RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7233
(383 letters)
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 356 bits (916), Expect = e-123
Identities = 106/312 (33%), Positives = 159/312 (50%), Gaps = 21/312 (6%)
Query: 75 MKLINLSELSGDKQKDFLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVT 134
M L L G +D L VL DCDGVLW + GA +++ L GK +V+
Sbjct: 1 MSLARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS 60
Query: 135 NNSTKTREQLIVKLKHLGFNA-EPNEIIGTAYLAAQYLKKHL----DPKKKAYIVGSSGI 189
NNS + R +L ++ LGF ++ +A AA+ L++ L D +++G G+
Sbjct: 61 NNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGL 120
Query: 190 ADELNLAGIENFGVGPDVMIPGRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACY 249
EL AG+ G P P V AV+VG+D H SF KL +A +
Sbjct: 121 RAELRAAGLRLAG-DPS------------AGDGAAPRVRAVLVGYDEHFSFAKLREACAH 167
Query: 250 LTNPNTLFVATNTDESFPMGPHVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEK 309
L +P L VAT+ D P+ PGTGS+ AAV+T + R+ +V+GKPS + + E
Sbjct: 168 LRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITEN 227
Query: 310 YNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADY 369
++++P RTLM+GDR TDI G+ G T+L LTG + +E+A A+ + + Y
Sbjct: 228 FSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLV---PHY 284
Query: 370 YLSSLGDMLPFL 381
Y+ S+ D+ L
Sbjct: 285 YVESIADLTEGL 296
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 319 bits (820), Expect = e-109
Identities = 66/298 (22%), Positives = 118/298 (39%), Gaps = 25/298 (8%)
Query: 83 LSGDKQKDFLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTRE 142
+ + K L + + D GVL N L+ G + + LK+ G+ + VTN+++++ E
Sbjct: 2 MQIESFKSLLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPE 61
Query: 143 QLIVKLKHLGF-NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENF 201
QL LG + ++II + + +Y+ + +G++ A+ L GI+
Sbjct: 62 QLADSYHKLGLFSITADKIISSGMITKEYIDLKV-DGGIVAYLGTANSANYLVSDGIKML 120
Query: 202 GVGPDVMIPGRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLM-KAACYLTNPNTLFVAT 260
V V A+V+ D ++ + K L +
Sbjct: 121 PVSAIDDSN-------------IGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVA 167
Query: 261 NTDESFPMGPHVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIG----SYLIEKYNLNPER 316
NTD ++P+ G + +++ R + GKP + L +K ++
Sbjct: 168 NTDNTYPLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQKMEISKRE 227
Query: 317 TLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSL 374
LM+GD +TDI G G T LVLTG+T ++ A KS + S
Sbjct: 228 ILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVP-----THICESA 280
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 311 bits (799), Expect = e-106
Identities = 77/290 (26%), Positives = 120/290 (41%), Gaps = 34/290 (11%)
Query: 92 LNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHL 151
L ++ L D DG ++ E I A + + +LK G +VTNNS++T +Q+ KL
Sbjct: 3 LKTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSF 62
Query: 152 GFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPG 211
A ++ T+ AQ++ + Y++G GI + G+ G D
Sbjct: 63 DIPATEEQVFTTSMATAQHIAQQK-KDASVYVIGEEGIRQAIEENGLTFGGENAD----- 116
Query: 212 RDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPH 271
VVVG D I++ K + N F++TN D + P
Sbjct: 117 -----------------FVVVGIDRSITYEKFAVGCLAIRN-GARFISTNGDIAIPT-ER 157
Query: 272 VTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLG 331
+PG GS+ + + +PV IGKP +I + + TLM+GD TDI G
Sbjct: 158 GLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAG 217
Query: 332 YNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
N G TLLV TG T E + + SL + +P++
Sbjct: 218 INAGMDTLLVHTGVTKR---------EHMTDDMEKPTHAIDSLTEWIPYI 258
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genom riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii}
Length = 263
Score = 310 bits (797), Expect = e-105
Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 27/288 (9%)
Query: 96 DTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFNA 155
++ D DGVL+ N I G +++ LK G ++TNNSTKT E KL +G +
Sbjct: 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV 61
Query: 156 EPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRDLK 215
+ II + Y+ KHL K +++G G+ E+ G +
Sbjct: 62 SSSIIITSGLATRLYMSKHL-DPGKIFVIGGEGLVKEMQALGWGIVTLDEA--------- 111
Query: 216 TDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVTVP 275
+ V VVVG D +++ KL A + N F+ TN D + P P
Sbjct: 112 ----RQGSWKEVKHVVVGLDPDLTYEKLKYATLAIRN-GATFIGTNPDATLPG-EEGIYP 165
Query: 276 GTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNG 335
G GS++AA+K EP++IGKP++ + + E E M+GDR +TDI G
Sbjct: 166 GAGSIIAALKVATNVEPIIIGKPNEPMYEVVREM--FPGEELWMVGDRLDTDIAFAKKFG 223
Query: 336 FQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFLSS 383
+ ++VLTG +++ ED + D L S+ +++ +L +
Sbjct: 224 MKAIMVLTGVSSL---------EDIKKSEYKPDLVLPSVYELIDYLKT 262
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 310 bits (797), Expect = e-105
Identities = 73/297 (24%), Positives = 142/297 (47%), Gaps = 35/297 (11%)
Query: 86 DKQKDFLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLI 145
L+ + + D DG +L++ L+ G+ + + +LK K+ + TNNS+ + +
Sbjct: 8 HHHHHVLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYV 67
Query: 146 VKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGP 205
KL+++G + + ++ + + A+++ K + + +++G+ + G
Sbjct: 68 RKLRNMGVDVPDDAVVTSGEITAEHMLKRF-GRCRIFLLGTPQLKKVFEAYGHV------ 120
Query: 206 DVMIPGRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDES 265
+ + VV+GFD +++ +L KA L ++AT+ D +
