDEPN-----RHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFA 191
AL + + +PYR+S LT +LKDSLGGN T+M+A VS N +TL+TL++A
Sbjct: 285 SALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYA 344
Query: 192 QRTLRVSNY 200
R ++
Sbjct: 345 DRAKHHHHH 353
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 146 bits (371), Expect = 9e-43
Identities = 73/178 (41%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
D Q G G LT+ + S + L+ GN+N+ T MNA SSRSH + I
Sbjct: 182 DTQKGVVVHG-------LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQI 234
Query: 91 YF------------GAVAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVMI 137
Y +AK+ L+DLAGSE+ S S R E IN SL L V+
Sbjct: 235 YLRQQDKTASINQNVRIAKMSLIDLAGSERA-STSGAKGTRFVEGTNINRSLLALGNVIN 293
Query: 138 ALDEPNRH--HIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
AL + R HIPYRNS LT +LKDSLGGN T MIA VS T TLK+A R
Sbjct: 294 ALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 140 bits (354), Expect = 1e-39
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 45/198 (22%)
Query: 31 DPQTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTI 90
P GP LT + L ++ + G+ ++ A TKMN SSRSH + TI
Sbjct: 222 SPTEGPYVKD-------LTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274
Query: 91 YF-------------GAVAKLHLVDLAGSEQLFSLSDNYLLR-NEARKINLSLHYLEQVM 136
+++ LVDLAGSE+ ++ R E IN SL L +V+
Sbjct: 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERA-KSTEATGQRLREGSNINKSLTTLGRVI 333
Query: 137 IAL---------------------DEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVS 175
AL P +PYR+S LT +LKDSLGGN T+MIA +S
Sbjct: 334 AALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACIS 393
Query: 176 MDRYNQHQTLATLKFAQR 193
Y+ +TL+TL++A +
Sbjct: 394 PTDYD--ETLSTLRYADQ 409
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 100 bits (250), Expect = 1e-27
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 122 ARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQ 181
A+ IN SL L V+ AL E + H+PYR+S +T IL+DSL GN T+++ S +N+
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 182 HQTLATLKFAQRTLRVSNYLQGNFVQEQDSY 212
+T +TL F QR + N + N + +
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELTAEEW 91
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 94.3 bits (235), Expect = 3e-25
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 126 NLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTL 185
N SL L V+ AL E + H+PYR+S +T IL+DSLGGN T+++ S +N+ +T
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 186 ATLKFAQRTLRVSNYLQGNFVQEQDSY 212
+TL F QR + N + N + +
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEW 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 5e-06
Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 107/252 (42%)
Query: 12 LKNWIFNLPQSDQRAQGSPDPQ---TGPAS-PGNGRSGASLTVKKLDSLNSAVQLIVTGN 67
+ W+ N P + +PD + P S P G + +VT
Sbjct: 215 ILEWLEN-PSN------TPDKDYLLSIPISCPLIG-------------VIQLAHYVVTAK 254
Query: 68 ENKVT---AVTKMNAQSSRSHTICTIYFGAVAKLHLVDLAGSEQLFSLSDNYLLRNEARK 124
T + + + S + T AVA + S + F + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVT----AVA----IAETDSWESF-------FVSVRKA 299
Query: 125 INLSLHYLEQVMIALDEPNRHHIPYRNSTLT-SILKDSL-GGNGI-TSMIAVVSM----- 176
I + I + R + Y N++L SIL+DSL G+ + M+++ ++
Sbjct: 300 ITVLFF------IGV----RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 177 ----DRYNQH------------------------QTLATL------------------KF 190
++ N H Q+L L F
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 191 AQRTLRVSN-YL 201
++R L+ SN +L
Sbjct: 410 SERKLKFSNRFL 421
Score = 45.8 bits (108), Expect = 5e-06
Identities = 42/256 (16%), Positives = 75/256 (29%), Gaps = 99/256 (38%)
Query: 5 NGNKEVTLKNWI----------FNLP-----QSDQRAQGSPDP----------------- 32
+ K +T+ +I +LP S + +G P P
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 33 QTGPASPGNGRSGASLTVKKLDSLNSAVQLIVTG--------NEN--KVTAVTKMNAQ-- 80
+T P + SL N A L+V+G N K A + ++ Q
