RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7233
(383 letters)
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga
maritima [TaxId: 2336]}
Length = 261
Score = 149 bits (375), Expect = 4e-43
Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 35/292 (11%)
Query: 91 FLNSFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKH 150
L+ + + D DG +L++ L+ G+ + + +LK K+ + TNNS+ + + KL++
Sbjct: 3 VLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRN 62
Query: 151 LGFNAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIP 210
+G + + ++ + + A+++ K + + +++G+ + G
Sbjct: 63 MGVDVPDDAVVTSGEITAEHMLKRF-GRCRIFLLGTPQLKKVFEAYGHVID--------- 112
Query: 211 GRDLKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGP 270
+ + VV+GFD +++ +L KA L ++AT+ D + P
Sbjct: 113 -------------EENPDFVVLGFDKTLTYERLKKACILL-RKGKFYIATHPDINCPSK- 157
Query: 271 HVTVPGTGSMVAAVKTGAQREPVVIGK-PSKLIGSYLIEKYNLNPERTLMIGDRGNTDIR 329
VP GS++AA++ R+P +I P+ L+ + EK+ + ER M+GDR TD++
Sbjct: 158 EGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVK 217
Query: 330 LGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDMLPFL 381
LG N G ++LVLTG+TT ED E D+ +LG++ +
Sbjct: 218 LGKNAGIVSILVLTGETT---------PEDLERAETKPDFVFKNLGELAKAV 260
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c
{Streptococcus mutans [TaxId: 1309]}
Length = 253
Score = 146 bits (368), Expect = 3e-42
Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 33/283 (11%)
Query: 94 SFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
++ L D DG ++ + I + + L+ VTNN+T+T E + L
Sbjct: 1 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFN 60
Query: 154 NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRD 213
P E I TA LA + K AY++G +G+ +
Sbjct: 61 IKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAV-------------------- 100
Query: 214 LKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVT 273
+ + VVVG D+++++ KL A + F+ TN D + P
Sbjct: 101 --AEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAV-FIGTNPDLNIPT-ERGL 156
Query: 274 VPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYN 333
+PG G+++ ++ + +P++IGKP +I + +++ + +M+GD TDI G
Sbjct: 157 LPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIK 216
Query: 334 NGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGD 376
N TLLV TG T K E+ D+ LSSL +
Sbjct: 217 NDIATLLVTTGFT---------KPEEVPALPIQPDFVLSSLAE 250
>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188
{Enterococcus faecalis [TaxId: 1351]}
Length = 253
Score = 134 bits (337), Expect = 1e-37
Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 33/282 (11%)
Query: 95 FDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGFN 154
+ L D DG ++L E I + + L+ +VTNN+TK+ E + +L +
Sbjct: 2 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 61
Query: 155 AEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRDL 214
P ++ TA LA K + KK +++G +G+ D + AG E PD
Sbjct: 62 HVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDY------- 114
Query: 215 KTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVTV 274
VVVG D+ +S+ K++ A + LF+ TN D++ P +
Sbjct: 115 ---------------VVVGLDTELSYEKVVLATLAI-QKGALFIGTNPDKNIPT-ERGLL 157
Query: 275 PGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNN 334
PG GS+V V+T Q +PV IGKP +I I + E+ +M+GD TDI+ G N
Sbjct: 158 PGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQN 217
Query: 335 GFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGD 376
G +LLV +G T Y + SL +
Sbjct: 218 GIDSLLVTSGFT---------PKSAVPTLPTPPTYVVDSLDE 250
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 127 bits (320), Expect = 2e-35
Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 38/284 (13%)
Query: 94 SFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKHLGF 153
+ V+ D DGVL +N + GA + ++ + G + +TN ++T + L + G
Sbjct: 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61
Query: 154 NAEPNEIIGTAYLAAQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRD 213
+ + +A A +L++ KKAY+VG + EL AG V PD +I G