Sbjct: 121 ----------------IDEENPDFVVLGFDKTLTYERLKKACILLRKG-KFYIATHPDIN 163
Query: 266 FPMGPHVTVPGTGSMVAAVKTGAQREP-VVIGKPSKLIGSYLIEKYNLNPERTLMIGDRG 324
P VP GS++AA++ R+P ++ GKP+ L+ + EK+ + ER M+GDR
Sbjct: 164 CPS-KEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRL 222
Query: 325 NTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
TD++LG N G ++LVLTG+TT ED E D+ +LG++ +
Sbjct: 223 YTDVKLGKNAGIVSILVLTGETTP---------EDLERAETKPDFVFKNLGELAKAV 270
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus}
Length = 268
Score = 307 bits (789), Expect = e-104
Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 30/293 (10%)
Query: 90 DFLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLK 149
+ + D DGV+ I + + LK LGKKI +V+NNST++R L+ +L+
Sbjct: 3 AMMPDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLR 62
Query: 150 HLGFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMI 209
G +EI+ Y A+++ + P K + G G+ +EL LAG+E
Sbjct: 63 SFGLEVGEDEILVATYATARFIARE-KPNAKVFTTGEEGLIEELRLAGLEIVD------- 114
Query: 210 PGRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMG 269
+VVG + I+F + KA ++ATN D FP
Sbjct: 115 --------------YDEAEYLVVGSNRKINFELMTKALRACLR-GIRYIATNPDRIFPA- 158
Query: 270 PHVTVPGTGSMVAAVKTGAQREP-VVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDI 328
+PGTG ++ A+ REP VV+GKPS++I ++ L+ + ++GD+ + D+
Sbjct: 159 EDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDV 218
Query: 329 RLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
G G +T+LVLTG TT E + DY +SL DM+ L
Sbjct: 219 AAGKAIGAETVLVLTGVTTRENLDQMIERHG-----LKPDYVFNSLKDMVEAL 266
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydro PSI-2; 1.55A
{Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 298 bits (765), Expect = e-100
Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 34/283 (12%)
Query: 94 SFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
++ L D DG ++ I ++ + L+ G VTNN+T+T E + L+
Sbjct: 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNV 63
Query: 154 NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRD 213
I Y+ + K AY++G G+ + AG
Sbjct: 64 ETPLETIYTATMATVDYMNDM-NRGKTAYVIGEEGLKKAIADAGYV-------------- 108
Query: 214 LKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVT 273
+ VVVG D ++++ KL A + N LF+ TN D + P
Sbjct: 109 --------EDTKNPAYVVVGLDWNVTYDKLATATLAIQN-GALFIGTNPDLNIPT-ERGL 158
Query: 274 VPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYN 333
+PG GS+ A ++ + +PV IGKP+ +I + +E N+ + +M+GD TDI G N
Sbjct: 159 LPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGIN 218
Query: 334 NGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGD 376
N TLLV TG TT+ E+ Y L+SL +
Sbjct: 219 NDIDTLLVTTGFTTV---------EEVPDLPIQPSYVLASLDE 252
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 296 bits (761), Expect = e-100
Identities = 76/286 (26%), Positives = 122/286 (42%), Gaps = 35/286 (12%)
Query: 95 FDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKL-KHLGF 153
+ L D DG ++L E I + + L+ +VTNN+TK+ E + +L
Sbjct: 5 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 64
Query: 154 NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRD 213
+ + + Y+K+ + KK +++G +G+ D + AG E PD
Sbjct: 65 HVPASLVYTATLATIDYMKEA-NRGKKVFVIGEAGLIDLILEAGFEWDETNPD------- 116
Query: 214 LKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVT 273
VVVG D+ +S+ K++ A + LF+ TN D++ P
Sbjct: 117 ---------------YVVVGLDTELSYEKVVLATLAIQK-GALFIGTNPDKNIPT-ERGL 159
Query: 274 VPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYN 333
+PG GS+V V+T Q +PV IGKP +I I + E+ +M+GD TDI+ G
Sbjct: 160 LPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQ 219
Query: 334 NGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLP 379
NG +LLV +G T Y + SL +
Sbjct: 220 NGIDSLLVTSGFTPK---------SAVPTLPTPPTYVVDSLDEWTF 256
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 294 bits (756), Expect = 2e-99
Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 94 SFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
+ V+ D DGVL +N + GA + ++ + G + +TN ++T + L + G
Sbjct: 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61
Query: 154 NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRD 213
+ + +A A +L++ KKAY+VG + EL AG V PD
Sbjct: 62 DVPDSVFYTSAMATADFLRRQ--EGKKAYVVGEGALIHELYKAGFTITDVNPD------- 112
Query: 214 LKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVT 273
V+VG ++ + KAA ++ N F+ATN D
Sbjct: 113 ---------------FVIVGETRSYNWDMMHKAAYFVAN-GARFIATNPDTH----GRGF 152
Query: 274 VPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYN 333
P G++ A ++ + R+P +GKPS I + K + E T+++GD TDI G+
Sbjct: 153 YPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQ 212
Query: 334 NGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDM 377
G +T+LVL+G +++ +D + + S+ ++
Sbjct: 213 AGLETILVLSGVSSL---------DDIDSMPFRPSWIYPSVAEI 247
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 286 bits (735), Expect = 4e-96
Identities = 60/298 (20%), Positives = 106/298 (35%), Gaps = 43/298 (14%)
Query: 89 KDFLNSFDTVLTDCDGVLWLE----NELISGADQVMNSLKSLGKKIFYVTNNSTKTREQL 144
L VL D GVL+ I+G+ + + LK K+ + TN S +R +L
Sbjct: 6 GKRLAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAEL 65
Query: 145 IVKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVG 204
+ +L+ LGF+ E+ A A Q LK+ + Y++ G+ E + N
Sbjct: 66 VGQLQRLGFDISEQEVTAPAPAACQILKER---GLRPYLLIHDGVRSEFDQIDTSN---- 118
Query: 205 PDVMIPGRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPN-TLFVATNTD 263
