Query psy7234
Match_columns 164
No_of_seqs 107 out of 280
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 21:31:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p08_A Signal transduction his 100.0 1.3E-42 4.3E-47 254.9 9.9 114 14-139 2-115 (115)
2 3hls_A Guanylate cyclase solub 97.6 1.8E-05 6.2E-10 51.9 1.3 22 142-163 1-22 (66)
3 3olo_A Two-component sensor hi 68.2 19 0.00063 22.3 7.5 67 19-89 19-86 (118)
4 2qkp_A Uncharacterized protein 67.6 10 0.00036 27.0 5.4 45 17-61 22-70 (151)
5 3f1p_B ARYL hydrocarbon recept 65.7 23 0.00079 22.5 7.6 43 24-69 13-56 (121)
6 4hi4_A Aerotaxis transducer AE 62.9 5.7 0.00019 26.2 2.9 35 27-61 19-66 (121)
7 4dj3_A Period circadian protei 60.6 24 0.00083 28.7 6.9 101 22-126 35-162 (317)
8 2w0n_A Sensor protein DCUS; si 59.0 4.2 0.00014 25.5 1.6 41 21-61 22-67 (118)
9 3luq_A Sensor protein; PAS, hi 51.4 29 0.001 21.0 4.8 41 21-61 10-52 (114)
10 3mxq_A Sensor protein; PSI2, M 51.2 5.6 0.00019 28.7 1.4 44 19-62 27-72 (152)
11 3mfx_A Sensory BOX/ggdef famil 51.2 9.8 0.00034 26.2 2.6 36 26-61 20-56 (129)
12 3b33_A Sensor protein; structu 50.2 8 0.00027 24.5 1.9 44 19-62 12-57 (115)
13 3fc7_A HTR-like protein, senso 49.4 11 0.00036 23.9 2.4 36 26-61 32-68 (125)
14 3fg8_A Uncharacterized protein 48.7 8.7 0.0003 25.0 1.9 35 27-61 26-61 (118)
15 1ll8_A PAS kinase; PAS domain, 47.8 14 0.00048 23.4 2.9 36 26-61 11-48 (114)
16 4dm5_A Osmotically inducible l 42.4 12 0.0004 26.1 1.8 19 21-39 63-81 (103)
17 3a0s_A Sensor protein; PAS-fol 41.4 19 0.00063 20.8 2.5 34 27-60 6-40 (96)
18 3h9w_A Diguanylate cyclase wit 40.3 34 0.0012 21.4 3.9 88 28-121 8-101 (115)
19 2vlg_A Sporulation kinase A; h 39.6 24 0.00081 23.5 3.1 41 25-68 11-52 (111)
20 3eur_A Uncharacterized protein 39.3 19 0.00066 24.3 2.6 24 21-44 112-135 (142)
21 3mjq_A Uncharacterized protein 37.8 38 0.0013 21.0 3.8 35 27-61 13-48 (126)
22 3k3c_A Protein RV1364C/MT1410; 37.4 15 0.00052 24.6 1.8 42 19-61 22-65 (158)
23 4fo5_A Thioredoxin-like protei 37.2 28 0.00094 23.6 3.2 22 21-42 112-133 (143)
24 3ewl_A Uncharacterized conserv 36.4 29 0.00099 23.2 3.2 24 21-44 108-131 (142)
25 3mqq_A Transcriptional regulat 36.0 31 0.001 21.9 3.1 45 17-61 6-51 (120)
26 3mr0_A Sensory box histidine k 35.1 44 0.0015 22.1 3.9 92 27-122 23-118 (142)
27 2vv6_A FIXL, sensor protein FI 32.5 29 0.00099 22.0 2.5 34 27-60 7-41 (119)
28 3icy_A Sensor protein; sensory 31.9 39 0.0013 20.7 3.0 92 27-121 18-112 (118)
29 3vol_A Aerotaxis transducer AE 30.5 1.7E+02 0.0057 21.8 7.4 36 26-61 35-83 (233)
30 3kx0_X Uncharacterized protein 30.4 24 0.00082 24.9 1.9 42 19-61 42-85 (185)
31 3nja_A Probable ggdef family p 30.3 35 0.0012 21.0 2.6 93 23-121 16-115 (125)
32 2jhe_A Transcription regulator 29.8 31 0.0011 24.3 2.5 43 19-61 85-129 (190)
33 3f1p_A Endothelial PAS domain- 28.5 49 0.0017 20.7 3.1 42 25-69 11-53 (117)
34 1nwz_A PYP, photoactive yellow 27.8 1.6E+02 0.0054 20.6 7.6 89 17-116 20-117 (125)
35 3fkf_A Thiol-disulfide oxidore 27.4 48 0.0016 22.0 3.0 21 21-41 113-133 (148)
36 3ha9_A Uncharacterized thiored 26.8 32 0.0011 23.8 2.1 19 22-40 130-148 (165)
37 3hcz_A Possible thiol-disulfid 26.5 47 0.0016 22.0 2.8 22 21-42 110-131 (148)
38 3d72_A Vivid PAS protein VVD; 26.1 1.3E+02 0.0045 19.3 5.1 37 24-60 36-76 (149)
39 1mzu_A PPR; photoactive yellow 26.0 1.8E+02 0.006 20.6 6.7 89 17-116 25-122 (129)
40 3fw2_A Thiol-disulfide oxidore 25.7 53 0.0018 22.2 3.0 21 22-42 116-136 (150)
41 2lrn_A Thiol:disulfide interch 25.3 58 0.002 22.1 3.2 17 22-38 109-125 (152)
42 1d06_A Nitrogen fixation regul 25.1 46 0.0016 21.5 2.5 35 26-60 29-64 (130)
43 3bwl_A Sensor protein; structu 24.4 53 0.0018 20.7 2.7 36 26-61 30-68 (126)
44 2gj3_A Nitrogen fixation regul 24.1 54 0.0018 20.7 2.7 35 26-60 18-53 (120)
45 4hyz_A Uncharacterized protein 23.9 41 0.0014 23.1 2.1 17 22-38 96-112 (114)
46 3cax_A Uncharacterized protein 23.9 29 0.001 28.4 1.5 43 18-61 243-286 (369)
47 4evm_A Thioredoxin family prot 23.5 42 0.0014 21.6 2.1 18 22-39 104-121 (138)
48 2r78_A Sensor protein; sensory 22.9 59 0.002 20.7 2.7 33 27-59 25-58 (117)
49 3t50_A Blue-light-activated hi 21.8 1.5E+02 0.0051 18.2 5.4 35 27-61 11-49 (128)
50 2b5x_A YKUV protein, TRXY; thi 21.8 49 0.0017 21.9 2.2 19 21-39 109-127 (148)
51 2lrt_A Uncharacterized protein 21.7 53 0.0018 22.6 2.4 21 22-42 113-133 (152)
52 2lja_A Putative thiol-disulfid 21.4 56 0.0019 21.9 2.4 19 22-40 108-126 (152)
53 3gkn_A Bacterioferritin comigr 21.4 51 0.0018 22.7 2.3 17 23-39 125-141 (163)