Sbjct: 62 DVPDSVFYTSAMATADFLRRQ--EGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGET 119
Query: 214 LKTDHEKLNLDPHVGAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVT 273
+ + ++ Y F+ATN
Sbjct: 120 RSYNWDMMHKA-----------------------AYFVANGARFIATNP----DTHGRGF 152
Query: 274 VPGTGSMVAAVKTGAQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYN 333
P G++ A ++ + R+P +GKPS I + K + E T+++GD TDI G+
Sbjct: 153 YPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQ 212
Query: 334 NGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLSSLGDM 377
G +T+LVL+G ++ +D + + S+ ++
Sbjct: 213 AGLETILVLSGVSS---------LDDIDSMPFRPSWIYPSVAEI 247
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 245
Score = 44.0 bits (102), Expect = 1e-05
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLV-----------LTGDTTMEKAIA 353
+ E + P L + G D+ N GF V L T +
Sbjct: 155 LVEEVLGVTPAEVLFVSSNGF-DVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMF 213
Query: 354 WSKSEDEEYKSRVADYYLSSLGDMLPFL 381
+ EE + D+ + +LGD+ +
Sbjct: 214 KALRMREETYAEAPDFVVPALGDLPRLV 241
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 44.4 bits (104), Expect = 1e-05
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 306 LIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSR 365
+ +N + ++GD D+ G + LTG + A E ++
Sbjct: 307 NKQDNIVNKDDVFIVGDSLA-DLLSAQKIGATFIGTLTGLKGKDAA--------GELEAH 357
Query: 366 VADYYLSSLGDMLPFL 381
ADY ++ LG++ L
Sbjct: 358 HADYVINHLGELRGVL 373
Score = 30.2 bits (67), Expect = 0.42
Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 9/173 (5%)
Query: 85 GDKQKDFLNSFDTVLTDCDGVLWLENEL--ISGADQVMNSLKSLGKKIFYVTNNSTKTRE 142
G K + + T G ++ E L + ++N LK G ++ T
Sbjct: 187 GSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETV 246
Query: 143 QLIVKLKHLGFNAEPNEIIGTAYLAAQYLKKHLDPKKK------AYIVGSSGIADELNLA 196
L L + + L A+ + P K + + +
Sbjct: 247 VPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYI 306
Query: 197 GIENFGVGPDVMIPGRDLKTDHEKL-NLDPHVGAVVVGFDSHISFPKLMKAAC 248
++ V D + D D + + G + +L
Sbjct: 307 NKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHA 359
Score = 29.8 bits (66), Expect = 0.63
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 18/107 (16%)
Query: 97 TVLTDCDGVL------------WLENELIS----GADQVMNSLKSLGKKIFYVTNNSTKT 140
+L D DGV + L+ G ++ L N
Sbjct: 3 KILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWET-LTDNDIQDIRNRIFQ 61
Query: 141 REQLIVKLKHLGFNAEPNEI-IGTAYLAAQYLKKHLDPKKKAYIVGS 186
+++++ KLK LG N+ + + I + LKK + +A++
Sbjct: 62 KDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQD 108
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId:
562]}
Length = 218
Score = 39.0 bits (89), Expect = 5e-04
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
K ++P + + D N + ++++V + + +
Sbjct: 152 DCAAKLGVDPLTCVALEDSVN-GMIASKAARMRSIVVPAPEAQ------------NDPRF 198
Query: 365 RVADYYLSSLGDMLP 379
+A+ LSSL ++
Sbjct: 199 VLANVKLSSLTELTA 213
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 187
Score = 36.2 bits (82), Expect = 0.003
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 312 LNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTME 349
L+IGDR DI G G T L + +
Sbjct: 147 YQISSGLVIGDRPI-DIEAGQAAGLDTHLFTSIVNLRQ 183
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 35.9 bits (81), Expect = 0.004
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 20/77 (25%)
Query: 307 IEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRV 366
++KY LN + T IGDR D+ N+G Q++ L
Sbjct: 147 LDKYQLNSDNTYYIGDRTL-DVEFAQNSGIQSINFLESTYE------------------- 186
Query: 367 ADYYLSSLGDMLPFLSS 383
++ + +L D+ +
Sbjct: 187 GNHRIQALADISRIFET 203
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 35.7 bits (81), Expect = 0.004
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 297 KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIA 353
KP+ + ++ L+ +R+L++GD+ D++ G G ++ G+ ++ A
Sbjct: 129 KPNPGMLVEAGKRLALDLQRSLIVGDK-LADMQAGKRAGLAQGWLVDGEAAVQPGFA 184
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional
protein HisB, phosphatase domain {Escherichia coli