P+ V+ S+ + A L + ++
Sbjct: 119 PNC---------------------VVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKG 157
Query: 264 ESFPMGPHVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDR 323
+ + G + A++ + V+GKPS ++ + + +MIGD
Sbjct: 158 RYYAA-TSGLMLDVGPYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAVMIGDD 216
Query: 324 GNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
D+ G + L V TG DE + AD Y+ +L + + L
Sbjct: 217 IVGDVGGAQRCGMRALQVRTGKFRP---------SDEHHPEVKADGYVDNLAEAVDLL 265
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 255 bits (653), Expect = 7e-84
Identities = 56/291 (19%), Positives = 104/291 (35%), Gaps = 41/291 (14%)
Query: 92 LNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHL 151
+ VL D +G L +E+ + GA + + L++ + +VTN + +T++ L+ +LK L
Sbjct: 4 RRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKL 63
Query: 152 GFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPG 211
F +EI + A +++ + ++ + + +
Sbjct: 64 EFEISEDEIFTSLTAARNLIEQK--QVRPMLLLDDRALPEFTGVQ--------------- 106
Query: 212 RDLKTDHEKLNLDPHVGAVVVGFD-SHISFPKLMKAACYLTNPNTLFVATNTDESFPMGP 270
AVV+G H + L +A L + +A + +
Sbjct: 107 ------------TQDPNAVVIGLAPEHFHYQLLNQAFRLLLD-GAPLIAIHKARYYKR-K 152
Query: 271 HVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRL 330
G G V A++ + +V+GKP K + + PE +MIGD D+
Sbjct: 153 DGLALGPGPFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDG 212
Query: 331 GYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
N G +LV TG DEE + S + +
Sbjct: 213 AQNIGMLGILVKTGKYKA---------ADEEKINPPPYLTCESFPHAVDHI 254
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomi protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
PDB: 3rf6_A*
Length = 352
Score = 176 bits (447), Expect = 4e-52
Identities = 54/341 (15%), Positives = 99/341 (29%), Gaps = 76/341 (22%)
Query: 98 VLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKL-KHLGFNAE 156
D DGVL+ + I+GA + L +TN + + L +
Sbjct: 16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75
Query: 157 PNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRDLK- 215
P +II + + K+ + VG+ + G ++ D++ RD+
Sbjct: 76 PLQIIQSHTPYKSLVNKY----SRILAVGTPSVRGVAEGYGFQDVVHQTDIVRYNRDIAP 131
Query: 216 ----TDHEKLN--------LDPHVGAVVVGFDSHISFPKL---------------MKAAC 248
+D + + AV+V D H +
Sbjct: 132 FSGLSDEQVMEYSRDIPDLTTKKFDAVLVFNDPHDWAADIQIISDAINSENGMLNTLRNE 191
Query: 249 YLTNPNTLFVATNTDESFPMGPHVTVPGTGSMVAAVK------TGAQREPVVIGKPSKLI 302
P+ +N D + + G G+ V+ G + +GKP+KL
Sbjct: 192 KSGKPSIPIYFSNQDLLWANPYKLNRFGQGAFRLLVRRLYLELNGEPLQDYTLGKPTKLT 251
Query: 303 GSY---------------------------LIEKYNLNPERTLMIGDRGNTDIRLGYNNG 335
+ + M+GD +DI N G
Sbjct: 252 YDFAHHVLIDWEKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYG 311
Query: 336 FQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGD 376
+ + LV TG E ++ K ++ + D
Sbjct: 312 WNSCLVKTGVYN----------EGDDLKECKPTLIVNDVFD 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 67/428 (15%), Positives = 119/428 (27%), Gaps = 108/428 (25%)
Query: 3 LERSTLSLEAV--------RTNISNLILVCMCLKTTFLLIPPKNQICLWEKL--EKLQEL 52
+ +S LS E + + + + + K + + +K E L+
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-------QEEMV---QKFVEEVLR-- 88
Query: 53 QQY-FCHKFIALKCIVATSQTTVMKLINLSELSGDKQ---KDFLNSFDTVLTDCDGVLWL 108
Y F I + S T M + L D Q K ++ L +L L
Sbjct: 89 INYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 109 ENE---LISG---------ADQVMNSLKSLGK---KIFYVTNNSTKTREQLIVKLKHLGF 153
LI G A V S K K KIF++ + + E ++ L+ L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 154 NAEPN-----EIIGTAYLAAQYLKKHLD------PKKKAYIVGSSGIADELNLAGIENFG 202
+PN + L ++ L P + +V + + N F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAFN 263
Query: 203 VGPDVMIPGRDLK-TDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTL-FVAT 260
+ +++ R + TD + +HIS LT +
Sbjct: 264 LSCKILLTTRFKQVTD-----------FLSAATTTHISLDHHSMT---LTPDEVKSLLLK 309
Query: 261 NTDESFPMGPHVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMI 320
D P + T P + +I + + + +
Sbjct: 310 YLDCRPQDLPR----------EVLTTN----PRRLS----IIAESIRDGLATW-DNWKHV 350
Query: 321 G-DRGNTDIRLGYNN--------GFQTLLVLTGDT-----TMEKAIAWSKSEDEEYKSRV 366
D+ T I N F L V + + W + V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVV 408
Query: 367 ADYYLSSL 374
+ SL
Sbjct: 409 NKLHKYSL 416
Score = 44.5 bits (104), Expect = 4e-05
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 41/158 (25%)
Query: 41 CLWEKLEKLQELQQYFCHKFIALKCIVATSQTTVMKLINLSELSGDKQKDFLNSFDTVLT 100
+ + L QYF I +K I E + FL+ F
Sbjct: 460 DSDDLI--PPYLDQYFYS-HIGHH----------LKNIEHPERMTLFRMVFLD-FR---- 501
Query: 101 DCDGVLWLENELI------SGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFN 154
+LE ++ + + ++N+L+ L Y+ +N E+L+ +
Sbjct: 502 ------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPK 554
Query: 155 AEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADE 192
E N I K+ D + A + I +E
Sbjct: 555 IEENLICS----------KYTDLLRIALMAEDEAIFEE 582
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 51.0 bits (122), Expect = 9e-08
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 287 GAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDT 346
++ +P + KP K I + + ++ +M+G+ +DI G + + +
Sbjct: 87 NSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEV 146
Query: 347 TMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
++ + + + L+ + + L L
Sbjct: 147 CLQDERLPLVAPPFV----IPVWDLADVPEALLLL 177
Score = 33.6 bits (77), Expect = 0.050