54 1q98_A Thiol peroxidase, TPX; 20.5 57 0.0019 22.8 2.3 18 23-40 130-147 (165)
55 3lyx_A Sensory BOX/ggdef domai 20.3 69 0.0024 19.0 2.5 38 21-58 14-53 (124)
No 1
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl CY transferase; 2.00A {Nostoc punctiforme} PDB: 2p04_A
Probab=100.00 E-value=1.3e-42 Score=254.86 Aligned_cols=114 Identities=31% Similarity=0.608 Sum_probs=101.6
Q ss_pred eCHHHHHhhCCeEEEEcCCccEEEcChhhHhhhccccccCCCccceeEEEccCccceeehhhhhhccCCcEEEEEecCCC
Q psy7234 14 IGVASFCKAFPWHFIVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYFEIRRPNLLTVTFSSILKRVNSPFVIAIRLPQS 93 (164)
Q Consensus 14 i~~~~F~~lFPfHivfd~~l~I~~~G~~L~r~l~~~~~~~g~~~~d~F~l~rP~~i~~tf~~i~~~~~~~f~L~~~~~~~ 93 (164)
|++++||++||||++||++|+|+|+|++|+|++|+. ..|+++.|+|+++||+ +.+||++|++++|+.|+|+++.
T Consensus 2 i~~~~f~~lFPfHlvfd~~~~I~q~G~~L~k~~p~~--~~g~~~~d~F~l~RP~-~~~tf~~i~~~~n~~f~L~~~~--- 75 (115)
T 2p08_A 2 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEP--LVGKLIEQHFQINRPK-ILIDFDAISKQPRALFILEFLH--- 75 (115)
T ss_dssp CCHHHHHHHCTTCEEECTTCBEEEECHHHHHHCSSC--CTTSBGGGTEEEEESS-CCSCHHHHHTCTTSCEEEEETT---
T ss_pred cChHHHHHhCCeEEEECCCCEEEEeccHHHHhCccc--cCCCChhHeEEEeCCC-cccCHHHHHhhcCCEEEEEEcC---
Confidence 689999999999999999999999999999999974 3799999999999999 9999999999999999999873
Q ss_pred CCCCCCcceeeeeeEEEeCCCCeEEEeecCCCCchhhHhhcCCccc
Q psy7234 94 LQNSPVEGLEFKGQMVYCPESESLLFVASPFLDALDNLTSRGLFIS 139 (164)
Q Consensus 94 ~~~~~~~~l~LkGqm~~~~e~~~ilFL~SP~v~~le~l~~~gL~ls 139 (164)
+.++|||||+|++||++|+|||||+++++|||.++|||||
T Consensus 76 ------~~l~LKGqm~~~~e~~~ilfL~sP~v~~l~~l~~~GL~l~ 115 (115)
T 2p08_A 76 ------NGMQLKGQMMYQPEEEVIFFLGSPWITDTTSLAPLGIKLK 115 (115)
T ss_dssp ------TCCEEEEEEEEETTTTEEEEEEEECCCTTCCC--------
T ss_pred ------CCcEEEEEEEEcCCCCEEEEEeCCCcCCHHHHHHcCcccC
Confidence 6799999999999999999999999999999999999986
No 2
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=97.58 E-value=1.8e-05 Score=51.93 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=20.2
Q ss_pred CCCccchhhhhhhhhHHhhhcc
Q psy7234 142 PLHDATRDVILVGEQARAQLAQ 163 (164)
Q Consensus 142 ~~hD~~rDlll~~eq~~ae~~~ 163 (164)
.+||++||+|++|+|++||+++
T Consensus 1 ~~Hd~tRdlvl~~~q~~ae~~L 22 (66)
T 3hls_A 1 GSHMATRDLVLLGEQFREEYKL 22 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHhhHHHHHHHH
Confidence 3799999999999999999875
No 3
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=68.24 E-value=19 Score=22.34 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=41.9
Q ss_pred HHhhCCeEEEEcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCccceeehhhhhhccCCcEEEEEe
Q psy7234 19 FCKAFPWHFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLLTVTFSSILKRVNSPFVIAIR 89 (164)
Q Consensus 19 F~~lFPfHivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i~~tf~~i~~~~~~~f~L~~~ 89 (164)
|..+----+++|.+++|+.+-+...++++-. ....|+++.+++ |......|+.+.......++.+.+
T Consensus 19 ~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~~~ 86 (118)
T 3olo_A 19 INNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDID----VDFALHDWEEIRQKNNYTFKTRYR 86 (118)
T ss_dssp HHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTB----TTGGGSCHHHHHHHSEEEEEEEEE
T ss_pred HhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcc----cccCHHHHHHHHhcCcEEEEEEEE
Confidence 3333334567899999999999999998742 135788888876 321223366665543334444444
No 4
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=67.58 E-value=10 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHhhCCeEE-EEcCCccEEEcChh---hHhhhccccccCCCccceeE
Q psy7234 17 ASFCKAFPWHF-IVDRKLELVQLGAG---YMRLFGRCLKHLGSSVNNYF 61 (164)
Q Consensus 17 ~~F~~lFPfHi-vfd~~l~I~~~G~~---L~r~l~~~~~~~g~~~~d~F 61 (164)
+.+.+.+|.-| ++|++++|+.+-+. ..++++......|+++.+++
T Consensus 22 ~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g~~~~~iGr~v~~~~ 70 (151)
T 2qkp_A 22 NLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCH 70 (151)
T ss_dssp HHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSS
T ss_pred HHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcCCCHHHcCCCHHHhC
Confidence 34566778765 67999999999999 89999743357899998864
No 5
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=65.73 E-value=23 Score=22.54 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=32.1
Q ss_pred CeEEEEcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCccc
Q psy7234 24 PWHFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLL 69 (164)
Q Consensus 24 PfHivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i 69 (164)
-+-+++|.+++|..+.+...++++-. ....|+.+.+ +.+|...
