RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7232
(222 letters)
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 121 bits (304), Expect = 1e-33
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 49 TVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYFG----AVAKLHLVDLA 104
+ + +++I G+ + + T N+ SSRSH I K LVDLA
Sbjct: 208 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLA 267
Query: 105 GSEQL-FSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDS-L 162
G+E+ + S + R E +IN SL L++ + AL + N+ H P+R S LT +L+DS +
Sbjct: 268 GNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSFI 326
Query: 163 GGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVS 198
G N T MIA++S + TL TL++A R +S
Sbjct: 327 GENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 117 bits (293), Expect = 3e-32
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYFGA------VAKLHLVDLAGSEQL-FSLS 113
++ G + V N +SSRSH I I + K+ +DLAGSE+ ++S
Sbjct: 189 LKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVS 248
Query: 114 DNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMIAV 173
N + + IN SL L++ + A+D +++HIP+R+S LT +L+D G + MIA
Sbjct: 249 QNKQTQTDGANINRSLLALKECIRAMDS-DKNHIPFRDSELTKVLRDIFVGKSKSIMIAN 307
Query: 174 VSMDRYNQHQTLATLKFAQR 193
+S QTL TL+++ R
Sbjct: 308 ISPTISCCEQTLNTLRYSSR 327
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 116 bits (292), Expect = 3e-32
Identities = 59/146 (40%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLHLVDLAGSEQLFS 111
I G N+ AVT MN SSRSH+I I KL+LVDLAGSE++
Sbjct: 179 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 238
Query: 112 LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMI 171
+ +EA+ IN SL L V+ AL E ++PYR+S +T IL+DSLGGN T+++
Sbjct: 239 TGAEGAVLDEAKNINKSLSALGNVISALAE-GSTYVPYRDSKMTRILQDSLGGNCRTTIV 297
Query: 172 AVVSMDRYNQHQTLATLKFAQRTLRV 197
S YN+ +T +TL F QR +
Sbjct: 298 ICCSPSSYNESETKSTLLFGQRAKTI 323
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 116 bits (291), Expect = 8e-32
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 24/179 (13%)
Query: 39 PGNGRSGASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF------ 92
P G L+ + S N L+ +GN+ + A T MN SSRSH + I F
Sbjct: 169 PLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHD 228
Query: 93 -------GAVAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPN-- 143
V+K+ LVDLAGSE+ S E IN SL L +V+ AL E +
Sbjct: 229 AETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSG 288
Query: 144 ---------RHHIPYRNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
IPYR+S LT +L+++LGGN T+M+A +S N +TL+TL++A R
Sbjct: 289 PNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 347
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 111 bits (278), Expect = 5e-30
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 13/164 (7%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF------------GAV 95
L + + + Q++ G + TA T MNA SSRSH++ ++ +
Sbjct: 182 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKI 241
Query: 96 AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLT 155
KL+LVDLAGSE + EA IN SL L +V+ AL E H+PYR S LT
Sbjct: 242 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLT 300
Query: 156 SILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSN 199
IL+DSLGG TS+IA +S N +TL+TL++A R + N
Sbjct: 301 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 344
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 110 bits (275), Expect = 1e-29
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 48 LTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKL 98
+T KL+S ++ N+ + TA T N SS SH+I I+ + L
Sbjct: 179 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL 238
Query: 99 HLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRH--HIPYRNSTLTS 156
+LVDLAGSE++ E + IN SL L V+ AL +P+ HIP+RNS LT
Sbjct: 239 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 298
Query: 157 ILKDSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQR 193
+L+ SL G+ T M +S + ++TL +L+FA +
Sbjct: 299 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 335
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 108 bits (270), Expect = 8e-29
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 16/213 (7%)
Query: 1 YDLLNGNKEVTLKNWIFNLPQSDQRAQGSPDPQTGPASPGNGRSGASLTVKKLDSLNSAV 60
Y + E+ ++ L + + G G L + S+
Sbjct: 131 YTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKG-------LLEIYVSSVQEVY 183
Query: 61 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLHLVDLAGSEQLFS 111
+++ G + A T MN +SSRSH+I I +L LVDLAGSE++
Sbjct: 184 EVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGK 243
Query: 112 LSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGNGITSMI 171
+ EA+KIN SL L V+ AL + H+PYR+S LT IL++SLGGN T++I
Sbjct: 244 TGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLI 303
Query: 172 AVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGN 204
S YN +TL+TL+F R + N + N
Sbjct: 304 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 336
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 103 bits (258), Expect = 7e-27
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 55 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLHLVDLAG 105
N L+ T N+ TA T N +SSRSH + + +V ++LVDLAG
Sbjct: 222 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAG 281
Query: 106 SEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILKDSLGGN 165
SE E + IN SL L V++AL + H IPYRNS LT +L SLGGN
Sbjct: 282 SES----PKTSTRMTETKNINRSLSELTNVILALLQKQDH-IPYRNSKLTHLLMPSLGGN 336
Query: 166 GITSMIAVVSMDRYNQHQTLATLKFAQR 193
T M VS + +++ +L+FA
Sbjct: 337 SKTLMFINVSPFQDCFQESVKSLRFAAS 364
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 101 bits (251), Expect = 5e-26
Identities = 60/170 (35%), Positives = 80/170 (47%), Gaps = 10/170 (5%)
Query: 49 TVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYF---------GAVAKLH 99
TV + + +I G+E + T T MN QSSRSH I ++ A KL
Sbjct: 166 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLS 225
Query: 100 LVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQVMIALDEPNRHHIPYRNSTLTSILK 159
VDLAGSE++ EA+ IN SL L V+ AL HIPYRN LT ++
Sbjct: 226 FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQHIPYRNHKLTMLMS 284
Query: 160 DSLGGNGITSMIAVVSMDRYNQHQTLATLKFAQRTLRVSNYLQGNFVQEQ 209
DSLGGN T M +S N +T +L +A R + N N ++
Sbjct: 285 DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE 334
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 150 RNSTLTSILKDSLGGNGITSMIAVVSMDRYNQHQTLATLK 189
ST +L+ L + +++ D + LK
Sbjct: 92 GKSTTARVLQALLSRWPEHRRVELITTDGF--LHPNQVLK 129
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.0 bits (56), Expect = 2.9
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 62 LIVTGNENKVTAVTKMNAQSSRSHTICTIYFGAVAKLHLVDLAGSEQLFSLSDNY 116
L+V + A T ++ G KL + D AG E+ S++ Y
Sbjct: 22 LLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAY 76
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.9 bits (56), Expect = 3.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 85 HTICTIYFGAVAKLHLVDLAGSEQLFSLSDNYL 117
G KL + D AG E+ +++ Y
Sbjct: 40 KIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.369
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,613
Number of extensions: 30110
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 13
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)