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 106 LWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLG 152
+ E L A + + +K LG K ++N +T E + L + G
Sbjct: 29 TYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFG 75
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 50.5 bits (121), Expect = 2e-07
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAW 354
+ KP I ++ +N+ PE LM+GDR +DI G +T+ G
Sbjct: 148 VKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGK--------- 198
Query: 355 SKSEDEEYKSRVADYYLSSLGDMLPFLS 382
SE E + ADY + +L +L L+
Sbjct: 199 -HSERELEYRKYADYEIDNLESLLEVLA 225
Score = 31.2 bits (71), Expect = 0.40
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 89 KDFLNSFDTVLTDCDGVLWLEN-----ELISGADQVMNSLKSLGKKIFYVTNNSTKTREQ 143
+ ++ + + + GA +V+ LK LG ++ +T+ +
Sbjct: 67 RRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITD---GNPVK 123
Query: 144 LIVKLKHLGFN 154
K+ L +
Sbjct: 124 QWEKILRLELD 134
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 48.1 bits (115), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
E KP I ++K + E + +GD D N G ++L+ E
Sbjct: 149 EEAGFFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREF 208
Query: 351 AIAWSKSEDEEYKSRVADYYLSSLGDMLPFLSS 383
D+ +S L +++ +
Sbjct: 209 WDK-------------CDFIVSDLREVIKIVDE 228
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 47.6 bits (114), Expect = 1e-06
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 255 TLFVATNTDESFPMGPHVTVP-----GTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEK 309
F+ T+ + G S + T + + KPS +YL++K
Sbjct: 103 QQFIYTHK-------GNNAFTILKDLGVESYFTEILTS---QSGFVRKPSPEAATYLLDK 152
Query: 310 YNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTG 344
Y LN + T IGDR D+ N+G Q++ L
Sbjct: 153 YQLNSDNTYYIGDRTL-DVEFAQNSGIQSINFLES 186
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 47.6 bits (114), Expect = 2e-06
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 18/88 (20%)
Query: 297 KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAW-- 354
+ + Y +E N+ + +MIGDR D+ N ++ V +
Sbjct: 142 STKEDVIRYAMESLNIKSDDAIMIGDREY-DVIGALKNNLPSIGVT-----------YGF 189
Query: 355 -SKSEDEEYKSRVADYYLSSLGDMLPFL 381
S E + A+Y ++S+ ++ +
Sbjct: 190 GSYEELKNAG---ANYIVNSVDELHKKI 214
Score = 26.8 bits (60), Expect = 9.9
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 107 WLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
EN++ G + +++SLK G + T+ K L+H
Sbjct: 82 MFENKVYDGIEALLSSLKDYGFHLVVATS---KPTVFSKQILEHFKL 125
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 45.3 bits (108), Expect = 6e-06
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 306 LIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSR 365
+ +Y+++ +GD D++ G LV TG + +
Sbjct: 110 IARRYDVDLAGVPAVGDSL-RDLQAAAQAGCAPWLVQTG---------NGRKTLAQGGLP 159
Query: 366 VADYYLSSLGD 376
L
Sbjct: 160 EGTRVCEDLAA 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 60/301 (19%), Positives = 95/301 (31%), Gaps = 125/301 (41%)
Query: 46 LEKLQELQQ-YFCHKFIALKCIVATSQTTVMKLINLSELSGDKQKDFLNSFDTVLTDCDG 104
E+L++L Q Y H + I +++T L L + D +K F + +L
Sbjct: 170 FEELRDLYQTY--HVLVG-DLIKFSAET----LSELIRTTLDAEKVFTQGLN-ILE---- 217
Query: 105 VLWLENELISGADQVMN----SLKSLGKKIFYVTNNSTKTREQL---IVKLKHLGFNAEP 157
WLEN + + S +G V QL +V K LGF P
Sbjct: 218 --WLENPSNTPDKDYLLSIPISCPLIG-----VI--------QLAHYVVTAKLLGFT--P 260
Query: 158 NEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRDLKTD 217
E+ ++Y+ G++G + G+
Sbjct: 261 GEL-------------------RSYLKGATGHS-----QGL------------------- 277
Query: 218 HEKLNLDPHVGAVVVGF-DSHISFPKLMKAA----------CYLTNPNTLFVATNTDESF 266
V AV + DS SF ++ A CY PNT + ++S
Sbjct: 278 ---------VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 267 --------PM----G-------PHVT-----VPGTGSMVAAVKTGAQREPVVIGKPSKLI 302
PM +V +P + ++ GA + VV G P L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLY 387
Query: 303 G 303
G
Sbjct: 388 G 388
Score = 39.3 bits (91), Expect = 0.002
Identities = 57/316 (18%), Positives = 92/316 (29%), Gaps = 115/316 (36%)
Query: 43 WEKLEKL--QELQQYFCHKFIALKCIVATSQTTVMKLINLSELSGDKQKDFLNSFDTVLT 100
WE + + F FI ++C A T+ L ++L
Sbjct: 289 WESFFVSVRKAITVLF---FIGVRCYEAYPNTS------LPP--------------SILE 325
Query: 101 DCDGVLWLENE--------LISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLG 152
D LEN IS Q + + + TN+ +Q+ + L
Sbjct: 326 DS-----LENNEGVPSPMLSISNLTQ-----EQVQDYVNK-TNSHLPAGKQVEISL---- 370
Query: 153 FNAEPNEII-GTA---YLAAQYLKK-----HLD----P--KKKAYIVG----------SS 187
N N ++ G Y L+K LD P ++K S
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 188 --GIADELNLAGIENFGV---GPDVMIP------GRDLKTDHEKLNLDPHVGAVVVGFDS 236
A +L + V D+ IP G DL+ + + V ++
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIR---L 486
Query: 237 HISFPKLMKAACYLTNPNTLFVATNT-DESFPMGPHVTVPGTGSMVAAVK--TGAQREPV 293
+ + + F AT+ D F GP G G + K TG + V
Sbjct: 487 PVKWETTTQ-----------FKATHILD--F--GPG-GASGLGVLTHRNKDGTGVR---V 527
Query: 294 VIG-----KPSKLIGS 304
++ P G
Sbjct: 528 IVAGTLDINPDDDYGF 543
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 45.5 bits (108), Expect = 1e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
E + + KP I + + +LMIGD DI + G
Sbjct: 156 EDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQA----------- 204
Query: 351 AIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
+ + Y++ SL +++ L
Sbjct: 205 ---FYNVTERTVFPFQPTYHIHSLKELMNLL 232
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 44.8 bits (106), Expect = 2e-05