T Consensus 13 d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~---~i~p~d~ 56 (121)
T 3f1p_B 13 RFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVE---FCHPEDQ 56 (121)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGG---GBCTTTH
T ss_pred ceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHH---eECHHHH
Confidence 36778999999999999999998632 1356777655 4678643
No 6
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=62.91 E-value=5.7 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.498 Sum_probs=27.9
Q ss_pred EEEcCCccEEEcChhhHhhhcc-------------ccccCCCccceeE
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGR-------------CLKHLGSSVNNYF 61 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~-------------~~~~~g~~~~d~F 61 (164)
+++|++++|+.+=+...++++. .....|+++.+++
T Consensus 19 iv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~ 66 (121)
T 4hi4_A 19 MIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 66 (121)
T ss_dssp EEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGC
T ss_pred EEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhc
Confidence 5689999999999999999851 1136788888766
No 7
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=60.55 E-value=24 Score=28.69 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=61.0
Q ss_pred hCCeEEEEcCC-ccEEEcChhhHhhhccc-cccCCCccceeEEEccCccceeehhhhh-------------------hcc
Q psy7234 22 AFPWHFIVDRK-LELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLLTVTFSSIL-------------------KRV 80 (164)
Q Consensus 22 lFPfHivfd~~-l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i~~tf~~i~-------------------~~~ 80 (164)
+==|-++++.+ |+|+++.++..++++=. ....|+.+. ++++|.+ .-.|.+.+ ...
T Consensus 35 ldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~---d~ihp~D-~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~ 110 (317)
T 4dj3_A 35 TDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFV---DLLAPQD-VRAFYAHTAPTQLPFWNNWTQRASQYECAP 110 (317)
T ss_dssp TTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGG---GGBCGGG-HHHHHHHTCTTTCCCCC----------CCC
T ss_pred cCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchh---hhcChhh-HHHHHHhhcccCCCCcCCCcccccccCCCC
Confidence 33588999986 99999999999999632 135677754 4567763 33333321 123
Q ss_pred CCcEEEEEecCCCCCCCCCcceeeeeeEEEeCC------CCeEEEeecCCCC
Q psy7234 81 NSPFVIAIRLPQSLQNSPVEGLEFKGQMVYCPE------SESLLFVASPFLD 126 (164)
Q Consensus 81 ~~~f~L~~~~~~~~~~~~~~~l~LkGqm~~~~e------~~~ilFL~SP~v~ 126 (164)
...|..+.|.....+......++.-|-+..... ..+.|++..|...
T Consensus 111 ~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~ 162 (317)
T 4dj3_A 111 AKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHS 162 (317)
T ss_dssp CCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCC
T ss_pred CceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCC
Confidence 456778887643333334456777787766532 2334455566544
No 8
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=59.01 E-value=4.2 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=29.9
Q ss_pred hhCCe-EEEEcCCccEEEcChhhHhhhc----cccccCCCccceeE
Q psy7234 21 KAFPW-HFIVDRKLELVQLGAGYMRLFG----RCLKHLGSSVNNYF 61 (164)
Q Consensus 21 ~lFPf-Hivfd~~l~I~~~G~~L~r~l~----~~~~~~g~~~~d~F 61 (164)
+..|- -+++|.+++|+.+-+...++++ ......|+++.+++
T Consensus 22 ~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~ 67 (118)
T 2w0n_A 22 QSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWS 67 (118)
T ss_dssp HCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCS
T ss_pred hhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCccccc
Confidence 33443 3578999999999999999997 22235677777654
No 9
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=51.38 E-value=29 Score=21.02 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.7
Q ss_pred hhCCeE-EEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 21 KAFPWH-FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 21 ~lFPfH-ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
+..|-- +++|.+++|+.+-+...++++-. ....|+++.++|
T Consensus 10 ~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 52 (114)
T 3luq_A 10 EHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF 52 (114)
T ss_dssp HTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC
T ss_pred hcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC
Confidence 334443 56899999999999999998632 135788888876
No 10
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=51.20 E-value=5.6 Score=28.69 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHhhCCeEE-EEcCCccEEEcChhhHhhhccc-cccCCCccceeEE
Q psy7234 19 FCKAFPWHF-IVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFE 62 (164)
Q Consensus 19 F~~lFPfHi-vfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~ 62 (164)
..+..|.-| ++|++|+|+.+-+...++++-. ....|+++.|+|.
T Consensus 27 il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p 72 (152)
T 3mxq_A 27 LLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFP 72 (152)
T ss_dssp HHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSG
T ss_pred HHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcC
Confidence 334445544 7899999999999999998643 1367999999874
No 11
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=51.20 E-value=9.8 Score=26.16 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=29.4
Q ss_pred EEEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
-+++|.+|+|+.+-+...++++-. ....|+++.+++
T Consensus 20 i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~ 56 (129)
T 3mfx_A 20 MILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFL 56 (129)
T ss_dssp EEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGB
T ss_pred EEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHc
Confidence 467999999999999999999743 136799988876
No 12
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.18 E-value=8 Score=24.52 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHhhCCeE-EEEcCCccEEEcChhhHhhhccc-cccCCCccceeEE
Q psy7234 19 FCKAFPWH-FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFE 62 (164)
Q Consensus 19 F~~lFPfH-ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~ 62 (164)
..+..|-- +++|++++|+.+-+...++++-. ....|+++.+++.