Sbjct: 355 KTNSHLPAGKQVEISLV-------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSR 406
Query: 81 ---SSRS--------------HTICTIYFGAVAKLHLVDLAGSEQLFSLSDNYL------ 117
S R H + + L DL + F+ D +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKD--IQIPVYD 461
Query: 118 ------LRNEARKINLSLHYLEQVMI------ALDEPNRHHI----PYRNSTLTSILKDS 161
LR + I+ + ++ ++ + HI P S L + +
Sbjct: 462 TFDGSDLRVLSGSISERI--VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 162 LGGNGITSMIAVVSMD 177
G G+ +I ++D
Sbjct: 520 KDGTGV-RVIVAGTLD 534
Score = 41.2 bits (96), Expect = 2e-04
Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 71/199 (35%)
Query: 77 MNAQSSRSHTI------CTI------YFGAVAKLHLVDLAGSEQL---FSLS-----DNY 116
M+A S+R T+ + +F A QL F+ + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIA------------SQLQEQFNKILPEPTEGF 48
Query: 117 LLRNE-ARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILK----DSLGGNGITSMI 171
+E L +L V ++ + L L L GN I ++
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 172 AVVSMDR-------------YNQHQTLATLKFAQRT----LRVSN------YL----QGN 204
A + + Y + +A F +++ R QGN
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 205 ---FVQE-QDSYHYYHHVI 219
+ +E +D Y YH ++
Sbjct: 166 TDDYFEELRDLYQTYHVLV 184
Score = 27.3 bits (60), Expect = 5.8
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 52/130 (40%)
Query: 100 LVDLAGSEQLFSLSDN-YLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSIL 158
L LA S+ ++ YR T+ +
Sbjct: 1770 LASLADV---MSIESLVEVVF-----------------------------YRGMTMQVAV 1797
Query: 159 KDSLGGNGITSMIAVV--SMDRYNQHQTLATL--KFAQRT---LRVSNYLQGNFVQEQDS 211
G MIA+ + + L + + +RT + + NY N +Q
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---NVENQQ-- 1852
Query: 212 YHYYHHVIVV 221
V
Sbjct: 1853 -------YVA 1855
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.022
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 45/166 (27%)
Query: 95 VAKLH---LVDLAGSEQLFSLSDNYLLRNEARKINLSLH--YLEQVMIALDEPNRH---- 145
V KLH LV+ E S+ YL + +LH ++ I +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 146 --------HIPY---------RNSTLTSILKD-----------SLGGNGITSMIAVVS-M 176
HI + R + + D S N S++ + +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 177 DRYNQHQTLATLKFAQRTLRVSNYLQGNFVQ--EQDSYHYYHHVIV 220
Y + K+ + V+ L +F+ E++ + ++
Sbjct: 528 KFYKPYICDNDPKYER---LVNAIL--DFLPKIEENLICSKYTDLL 568
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 23/46 (50%)
Query: 21 QSDQRAQGS-----PDPQTGPASPGNGRSGASLTVKKLDSLNSAVQ 61
Q+ ++ Q S D + PA L ++ + ++
Sbjct: 20 QALKKLQASLKLYADD--SAPA----------L------AIKATME 47
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A
{Bacillus subtilis}
Length = 129
Score = 27.5 bits (62), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 100 LVDLA--GSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL 139
+++LA E SL A+ NLS HYLEQ++ L
Sbjct: 15 MIELAKKHGEGPTSLKS------IAQTNNLSEHYLEQLVSPL 50
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein,
dimer, sulfenic acid, UNK function; 1.70A
{Staphylococcus aureus} PDB: 3t8t_A
Length = 143
Score = 27.2 bits (61), Expect = 2.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 100 LVDLA--GSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL 139
++ LA + SL A + NLS YLEQ++ L
Sbjct: 17 MISLAKKEGQGCISLKS------IAEENNLSDLYLEQLVGPL 52
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural
genomics, JOI for structural genomics, JCSG; HET: SO4;
2.06A {Listeria innocua}
Length = 159
Score = 27.3 bits (61), Expect = 3.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 100 LVDLA--GSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIAL 139
++LA + SL A+ NLS HYLEQ++ L
Sbjct: 33 TLELAKRIGDGPISLRS------IAQDKNLSEHYLEQLIGPL 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.369
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,213,990
Number of extensions: 175672
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 43
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)