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAW 354
KP I + ++ P +GD D + G + LV+
Sbjct: 159 WPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQAL------- 211
Query: 355 SKSEDEEYKSRVADYYLSSLGDMLPFLSS 383
+ S ++ L SL +LP L
Sbjct: 212 ---DPVVRDSVPKEHILPSLAHLLPALDC 237
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 44.4 bits (106), Expect = 2e-05
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
++ + L PE+ ++IGD D+ G Q L + G +++ Y+
Sbjct: 145 QALQTHQLAPEQAIIIGDTKF-DMLGARETGIQKLAITWG--------FGEQADLLNYQ- 194
Query: 365 RVADYYLSSLGDMLPFL 381
DY ++L +
Sbjct: 195 --PDYIAHKPLEVLAYF 209
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 45.2 bits (106), Expect = 2e-05
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 308 EKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVA 367
+ +N + ++GD D+ G + LTG K E ++ A
Sbjct: 309 QDNIVNKDDVFIVGDSLA-DLLSAQKIGATFIGTLTG--------LKGKDAAGELEAHHA 359
Query: 368 DYYLSSLGDMLPFLSS 383
DY ++ LG++ L +
Sbjct: 360 DYVINHLGELRGVLDN 375
Score = 30.5 bits (68), Expect = 0.98
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 19/136 (13%)
Query: 97 TVLTDCDGVL----------------WLENELISGADQVMNSLKSLGKKIFYVTNNSTKT 140
+L D DGV L ++ G ++ I + N +
Sbjct: 3 KILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQK 62
Query: 141 REQLIVKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADEL--NLAGI 198
++++ KLK LG N+ + + + + K L + + + N++
Sbjct: 63 -DKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTN 121
Query: 199 ENFGVGPDVMIPGRDL 214
+ +P + L
Sbjct: 122 LADCFNLNEQLPLQFL 137
Score = 27.5 bits (60), Expect = 9.3
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 115 GADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLG 152
++N LK G ++ T + + +V ++LG
Sbjct: 219 EVKVLLNDLKGAGFELGIATG---RPYTETVVPFENLG 253
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 44.2 bits (105), Expect = 2e-05
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 306 LIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIA 353
++ L+ +R+L++GD+ D++ G G ++ G+ ++ A
Sbjct: 146 AGKRLALDLQRSLIVGDKL-ADMQAGKRAGLAQGWLVDGEAAVQPGFA 192
Score = 27.3 bits (61), Expect = 8.2
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 87 KQKDFLNSFDTVLTDCDGVL---------WLENELISGADQVMNSLKSLGKKIFYVTN 135
+ F + D DG + E L + + G + VTN
Sbjct: 23 GGRVFPPHLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTN 80
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 43.6 bits (103), Expect = 4e-05
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLV 341
+ V+ KP K + ++ + + PE +L IGD D + G + +
Sbjct: 152 DEVLSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWI 202
Score = 30.5 bits (69), Expect = 0.81
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 109 ENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFN 154
E+ ++ G + + +K G K + N + L+ G
Sbjct: 97 ESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLM 142
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 43.1 bits (101), Expect = 6e-05
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 293 VVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAI 352
V+ + + ++ +++L ER +MIG+ +D+ G + T
Sbjct: 158 EVVSEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVT------ 211
Query: 353 AWSKSEDEEYKSRVADYY-LSSLGDMLPFLSS 383
W+ +D + + + +
Sbjct: 212 -WAHEQDHGVAADEPRLREVPDPSGWPAAVRA 242
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 42.7 bits (101), Expect = 7e-05
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 311 NLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYY 370
N +P + ++IGD + DIR +++ V TG+ TME+
Sbjct: 167 NYSPSQIVIIGDTEH-DIRCARELDARSIAVATGNFTMEELARHK-----------PGTL 214
Query: 371 LSSLGDMLPFLSS 383
+ + L+S
Sbjct: 215 FKNFAETDEVLAS 227
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 42.5 bits (101), Expect = 8e-05
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 19/96 (19%)
Query: 293 VVIG-------KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGD 345
++IG KP I++ PE L IGD D G V +G
Sbjct: 134 IIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTV-DAGTAAAAGVSFTGVTSGM 192
Query: 346 TTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
TT ++ A+ D +S+LG ++
Sbjct: 193 TTAQEFQAYP-----------YDRIISTLGQLISVP 217
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 297 KPSKLIGSYLIEKYNL-NPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWS 355
+ Y+++ N+ + ++ +M+GDR DI G ++ VL G + E
Sbjct: 166 VNKNEVIQYVLDLCNVKDKDKVIMVGDR-KYDIIGAKKIGIDSIGVLYGYGSFE------ 218
Query: 356 KSEDEEYKSRVADYYLSSLGDMLPFL 381
E E + Y + ++ + L
Sbjct: 219 --EISESE---PTYIVENVESIKDIL 239
Score = 28.7 bits (65), Expect = 2.8
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 107 WLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
EN++ +++ L GK + T+ K L++
Sbjct: 106 IFENKIYENMKEILEMLYKNGKILLVATS---KPTVFAETILRYFDI 149
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 41.0 bits (97), Expect = 2e-04
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 297 KP-SKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTT 347
KP KL+ Y + + ++ + +IGDR TDI+L N G L
Sbjct: 116 KPKVKLVERY-LAEQAMDRANSYVIGDR-ATDIQLAENMGINGLRYDRETLN 165
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD
superfamily, ST genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides thetaiotaomicron}
Length = 234
Score = 41.4 bits (97), Expect = 2e-04
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 291 EPVVIG--KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTM 348