T Consensus 12 il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~ 57 (115)
T 3b33_A 12 ILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQ 57 (115)
T ss_dssp HHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCS
T ss_pred HHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhC
Confidence 34445554 56899999999999999999742 1256888888753
No 13
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=49.38 E-value=11 Score=23.94 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=29.1
Q ss_pred EEEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
-+++|.+++|+.+-+...++++-. ....|+++.+++
T Consensus 32 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 68 (125)
T 3fc7_A 32 IVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVM 68 (125)
T ss_dssp EEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSS
T ss_pred EEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhC
Confidence 356899999999999999998742 135789988877
No 14
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=48.67 E-value=8.7 Score=25.03 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=28.7
Q ss_pred EEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
+++|.+++|+.+-+...++++-. ....|+++.++|
T Consensus 26 ~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~ 61 (118)
T 3fg8_A 26 MALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVL 61 (118)
T ss_dssp EEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHC
T ss_pred EEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHc
Confidence 57899999999999999998742 135799988876
No 15
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=47.79 E-value=14 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.7
Q ss_pred EEEEcCC-ccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 26 HFIVDRK-LELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 26 Hivfd~~-l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
-+++|.+ ++|+.+-+...++++-. ....|+++.+++
T Consensus 11 i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~ 48 (114)
T 1ll8_A 11 IFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFF 48 (114)
T ss_dssp EEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGS
T ss_pred EEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhc
Confidence 3678999 99999999999999732 135788888765
No 16
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=42.37 E-value=12 Score=26.08 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=16.1
Q ss_pred hhCCeEEEEcCCccEEEcC
Q psy7234 21 KAFPWHFIVDRKLELVQLG 39 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G 39 (164)
+-=||++.||.+|++..-|
T Consensus 63 ~~q~Y~VsFd~~GrV~~~G 81 (103)
T 4dm5_A 63 QQQPFYVSFDGSGKVDGSG 81 (103)
T ss_dssp EEEEEEEEECTTSBEEEEE
T ss_pred ceeeEEEEECCCCCCcccc
Confidence 3448999999999999876
No 17
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=41.44 E-value=19 Score=20.81 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=27.4
Q ss_pred EEEcCCccEEEcChhhHhhhccc-cccCCCcccee
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNY 60 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~ 60 (164)
+++|.+++|+.+-+...++++-. ....|+++.++
T Consensus 6 ~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 6 ITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred EEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 57899999999999999999742 13568888776
No 18
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=40.29 E-value=34 Score=21.44 Aligned_cols=88 Identities=9% Similarity=0.024 Sum_probs=48.7
Q ss_pred EEc-CCccEEEcChhhHhhhcccc-ccCCCccceeEEEccCccceeehhhhhh--ccCCcEEE--EEecCCCCCCCCCcc
Q psy7234 28 IVD-RKLELVQLGAGYMRLFGRCL-KHLGSSVNNYFEIRRPNLLTVTFSSILK--RVNSPFVI--AIRLPQSLQNSPVEG 101 (164)
Q Consensus 28 vfd-~~l~I~~~G~~L~r~l~~~~-~~~g~~~~d~F~l~rP~~i~~tf~~i~~--~~~~~f~L--~~~~~~~~~~~~~~~ 101 (164)
.+| .+++|..+.+...++++-.. ...| ......+.+|.+...-.+.+.. ..+..+.+ +.+.. +....-
T Consensus 8 ~~d~~~~~~~~~n~~~~~l~G~~~~e~~~--~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~----dG~~~w 81 (115)
T 3h9w_A 8 KINWQTMAFEYIGPQIEALLGWPQGSWKS--VEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHR----DGHYVW 81 (115)
T ss_dssp EEETTTTEEEEECTHHHHHHCSCGGGCCB--HHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECT----TSCEEE
T ss_pred EEEcCCCcEEEEChhHHHHhCCChHHccC--HHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcC----CCCEEE
Confidence 457 78999999999999986421 1222 3344567788633322222221 12224444 44331 112244
Q ss_pred eeeeeeEEEeCCCCeEEEee
Q psy7234 102 LEFKGQMVYCPESESLLFVA 121 (164)
Q Consensus 102 l~LkGqm~~~~e~~~ilFL~ 121 (164)
+..+|..++-++++.+-++|
T Consensus 82 ~~~~~~~~~d~~G~~~~~~G 101 (115)
T 3h9w_A 82 IRDVVHVVRDDSGEVEALIG 101 (115)
T ss_dssp EEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEE
Confidence 77788888777777655554
No 19
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=39.58 E-value=24 Score=23.50 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=32.0
Q ss_pred eEEEEcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCcc
Q psy7234 25 WHFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNL 68 (164)
Q Consensus 25 fHivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~ 68 (164)
+-+++|.+|+|+.+.++..++++-. ....|+.+.| +.+|.+
T Consensus 11 ~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~---~ihp~D 52 (111)
T 2vlg_A 11 IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKT---FLHEED 52 (111)
T ss_dssp EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGG---GBCGGG
T ss_pred EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHH---eECHhH
Confidence 6788999999999999999999743 1256877655 578874
No 20
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=39.33 E-value=19 Score=24.35 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=19.8
Q ss_pred hhCCeEEEEcCCccEEEcChhhHh
Q psy7234 21 KAFPWHFIVDRKLELVQLGAGYMR 44 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G~~L~r 44 (164)
...|.-+++|++|+|+..+.+...
T Consensus 112 ~~~P~~~lid~~G~i~~~~~~~~~ 135 (142)
T 3eur_A 112 RAIPTLYLLDKNKTVLLKDATLQK 135 (142)
T ss_dssp TTCSEEEEECTTCBEEEEEECHHH
T ss_pred CcCCeEEEECCCCcEEecCCCHHH
Confidence 458999999999999998776544
No 21
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=37.82 E-value=38 Score=21.01 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=26.4
Q ss_pred EEEcCCccEEEcChhhHhhhcccc-ccCCCccceeE
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRCL-KHLGSSVNNYF 61 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~~-~~~g~~~~d~F 61 (164)
+++|.+++|+.+-+...++++-.. ...|..+.+++
T Consensus 13 ~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 48 (126)
T 3mjq_A 13 LIINREGRLLYANTAVPKKLGYTHEELMSMHILTIT 48 (126)
T ss_dssp EEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHH
T ss_pred EEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHc
Confidence 578999999999999999986421 24567766654
No 22
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=37.36 E-value=15 Score=24.59 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHhhCCeE-EEEc-CCccEEEcChhhHhhhccccccCCCccceeE
Q psy7234 19 FCKAFPWH-FIVD-RKLELVQLGAGYMRLFGRCLKHLGSSVNNYF 61 (164)
Q Consensus 19 F~~lFPfH-ivfd-~~l~I~~~G~~L~r~l~~~~~~~g~~~~d~F 61 (164)
+.+.-|-- +++| .+++|+.+-+...++++-. ...|+++.++|
T Consensus 22 ~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~-~~~G~~~~~~~ 65 (158)
T 3k3c_A 22 IFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL-DTVGQPAREVY 65 (158)
T ss_dssp HHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC-CSTTSBHHHHS
T ss_pred HHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc-hhcCCcHHHhC
Confidence 33444554 4678 9999999999999999764 56788888776
No 23
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=37.15 E-value=28 Score=23.55 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=18.4
Q ss_pred hhCCeEEEEcCCccEEEcChhh
Q psy7234 21 KAFPWHFIVDRKLELVQLGAGY 42 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G~~L 42 (164)
...|..+++|++|+|+..+.+-
T Consensus 112 ~~~P~~~lid~~G~i~~~~~~~ 133 (143)
T 4fo5_A 112 RKGFKNFLINDEGVIIAANVTP 133 (143)
T ss_dssp GGCCCEEEECTTSBEEEESCCH
T ss_pred CCCCcEEEECCCCEEEEccCCH
Confidence 3589999999999999876553
No 24
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=36.45 E-value=29 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=18.8
Q ss_pred hhCCeEEEEcCCccEEEcChhhHh
Q psy7234 21 KAFPWHFIVDRKLELVQLGAGYMR 44 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G~~L~r 44 (164)
...|..+++|++|+|+..+.+...