[TaxId: 562]}
Length = 161
Score = 35.2 bits (80), Expect = 0.005
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIA 353
+ + ++ + +IGDR TDI+L N G L I
Sbjct: 112 RYLAEQAMDRANSYVIGDR-ATDIQLAENMGINGLRYDRETLNW-PMIG 158
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 222
Score = 35.5 bits (80), Expect = 0.006
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
V + KP I ++L++ P + + D G+ +++ + G T+LV + + +
Sbjct: 151 CQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGS-NLKPARDMGMVTILVHNTASALRE 209
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 33.9 bits (77), Expect = 0.010
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 297 KPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGD 345
K + + + + L I DR + + G + V +GD
Sbjct: 101 KDDVVKEEIFWKHIAPHFDVKLAIDDR-TQVVEMWRRIGVECWQVASGD 148
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
[TaxId: 9606]}
Length = 253
Score = 33.6 bits (75), Expect = 0.025
Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVL 342
+ + K + + + L + D + +V+
Sbjct: 178 DTKIGHKVESESYRKIADSIGCSTNNILFLTDVTR-EASAAEEADVHVAVVV 228
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 32.9 bits (73), Expect = 0.048
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 307 IEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRV 366
+ + P +M+GD TDI+ G N G + + + S +
Sbjct: 174 CDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKS-----------GRVPLTSSPM 222
Query: 367 ADYYLSSLGDMLPFLSS 383
Y +SS+ ++ L S
Sbjct: 223 PHYMVSSVLELPALLQS 239
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 32.5 bits (72), Expect = 0.054
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 291 EPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEK 350
V + KP I +L++ +P + + D G +++ + G T+LV DT +++
Sbjct: 153 CQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGA-NLKPARDLGMVTILVQDTDTALKE 211
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 32.5 bits (72), Expect = 0.060
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 309 KYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVAD 368
K + E + +GD D N G ++L+ E D
Sbjct: 167 KAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDK-------------CD 213
Query: 369 YYLSSLGDMLPFL 381
+ +S L +++ +
Sbjct: 214 FIVSDLREVIKIV 226
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 31.7 bits (71), Expect = 0.068
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 307 IEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDT--TMEKAI-AWSKS 357
K + + + D N +I G + + G + T+ + + ++K+
Sbjct: 108 HHKTGVPFSQMVFFDDE-NRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAKA 160
>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 225
Score = 32.1 bits (71), Expect = 0.085
Identities = 19/175 (10%), Positives = 41/175 (23%), Gaps = 4/175 (2%)
Query: 168 AQYLKKHLDPKKKAYIVGSSGIADELNLAGIENFGVGPDVMIPGRDLKTDHEKLNLDPHV 227
Q +++ + I+ I ++ L V DV P + +
Sbjct: 33 PQLVQQDTRDSPVSNILSQFHIDNKEQLQAHILELVAKDVKDPILKQLQGYVWAHGYESG 92
Query: 228 GAVVVGFDSHISFPKLMKAACYLTNPNTLFVATNTDESFPMGPHVTVPGTGSMVAAVKTG 287
+ I F K K ++ + + + + G
Sbjct: 93 QIKAPVYADAIDFIKRKKRVFIYSSGSVKAQKLLF---GYVQDPNAPAHDSLDLNSYIDG 149
Query: 288 AQREPVVIGKPSKLIGSYLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVL 342
K + ++ L + D ++ G T L
Sbjct: 150 YFDINTSGKKTETQSYANILRDIGAKASEVLFLSDNPL-ELDAAAGVGIATGLAS 203
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA
{Escherichia coli [TaxId: 562]}
Length = 209
Score = 31.5 bits (71), Expect = 0.11
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 113 ISGADQVMNSLKSLGKKIFYVTNNSTKTREQLIVKLKH 150
A Q+++ G IF+VT S E + L
Sbjct: 88 KEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLAD 125
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 31.3 bits (69), Expect = 0.13
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLV 341
++++ +P T+ D + +I G ++LV
Sbjct: 149 HVLQAEGFSPSDTVFFDDNAD-NIEGANQLGITSILV 184
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium
tepidum [TaxId: 1097]}
Length = 228