+ + + K K L+ + P LM+G+ +DI+ + G + +
Sbjct: 150 DHIEVMSDKTEKEY-LRLLSILQIAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFEVM-- 206
Query: 349 EKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
W E + + L D+L L
Sbjct: 207 -----WKHEVTETFAHE-RLKQVKRLDDLLSLL 233
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 41.1 bits (97), Expect = 2e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 306 LIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQT-LLVLTGDTTMEKAIAWSKSEDEEYKS 364
+ +++ + M+GD+ D++ T +LV TG K E ++
Sbjct: 140 ARDYLHIDMAASYMVGDKL-EDMQAAVAANVGTKVLVRTG-----------KPITPEAEN 187
Query: 365 RVADYYLSSLGDMLPFL 381
AD+ L+SL D+ +
Sbjct: 188 A-ADWVLNSLADLPQAI 203
Score = 27.3 bits (61), Expect = 7.9
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 86 DKQKDFLNSFDTVLTDCDGVL---------WLENELISGADQVMNSLKSLGKKIFYVTN 135
+ S + D DG + E I G M LK +G + VTN
Sbjct: 16 PRGSHMAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTN 74
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 41.3 bits (97), Expect = 2e-04
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAW 354
KP+ I + + + P +M+GD TDI+ G N G KA W
Sbjct: 174 EEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGL-------------KATVW 220
Query: 355 --SKSEDEEYKSRVADYYLSSLGDMLPFLSS 383
S + Y +SS+ ++ L S
Sbjct: 221 INKSGRVPLTSSPMPHYMVSSVLELPALLQS 251
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 39.2 bits (92), Expect = 0.001
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 293 VVIG-------KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGD 345
+G KP+ + S ++ + ++ + IGD DI+ N+ + V G
Sbjct: 154 FALGEKSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDS-EIDIQTARNSEMDEIAVNWGF 212
Query: 346 TTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
++ A + + + +
Sbjct: 213 RSVPFLQKHG-----------ATVIVDTAEKLEEAI 237
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 38.1 bits (89), Expect = 0.002
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
+ KP+ + + + PE +M+ DR +++ G + + E
Sbjct: 139 VMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQ-NVQAARAVGMHAVQCVDAAQLRE 192
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 295 IGKPSKLIGSYLIEKY-NLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIA 353
KP K +Y+ E+ + E TL+IGD DI+ G G T + I
Sbjct: 156 FQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEI- 214
Query: 354 WSKSEDEEYKSRVADYYLSSLGDMLPFLS 382
+ Y + L ++ L+
Sbjct: 215 ------------IPTYEIRKLEELYHILN 231
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 37.5 bits (88), Expect = 0.002
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
YL EK L+IGDR DI G G T L + +
Sbjct: 145 YLREK--YQISSGLVIGDRPI-DIEAGQAAGLDTHLFTSIVNLRQ 186
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 37.6 bits (88), Expect = 0.003
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
L E ++++P R +M+GD D+ G G +T+LV D
Sbjct: 135 KLAEAWDVSPSRMVMVGDYRF-DLDCGRAAGTRTVLVNLPDNPWP--------------- 178
Query: 365 RVADYYLSSLGDMLPFLSS 383
+ D++ + LS+
Sbjct: 179 ELTDWHARDCAQLRDLLSA 197
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 36.5 bits (85), Expect = 0.008
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 25/103 (24%)
Query: 285 KTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTG 344
G+ +E S + L + IGD GY
Sbjct: 135 SDGSFKELDNSNGACDSKLSAFDKAKGLIDGEVIAIGD--------GYT----------- 175
Query: 345 DTTMEKA------IAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
D + + IA+ + + E ++ Y ++ ++ +
Sbjct: 176 DYQLYEKGYATKFIAYMEHIEREKVINLSKYVARNVAELASLI 218
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase
superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A
{Pseudomonas}
Length = 240
Score = 36.3 bits (84), Expect = 0.009
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 297 KPSKLIGSYLIE---KYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIA 353
KP+ +Y+I+ K + + L + D + G + +
Sbjct: 152 KPNPNNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGAT 211
Query: 354 WSKSEDEEYKSRVADYYLSSLGDM 377
S D+ +S+G+M
Sbjct: 212 HVPSRMPNV-----DFRFNSMGEM 230
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 36.4 bits (85), Expect = 0.009
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
+E PE+ L++GD + DI G G +T L L W +
Sbjct: 147 KTLEILGEEPEKALIVGD-TDADIEAGKRAGTKTALAL-----------WGYVKLNSQI- 193
Query: 365 RVADYYLSSLGDMLPFLSS 383
D+ LS D++ + +
Sbjct: 194 --PDFTLSRPSDLVKLMDN 210
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 36.0 bits (84), Expect = 0.011
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
YL K+ L P++ L +GD DI ++ G + + G
Sbjct: 178 YLCGKFGLYPKQILFVGD-SQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSK--------- 227
Query: 365 RVADYYLSSLGDMLPFL 381
D+ D+L
Sbjct: 228 --PDWIFDDFADILKIT 242
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 35.7 bits (82), Expect = 0.015
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLV--------- 341
+ + KP + + E + P L + G D+ N GF V
Sbjct: 141 DAKRVFKPHPDSYALVEEVLGVTPAEVLFVSSNGF-DVGGAKNFGFSVARVARLSQEALA 199
Query: 342 --LTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFLSS 383
L T + + EE + D+ + +LGD+ +
Sbjct: 200 RELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDLPRLVRG 243
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 34.7 bits (80), Expect = 0.015
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
+ KP + + +L +++ D ++R G + D +
Sbjct: 72 VEKPEEAAFQAAADAIDLPMRDCVLVDDSI-LNVRGAVEAGLVGVYYQQFDRAVV 125