T Consensus 108 ~~~P~~~lid~~G~i~~~~~~~~~ 131 (142)
T 3ewl_A 108 RATPTIYLLDGRKRVILKDTSMEQ 131 (142)
T ss_dssp CSSSEEEEECTTCBEEECSCCHHH
T ss_pred CCCCeEEEECCCCCEEecCCCHHH
Confidence 358999999999999986655443
No 25
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=36.01 E-value=31 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHhhCCeEEEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 17 ASFCKAFPWHFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 17 ~~F~~lFPfHivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
...++.-|--|++|.+++|+.+-+...++++-. ....|+++.+++
T Consensus 6 ~~~~~~~~~~i~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~ 51 (120)
T 3mqq_A 6 KTAFHLAPIGLVLSRDRVIEDCNDELAAIFRCARADLIGRSFEVLY 51 (120)
T ss_dssp HHHHHHCSSEEEEEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGS
T ss_pred HHHHhcCCceEEEecCCEEHHHHHHHHHHhCcCHHHhCCCchhhcc
Confidence 345666788889999999999999999998742 135788876653
No 26
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=35.06 E-value=44 Score=22.13 Aligned_cols=92 Identities=12% Similarity=0.179 Sum_probs=51.8
Q ss_pred EEEcCCccEEEcChhhHhhhccccccCCCccceeEEEccCccceeehhhhhh--ccCCcEEEE--EecCCCCCCCCCcce
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYFEIRRPNLLTVTFSSILK--RVNSPFVIA--IRLPQSLQNSPVEGL 102 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~~~~~g~~~~d~F~l~rP~~i~~tf~~i~~--~~~~~f~L~--~~~~~~~~~~~~~~l 102 (164)
..+|.+..++.+.+...++++-..............+++|.+...-.+.+.. ..+..|.++ ++.+ +....-+
T Consensus 23 w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~----~G~~~w~ 98 (142)
T 3mr0_A 23 WDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTR----SGDFRWI 98 (142)
T ss_dssp EEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECT----TSCEEEE
T ss_pred EEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECC----CCCEEEE
Confidence 4578999999999999999864211112234456778899744332222222 123445544 3321 1123457
Q ss_pred eeeeeEEEeCCCCeEEEeec
Q psy7234 103 EFKGQMVYCPESESLLFVAS 122 (164)
Q Consensus 103 ~LkGqm~~~~e~~~ilFL~S 122 (164)
..+|+.++-+++..+-++|+
T Consensus 99 ~~~~~~~~d~~g~~~~~~G~ 118 (142)
T 3mr0_A 99 QSRGQALWNSAGEPYRMVGW 118 (142)
T ss_dssp EEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEE
Confidence 77888888777776666653
No 27
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=32.48 E-value=29 Score=22.03 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.0
Q ss_pred EEEcCCccEEEcChhhHhhhccc-cccCCCcccee
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNY 60 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~ 60 (164)
+++|.+++|+.+-+...++++-. ....|+++.++
T Consensus 7 ~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l 41 (119)
T 2vv6_A 7 IVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNIL 41 (119)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGG
T ss_pred EEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHh
Confidence 57899999999999999999632 13568887764
No 28
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=31.93 E-value=39 Score=20.73 Aligned_cols=92 Identities=7% Similarity=-0.098 Sum_probs=46.2
Q ss_pred EEEcCCccEEEcChhhHhhhccccc-cCCCccceeEEEccCccceeehhhhhh--ccCCcEEEEEecCCCCCCCCCccee
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRCLK-HLGSSVNNYFEIRRPNLLTVTFSSILK--RVNSPFVIAIRLPQSLQNSPVEGLE 103 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~~~-~~g~~~~d~F~l~rP~~i~~tf~~i~~--~~~~~f~L~~~~~~~~~~~~~~~l~ 103 (164)
+.+|.++++..+.+...++++-... ..|. ....+.+.+|.+...-.+.+.. ..+..+..+.+-. .++....-+.