Score = 31.3 bits (69), Expect = 0.16
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 311 NLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYY 370
N +P + ++IGD + DIR +++ V TG+ T EE
Sbjct: 165 NYSPSQIVIIGDTEH-DIRCARELDARSIAVATGNFT-----------MEELARHKPGTL 212
Query: 371 LSSLGDMLPFLSS 383
+ + L+S
Sbjct: 213 FKNFAETDEVLAS 225
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 210
Score = 31.0 bits (68), Expect = 0.20
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 313 NPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKSRVADYYLS 372
PE+ ++IGD D+ G Q L + G E + + DY
Sbjct: 153 APEQAIIIGDTKF-DMLGARETGIQKLAITWGFG-----------EQADLLNYQPDYIAH 200
Query: 373 SLGDMLPFL 381
++L +
Sbjct: 201 KPLEVLAYF 209
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis
[TaxId: 1358]}
Length = 221
Score = 29.4 bits (64), Expect = 0.58
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 305 YLIEKYNLNPERTLMIGDRGNTDIRLGYNNGFQTLLVLTGDTTMEKAIAWSKSEDEEYKS 364
+ P ++ + D I+ ++G + V + +D
Sbjct: 153 AAAHAVGVAPSESIGLEDSQA-GIQAIKDSGALPIGVGRPE---------DLGDDIVIVP 202
Query: 365 RVADYYLSSLGDML 378
+ Y L L ++
Sbjct: 203 DTSHYTLEFLKEVW 216
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 28.5 bits (63), Expect = 1.2
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 167 AAQYLKKHLDPKKKAYIVGSSG---IADEL------NLAGIENFGVGPDVMIPGRDL 214
A++L H + + + ++ SG + ++L + + I NF GR +
Sbjct: 13 TAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLV 69
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 259
Score = 27.2 bits (60), Expect = 2.8
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 194 NLAGIENFGVGPDVMIPGRDLKTDHEKLNLDPHVGAVVVGFDSHISF 240
IE G PD I R ++ D+ + LD + + ISF
Sbjct: 195 KEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISF 241
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase
{Lactobacillus plantarum [TaxId: 1590]}
Length = 207
Score = 26.8 bits (57), Expect = 3.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 94 SFDTVLTDCDGVLWLENELISGADQVMNSLKSLGKKI 130
++ ++ D DG L + + + L + GK
Sbjct: 2 TYQALMFDIDGTLTNSQPAYTTVMREV--LATYGKPF 36
>g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of
antigens protein SpaS {Salmonella typhimurium [TaxId:
90371]}
Length = 108
Score = 25.9 bits (57), Expect = 3.7
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 245 KAACYLTNPNTLFVATNTDESFPMGPHVTVPGTGSMVAAVKTGAQR 290
+ + NP + + P ++V T AV+ A++
Sbjct: 13 NSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEK 58
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 202
Score = 26.4 bits (57), Expect = 4.9
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 22 LVCMCLKTTFLLIPPKNQICLWEKLEKLQ 50
LV + T PP+N L +++
Sbjct: 52 LVLVVTSTFGNGDPPENGEKFGCALMEMR 80
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 26.0 bits (56), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 124 KSLGKKIFYVTNNSTKTRE 142
+GKKI +VT N+ K E
Sbjct: 4 SLVGKKIVFVTGNAKKLEE 22
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 26.6 bits (58), Expect = 6.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 46 LEKLQELQQYFCHKFIALKCIVATSQTTVMKLI 78
+K L+ + I+L C+ + +K I
Sbjct: 14 EKKCNNLRDLTQQERISLTCVQKATYLDCIKAI 46
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of
antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Length = 102
Score = 24.8 bits (54), Expect = 7.7
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 245 KAACYLTNPNTLFVATNTDESFPMGPHVTVPGTGSMVAAVKTGAQREPVVI 295
+ + NP + + + P +++ T AV+ A +
Sbjct: 14 NSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPT 64
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 25.8 bits (56), Expect = 8.6
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 198 IENFGVGPDVMIPGRD-LKTDHEKLNLDP 225
GV PD ++ + L E + P
Sbjct: 271 WLGGGVVPDAIVLADEALDKAKEIIAFHP 299
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,383,736
Number of extensions: 64777
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 36
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)