Score = 30.1 bits (68), Expect = 0.48
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 98 VLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFNAEP 157
++ D GVL +E ++ + K G ++N+ ++ L N
Sbjct: 5 LIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAA---PIRELETNGVV 61
Query: 158 NEII 161
++++
Sbjct: 62 DKVL 65
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 35.2 bits (82), Expect = 0.018
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
+EK N+ P+ L IGD +D + L + G + K
Sbjct: 146 TALEKVNVAPQNALFIGD-SVSDEQTAQAANVDFGLAVWG----------MDPNADHQK- 193
Query: 365 RVADYYLSSLGDMLPFL 381
+ D+L
Sbjct: 194 --VAHRFQKPLDILELF 208
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 35.0 bits (81), Expect = 0.024
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNP-ERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
KPS + N+ P + IGD + DI+ G + + + +
Sbjct: 153 GDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSIS-DIQSAIEAGCLPIKYGSTNIIKD 211
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ
hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP:
c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A
1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A*
1z88_A 2aut_A
Length = 211
Score = 34.8 bits (79), Expect = 0.025
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 113 ISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKL-KHLGFNAEPNEIIG------TAY 165
A Q+++ G IF+VT S E + L + A +
Sbjct: 90 KEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQN 149
Query: 166 LAAQYLKKH 174
+Q+L+
Sbjct: 150 TKSQWLQDK 158
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 34.4 bits (79), Expect = 0.039
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
+ KP I + E ++P+ T I D + ++ G T G+
Sbjct: 171 MAKPEPEIFKAVTEDAGIDPKETFFIDDSEI-NCKVAQELGISTYTPKAGEDWSH 224
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 33.9 bits (78), Expect = 0.055
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 20/87 (22%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAW 354
KP+ I + + K + +GD D + +L+
Sbjct: 148 AVKPNPKIFGFALAKV---GYPAVHVGDIYELDYIGAKRSYVDPILL------------- 191
Query: 355 SKSEDEEYKSRVADYYLSSLGDMLPFL 381
D + +L + L +
Sbjct: 192 ----DRYDFYPDVRDRVKNLREALQKI 214
Score = 28.9 bits (65), Expect = 2.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 109 ENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
E L + + LKS G K+ V+N S + + L+
Sbjct: 93 EAFLYDDTLEFLEGLKSNGYKLALVSNASPRVKT----LLEKFDL 133
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 33.7 bits (77), Expect = 0.062
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
+ + I KP I + ++ +NP + D+ GF T
Sbjct: 155 DDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAW-DLGGAGKFGFNT------------ 201
Query: 351 AIAWS--KSEDEEYKSRVADYYLSSLGDMLPFLSS 383
+ EY+ + ++SL ++ P L+
Sbjct: 202 --VRINRQGNPPEYEFAPLKHQVNSLSELWPLLAK 234
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 33.7 bits (77), Expect = 0.063
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 17/95 (17%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
+PV + KP + + L+ L + D GF T
Sbjct: 145 DPVQVYKPDNRVYELAEQALGLDRSAILFVASNAW-DATGARYFGFPT------------ 191
Query: 351 AIAWS--KSEDEEYKSRVADYYLSSLGDMLPFLSS 383
W E + D+ ++SL ++ +
Sbjct: 192 --CWINRTGNVFEEMGQTPDWEVTSLRAVVELFET 224
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 33.2 bits (76), Expect = 0.097
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 295 IGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
KP++ I +I + PE TL I D ++ GF T G+ +
Sbjct: 148 KYKPNEDIFLEMIADSGMKPEETLFIDDGP-ANVATAERLGFHTYCPDNGENWIP 201
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 32.5 bits (73), Expect = 0.19
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 297 KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSK 356
KP +++ L D +I G G +T + L + +
Sbjct: 204 KPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVEN----------E 253
Query: 357 SEDEEYKSRVADYYLSSLGDM 377
+ ++ +S + ++
Sbjct: 254 VNEILGQTPEGAIVISDILEL 274
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.19
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 169 QYLKKHLDPKKKAYIVGSS-GIADELNLAGIE 199
Q LKK L K Y S+ +A + A +E
Sbjct: 20 QALKK-LQASLKLYADDSAPALA--IK-ATME 47
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 31.9 bits (73), Expect = 0.20
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 297 KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
KP I ++++ +P T+ D +I G ++LV T +
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNA-DNIEGANQLGITSILVKDKTTIPD 199
Score = 26.9 bits (60), Expect = 9.0
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 111 ELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHL 151
L +M+ L+ G ++ ++N + + +
Sbjct: 91 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEI 131
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 31.1 bits (71), Expect = 0.47
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 29/108 (26%)
Query: 114 SGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFNAEPNEIIGT----AYLAAQ 169
+ V+ + S G + V T E + +K+ + + L
Sbjct: 69 AQPSLVLTQIASSGVNVVTV--PGQTTPESVAMKINAVA------TALHQTEKGQKLIED 120
Query: 170 Y------LKKHLDPKKKAYI----------VGSSGIADEL-NLAGIEN 200
Y + K P K ++ G + AD + AG N
Sbjct: 121 YQQRLAAVNKTPLPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAGGSN 168
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 30.9 bits (70), Expect = 0.58