T Consensus 18 ~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~-~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~--~~~g~~~w~~ 94 (118)
T 3icy_A 18 YHLDVSGQATIRFRPPAFLKTLVSEHAGTT-RLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIV--TPEGKLHWIE 94 (118)
T ss_dssp EEECTTSCEEECCCCCGGGGGGEEEETTEE-EEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEEEE--CTTCCEEEEE
T ss_pred EEEEcCCCceEEechhHhhcCCCHHHccCC-hhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEEEEE--CCCCCEEEEE
Confidence 5689999999999999988863211 1121 1223456777633322222222 2233444433210 0111123356
Q ss_pred eeeeEEEeCCCCeEEEee
Q psy7234 104 FKGQMVYCPESESLLFVA 121 (164)
Q Consensus 104 LkGqm~~~~e~~~ilFL~ 121 (164)
.+|..++-+++..+-++|
T Consensus 95 ~~~~~~~~~~g~~~~~~g 112 (118)
T 3icy_A 95 DHMRSSFSDDGLFSGIDG 112 (118)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 666666666665543443
No 29
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=30.49 E-value=1.7e+02 Score=21.75 Aligned_cols=36 Identities=14% Similarity=0.413 Sum_probs=27.8
Q ss_pred EEEEcCCccEEEcChhhHhhhc-----------cc--cccCCCccceeE
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFG-----------RC--LKHLGSSVNNYF 61 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~-----------~~--~~~~g~~~~d~F 61 (164)
-+++|.+++|+.+=+...++++ +. ....|+++.+++
T Consensus 35 vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~ 83 (233)
T 3vol_A 35 VMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 83 (233)
T ss_dssp EEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGS
T ss_pred EEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHc
Confidence 4679999999999999999883 11 135788887765
No 30
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=30.42 E-value=24 Score=24.87 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHhhCCeEE-EEc-CCccEEEcChhhHhhhccccccCCCccceeE
Q psy7234 19 FCKAFPWHF-IVD-RKLELVQLGAGYMRLFGRCLKHLGSSVNNYF 61 (164)
Q Consensus 19 F~~lFPfHi-vfd-~~l~I~~~G~~L~r~l~~~~~~~g~~~~d~F 61 (164)
+.+.-|--+ ++| .+++|+.+-+...++++-. ...|+++.++|
T Consensus 42 l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~-~~~G~~~~~~~ 85 (185)
T 3kx0_X 42 IFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL-DTVGQPAREVY 85 (185)
T ss_dssp HHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC-SCTTSBHHHHC
T ss_pred HHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc-cccCCcHHHHC
Confidence 344456555 578 9999999999999999854 56799988876
No 31
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=30.29 E-value=35 Score=21.00 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCeE-EEEcCCccEEEcChhhHhhhcccc-ccCCCccceeEEEccCccceee---hhhhhhccCCcEE--EEEecCCCCC
Q psy7234 23 FPWH-FIVDRKLELVQLGAGYMRLFGRCL-KHLGSSVNNYFEIRRPNLLTVT---FSSILKRVNSPFV--IAIRLPQSLQ 95 (164)
Q Consensus 23 FPfH-ivfd~~l~I~~~G~~L~r~l~~~~-~~~g~~~~d~F~l~rP~~i~~t---f~~i~~~~~~~f~--L~~~~~~~~~ 95 (164)
-|-- +++|.++++..+.+...++++-.. ...| .....+.+..|.....- +..... .+..+. .+.+...
T Consensus 16 ~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~e~~~~~~~--- 90 (125)
T 3nja_A 16 AGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDA-TEDAYFQRVHPDDRARVRRELDRHVL-GDRPFDVEYRIVRPD--- 90 (125)
T ss_dssp -CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCC-BHHHHHHHBCTTTHHHHHHHHHHHHH-SCCCEEEEEEEECTT---
T ss_pred CCeeEEEEEcCCCcEEECHHHHHHhCCCcccccc-cHHHHHhhcChhHHHHHHHHHHHHHh-cCCCceEEEEEECCC---
Confidence 3444 468999999999999999986421 1223 33445566777632221 222222 222233 3343211
Q ss_pred CCCCcceeeeeeEEEeCCCCeEEEee
Q psy7234 96 NSPVEGLEFKGQMVYCPESESLLFVA 121 (164)
Q Consensus 96 ~~~~~~l~LkGqm~~~~e~~~ilFL~ 121 (164)
.....+.++|..++-+++...-++|
T Consensus 91 -g~~~~~~~~~~~~~~~~g~~~~~~g 115 (125)
T 3nja_A 91 -GQVRELLERNHIQRQASGQVDHLWG 115 (125)
T ss_dssp -SCEEEEEEEEEEEECTTSCEEEEEE
T ss_pred -CCEEEEEEeeEEEECCCCCEEEEEE
Confidence 1123466667766666666544444
No 32
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=29.82 E-value=31 Score=24.25 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHhhCCe-EEEEcCCccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 19 FCKAFPW-HFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 19 F~~lFPf-Hivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
..+..|- =+++|++|+|+.+-+...++++-. ....|+++.+++
T Consensus 85 il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~ 129 (190)
T 2jhe_A 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 (190)
T ss_dssp HHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTS
T ss_pred HHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHh
Confidence 3344444 457999999999999999999742 124688888764
No 33
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=28.52 E-value=49 Score=20.67 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=31.1
Q ss_pred eEEEEcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCccc
Q psy7234 25 WHFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLL 69 (164)
Q Consensus 25 fHivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i 69 (164)
|-++.|.+++|+.+.+...++++-. ....|+.+.+ +.+|...
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~---~~~p~d~ 53 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYE---FYHALDS 53 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGG---GBCGGGH
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCchhh---eECHHHH
Confidence 5678999999999999999998632 1256776555 5578633
No 34
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=27.76 E-value=1.6e+02 Score=20.60 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=56.4
Q ss_pred HHHHhhCCeEEE-EcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCccceee----hhhhhhccCC---cEEEE
Q psy7234 17 ASFCKAFPWHFI-VDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLLTVT----FSSILKRVNS---PFVIA 87 (164)
Q Consensus 17 ~~F~~lFPfHiv-fd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i~~t----f~~i~~~~~~---~f~L~ 87 (164)
....+..|+-|+ +|++++|+..=...+++.+-. ....|+++ |++..|..-.+. |+.-.. .+. .|.-.
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~---f~~~~~~~~~~~f~~rf~~~~~-~g~l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNF---FKDVAPCTDSPEFYGKFKEGVA-SGNLNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBC---CCCCCGGGCSTTTHHHHHHHHH-HTCCEEEEEEE
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCch---hhhccchhcccHHHHHHHHHHh-cCceeEEEEEE
Confidence 446777888887 899999999999999987543 23689988 454566534455 443333 232 22222
Q ss_pred EecCCCCCCCCCcceeeeeeEEEeCCCCe
Q psy7234 88 IRLPQSLQNSPVEGLEFKGQMVYCPESES 116 (164)
Q Consensus 88 ~~~~~~~~~~~~~~l~LkGqm~~~~e~~~ 116 (164)
... ....+.++=.|...++++.
T Consensus 96 ~~~-------~~~p~~v~i~l~~~~~~~~ 117 (125)
T 1nwz_A 96 FDY-------QMTPTKVKVHMKKALSGDS 117 (125)
T ss_dssp ECT-------TSCCEEEEEEEEECSSSSE
T ss_pred EcC-------CCCEEEEEEEEEEcCCCCE
Confidence 221 2345777777888777753
No 35
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=27.35 E-value=48 Score=21.98 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=18.0
Q ss_pred hhCCeEEEEcCCccEEEcChh
Q psy7234 21 KAFPWHFIVDRKLELVQLGAG 41 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G~~ 41 (164)
..+|..+++|++|+|+....+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~~ 133 (148)
T 3fkf_A 113 LTLPTNILLSPTGKILARDIQ 133 (148)
T ss_dssp CSSSEEEEECTTSBEEEESCC
T ss_pred CCcCEEEEECCCCeEEEecCC
Confidence 368999999999999987753
No 36
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=26.78 E-value=32 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=16.5
Q ss_pred hCCeEEEEcCCccEEEcCh
Q psy7234 22 AFPWHFIVDRKLELVQLGA 40 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~G~ 40 (164)
-+|..+++|++|+|+..|.