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 299 SKLIG-SYLIEKYNLNPERTLMIGDRGNTDI 328
K ++++EKYNLN ER + GD GN D+
Sbjct: 211 GKNEIVTFMLEKYNLNTERAIAFGDSGN-DV 240
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
TM0231, JCSG, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Length = 469
Score = 31.0 bits (71), Expect = 0.73
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 22/105 (20%)
Query: 89 KDFLNSFDTVLTDCDGVLWLE----NEL-ISGAD--QVMNSLKSLGKKIFYVTNNSTKTR 141
+ +F L D V+ E E +G + +SLKSLGK+ ++V +
Sbjct: 366 EREDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYFV-----EKL 420
Query: 142 EQLIVKLKHLGFNAEPNEII-----GTAYLAAQYLKKHLDPKKKA 181
+L + + N + G +++ + K +
Sbjct: 421 PELEKVI-----SVSENTVFLFVGAGDIIYSSRRFVERYQSSKSS 460
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 29.5 bits (67), Expect = 1.4
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 20/127 (15%)
Query: 258 VATNTDESFPMGPHVTVPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLI--EKYNLNPE 315
+AT+ ++ + T V GKP + +L +K +
Sbjct: 112 IATSGGIDT-ATINLKALKLDINKINIVTRDD---VSYGKPDPDL--FLAAAKKIGAPID 165
Query: 316 RTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLG 375
L+IGD D+ + +L+G + + A
Sbjct: 166 ECLVIGD-AIWDMLAARRCKATGVGLLSGGYDIGELERAG-----------ALRVYEDPL 213
Query: 376 DMLPFLS 382
D+L L
Sbjct: 214 DLLNHLD 220
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 29.2 bits (66), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 163 TAYLAAQYLKKHLDPK--KKAYIVGSSGIADE-----LNLAGIENFGVG 204
L + ++ L + I+ S G+ DE L AG E FGVG
Sbjct: 252 FEALIRE-VRWELALRGRSDIKIMVSGGL-DENTVKKLREAGAEAFGVG 298
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.6 bits (66), Expect = 2.3
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 28/141 (19%)
Query: 138 TKTREQLIVKLKHLGFNAEPNEIIGTAY-LAAQYLKKHLD------------------PK 178
T E L +GF N +I + Q+ + +
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSD 127
Query: 179 KKAYIVGSSGIADELNLAGIENF--GVGPDVMIPGRDLKTD-HEKLNLDPHVGAVVVGFD 235
+K + GI + ++ G + G DL + L + +G
Sbjct: 128 EKISQIEKLGIKVSEHKESLQKILHGYKKGT-LDGDDLVLEISNALEISSEMGLK----I 182
Query: 236 SHISFPKLMKAACYLTNPNTL 256
FP+ K +++ TL
Sbjct: 183 LEDVFPEF-KDLTAVSSKLTL 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 29.1 bits (66), Expect = 2.7
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 319 MIGDRGNT-DIRLGYNNGFQTL------LVLTGDTTMEKAIAWSKSEDEEYK 363
+I + ++ V G T++E+ + S+S +
Sbjct: 367 LIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRGSRSHHHHHH 418
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 3.9
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 28/141 (19%)
Query: 138 TKTREQLIVKLKHLGFNAEPNEIIGTAY-LAAQYLKKHLDPKKKAYIVGSS--------- 187
T E L +GF N +I + Q+ + + + + +
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSD 127
Query: 188 ---------GIADELNLAGIENF--GVGPDVMIPGRDLKTD-HEKLNLDPHVGAVVVGFD 235
GI + ++ G + G DL + L + +G
Sbjct: 128 EKISQIEKLGIKVSEHKESLQKILHGYKKGT-LDGDDLVLEISNALEISSEMGLK----I 182
Query: 236 SHISFPKLMKAACYLTNPNTL 256
FP+ K +++ TL
Sbjct: 183 LEDVFPEF-KDLTAVSSKLTL 202
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 28.0 bits (63), Expect = 4.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDI 328
YL + + P +TL+ GD GN DI
Sbjct: 169 YLQQHLAMEPSQTLVCGDSGN-DI 191
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 28.0 bits (61), Expect = 6.4
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 73 TVMKLINLSELSGDKQKDFLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFY 132
+++L G K+ + VLW+ L S M+ K+I
Sbjct: 115 RILELDQFKGQQGQKRFQDMMG-HGSDYSLSEVLWVCANLFSDVQFKMSH-----KRIML 168
Query: 133 VTNNSTKT------REQLIVKLKHL 151
TN + K L
Sbjct: 169 FTNEDNPHGNDSAKASRARTKAGDL 193
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 27.8 bits (61), Expect = 6.4
Identities = 4/49 (8%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 293 VVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLV 341
+ K + + + L + D + +V
Sbjct: 183 KIGHKVESESYRKIADSIGCSTNNILFLTDVTR-EASAAEEADVHVAVV 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.5 bits (61), Expect = 6.9
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 119 VMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDPK 178
+ + G+ +VT + L ++ G++ E E G + P
Sbjct: 51 IYKGAEEYGEPGVFVT--LEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108
Query: 179 KKAYIVGSSGIADEL 193
++ +++ D
Sbjct: 109 EEKFVLEDRFNVDNF 123
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 27.7 bits (62), Expect = 7.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 136 NSTKT-REQLIVKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDP 177
N+ KT + ++ K GF+ + A + LDP
Sbjct: 17 NTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDP 59
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia
coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Length = 105
Score = 26.0 bits (58), Expect = 9.0
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 4/18 (22%)
Query: 366 VADYYLSSLGD----MLP 379
ADYY +GD LP
Sbjct: 84 AADYYHHPIGDVLFHALP 101
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 27.1 bits (61), Expect = 9.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 272 VTVPGTGSMVAAVKTGAQRE 291
VT PG GS VA ++T A RE
Sbjct: 150 VTEPGAGSDVANLRTRAVRE 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,732,837
Number of extensions: 351569
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 103
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)