T Consensus 130 ~~P~~~lid~~G~i~~~g~ 148 (165)
T 3ha9_A 130 SIDYIVIMDKSSNVLYAGT 148 (165)
T ss_dssp SSSEEEEEETTCCEEEEEE
T ss_pred CceEEEEEcCCCcEEEeCC
Confidence 5799999999999999554
No 37
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=26.51 E-value=47 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.8
Q ss_pred hhCCeEEEEcCCccEEEcChhh
Q psy7234 21 KAFPWHFIVDRKLELVQLGAGY 42 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G~~L 42 (164)
...|..+++|++|+|+....+.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~ 131 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGY 131 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCG
T ss_pred CCCCEEEEECCCCcEEEecCCH
Confidence 3589999999999998765543
No 38
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=26.07 E-value=1.3e+02 Score=19.34 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=27.3
Q ss_pred CeEEEEc---CCccEEEcChhhHhhhccc-cccCCCcccee
Q psy7234 24 PWHFIVD---RKLELVQLGAGYMRLFGRC-LKHLGSSVNNY 60 (164)
Q Consensus 24 PfHivfd---~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~ 60 (164)
.--+++| ++++|+.+-+...++++-. ....|+++.++
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l 76 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFL 76 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGG
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHh
Confidence 3456777 8999999999999998632 13567777654
No 39
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=26.03 E-value=1.8e+02 Score=20.57 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=55.6
Q ss_pred HHHHhhCCeEEE-EcCCccEEEcChhhHhhhccc-cccCCCccceeEEEccCccceee----hhhhhhccCC---cEEEE
Q psy7234 17 ASFCKAFPWHFI-VDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNYFEIRRPNLLTVT----FSSILKRVNS---PFVIA 87 (164)
Q Consensus 17 ~~F~~lFPfHiv-fd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F~l~rP~~i~~t----f~~i~~~~~~---~f~L~ 87 (164)
....+..|+-|+ +|++++|+..=...+++.+-. ....|+++ |++..|..-.+. |+.-.. .+. .|.-.
T Consensus 25 ~~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~---f~~~~p~~~~~~f~grf~~~~~-~G~l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNF---FTEVAPCTNIPAFSGRFMDGVT-SGTLDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBC---CCCCCGGGCSTTTHHHHHHHHH-TSCCEEEEEEE
T ss_pred HHHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCch---hhhccchhcccHHHHHHHHHHh-cCceeEEEEEE
Confidence 345677788887 899999999999999987543 23689988 554566534455 443333 232 22222
Q ss_pred EecCCCCCCCCCcceeeeeeEEEeCCCCe
Q psy7234 88 IRLPQSLQNSPVEGLEFKGQMVYCPESES 116 (164)
Q Consensus 88 ~~~~~~~~~~~~~~l~LkGqm~~~~e~~~ 116 (164)
... ....+.++=.|...++++.
T Consensus 101 ~~~-------~~~p~~v~i~l~~~~~~~~ 122 (129)
T 1mzu_A 101 FDF-------QMAPVRVQIRMQNAGVPDR 122 (129)
T ss_dssp EEC-------SSCEEEEEEEEEECSSTTE
T ss_pred EcC-------CCCEEEEEEEEEEcCCCCE
Confidence 221 1345777777777777653
No 40
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=25.68 E-value=53 Score=22.24 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=17.8
Q ss_pred hCCeEEEEcCCccEEEcChhh
Q psy7234 22 AFPWHFIVDRKLELVQLGAGY 42 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~G~~L 42 (164)
..|..+++|++|+|+....+-
T Consensus 116 ~~P~~~lid~~G~i~~~~~~~ 136 (150)
T 3fw2_A 116 KIPANILLSSDGKILAKNLRG 136 (150)
T ss_dssp SSSEEEEECTTSBEEEESCCH
T ss_pred ccCeEEEECCCCEEEEccCCH
Confidence 579999999999999887543
No 41
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=25.28 E-value=58 Score=22.09 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.3
Q ss_pred hCCeEEEEcCCccEEEc
Q psy7234 22 AFPWHFIVDRKLELVQL 38 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~ 38 (164)
.+|.-+++|++|+|+..
T Consensus 109 ~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 109 GFPHIILVDPEGKIVAK 125 (152)
T ss_dssp SSCEEEEECTTSEEEEE
T ss_pred cCCeEEEECCCCeEEEe
Confidence 47999999999999986
No 42
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=25.06 E-value=46 Score=21.45 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=27.2
Q ss_pred EEEEcCCccEEEcChhhHhhhccc-cccCCCcccee
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNY 60 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~ 60 (164)
-+++|.+++|+.+-+...++++-. ....|+++.++
T Consensus 29 i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l 64 (130)
T 1d06_A 29 TVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRIL 64 (130)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGG
T ss_pred EEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHH
Confidence 356899999999999999999732 13568887764
No 43
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=24.42 E-value=53 Score=20.68 Aligned_cols=36 Identities=6% Similarity=-0.030 Sum_probs=25.6
Q ss_pred EEEEcCCccEEEcChhhHhhhcccc-cc--CCCccceeE
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFGRCL-KH--LGSSVNNYF 61 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~~~~-~~--~g~~~~d~F 61 (164)
-+++|.+++|+.+-+...++++-.. .. .|..+.+++
T Consensus 30 i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~ 68 (126)
T 3bwl_A 30 IDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLM 68 (126)
T ss_dssp EEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTT
T ss_pred EEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhcc
Confidence 3568999999999999999986321 13 355555543
No 44
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=24.10 E-value=54 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.3
Q ss_pred EEEEcCCccEEEcChhhHhhhccc-cccCCCcccee
Q psy7234 26 HFIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNNY 60 (164)
Q Consensus 26 Hivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~ 60 (164)
-++.|.+++|+.+-+...++++-. ....|+.+.++
T Consensus 18 i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l 53 (120)
T 2gj3_A 18 ISITDLKANILYANRAFRTITGYGSEEVLGKNESIL 53 (120)
T ss_dssp EEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGG
T ss_pred EEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHc
Confidence 457899999999999999998732 12457766553
No 45
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=23.94 E-value=41 Score=23.07 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=13.9
Q ss_pred hCCeEEEEcCCccEEEc
Q psy7234 22 AFPWHFIVDRKLELVQL 38 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~ 38 (164)
...|.|.||+||+|...
T Consensus 96 ~~~f~i~Fd~d~kl~G~ 112 (114)
T 4hyz_A 96 NVNYSLAYDEDMNLVSF 112 (114)
T ss_dssp EEEEEEEECTTSCEEEE
T ss_pred ceEEEEEECCCCcEeee
Confidence 34689999999999753
No 46
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=23.93 E-value=29 Score=28.44 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=33.3
Q ss_pred HHHhhCCeEE-EEcCCccEEEcChhhHhhhccccccCCCccceeE
Q psy7234 18 SFCKAFPWHF-IVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYF 61 (164)
Q Consensus 18 ~F~~lFPfHi-vfd~~l~I~~~G~~L~r~l~~~~~~~g~~~~d~F 61 (164)
...+..|--| ++|++|+|+.+-++ .+++.......|+++.+++
T Consensus 243 ~IL~~l~dgIivvD~~g~I~~~N~a-e~i~~~~~e~iGr~v~~~~ 286 (369)
T 3cax_A 243 AIFEALPVDVTFIDKDDRVRFFSPG-ERIFTRTPSVLGRPVQLCH 286 (369)
T ss_dssp HHHHHSSSEEEEECTTSBEEEECCS-SCSSCCCGGGTTCBTTTSS
T ss_pred HHHHhCCCcEEEECCCCcEEEEcCH-HHccCChHHHcCCcHHHHC
Confidence 4556677766 57999999999999 9988433347899998875
No 47
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.46 E-value=42 Score=21.64 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred hCCeEEEEcCCccEEEcC
Q psy7234 22 AFPWHFIVDRKLELVQLG 39 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~G 39 (164)
-+|..+++|++|+|+..-
T Consensus 104 ~~P~~~lid~~G~i~~~~ 121 (138)
T 4evm_A 104 SYPTQAFIDKEGKLVKTH 121 (138)
T ss_dssp SSSEEEEECTTCCEEEEE
T ss_pred cCCeEEEECCCCcEEEee
Confidence 479999999999997643
No 48
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=22.94 E-value=59 Score=20.70 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=24.9
Q ss_pred EEEcCCccEEEcChhhHhhhccc-cccCCCccce
Q psy7234 27 FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVNN 59 (164)
Q Consensus 27 ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~d 59 (164)
++.|.+++|+.+-+...++++-. ....|+++.+
T Consensus 25 ~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~ 58 (117)
T 2r78_A 25 FIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV 58 (117)
T ss_dssp EEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTT
T ss_pred EEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHH
Confidence 46899999999999999998732 1245776554
No 49
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=21.84 E-value=1.5e+02 Score=18.24 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=27.0
Q ss_pred EEEcC---CccEEEcChhhHhhhccc-cccCCCccceeE
Q psy7234 27 FIVDR---KLELVQLGAGYMRLFGRC-LKHLGSSVNNYF 61 (164)
Q Consensus 27 ivfd~---~l~I~~~G~~L~r~l~~~-~~~~g~~~~d~F 61 (164)
+++|. +++|+.+-+...++++-. ....|.++.+++
T Consensus 11 ~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~ 49 (128)
T 3t50_A 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQ 49 (128)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred EEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhc
Confidence 67898 999999999999998632 135688776655
No 50
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=21.76 E-value=49 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.1
Q ss_pred hhCCeEEEEcCCccEEEcC
Q psy7234 21 KAFPWHFIVDRKLELVQLG 39 (164)
Q Consensus 21 ~lFPfHivfd~~l~I~~~G 39 (164)
..+|.-+++|++|+|+...
T Consensus 109 ~~~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 109 EYVPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp CCSSEEEEECTTCBEEEEE
T ss_pred CCCCEEEEECCCCcEEEEe
Confidence 3579999999999998753
No 51
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=21.71 E-value=53 Score=22.56 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.6
Q ss_pred hCCeEEEEcCCccEEEcChhh
Q psy7234 22 AFPWHFIVDRKLELVQLGAGY 42 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~G~~L 42 (164)
..|.-+++|++|+|+....+.
T Consensus 113 ~~P~~~lid~~G~i~~~~~g~ 133 (152)
T 2lrt_A 113 NLPSVFLVNRNNELSARGENI 133 (152)
T ss_dssp SCSEEEEEETTTEEEEETTTC
T ss_pred cCceEEEECCCCeEEEecCCH
Confidence 479999999999999876553
No 52
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=21.40 E-value=56 Score=21.92 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=16.5
Q ss_pred hCCeEEEEcCCccEEEcCh
Q psy7234 22 AFPWHFIVDRKLELVQLGA 40 (164)
Q Consensus 22 lFPfHivfd~~l~I~~~G~ 40 (164)
-+|.-+++|++|+|+....
T Consensus 108 ~~P~~~lid~~G~i~~~~~ 126 (152)
T 2lja_A 108 GIPRFILLDRDGKIISANM 126 (152)
T ss_dssp SSCCEEEECTTSCEEESSC
T ss_pred CCCEEEEECCCCeEEEccC
Confidence 5799999999999998754
No 53
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=21.36 E-value=51 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.080 Sum_probs=15.1
Q ss_pred CCeEEEEcCCccEEEcC
Q psy7234 23 FPWHFIVDRKLELVQLG 39 (164)
Q Consensus 23 FPfHivfd~~l~I~~~G 39 (164)
.|..+++|++|+|+..-
T Consensus 125 ~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 125 ERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CCEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCCeEEEEE
Confidence 79999999999999654
No 54
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=20.46 E-value=57 Score=22.82 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=15.6
Q ss_pred CCeEEEEcCCccEEEcCh
Q psy7234 23 FPWHFIVDRKLELVQLGA 40 (164)
Q Consensus 23 FPfHivfd~~l~I~~~G~ 40 (164)
.|..+++|++|+|+....
T Consensus 130 ~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 130 SRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp CCEEEEECTTSBEEEEEE
T ss_pred ceeEEEEcCCCEEEEEEe
Confidence 399999999999998754
No 55
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=20.31 E-value=69 Score=19.02 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=27.1
Q ss_pred hhCCeE-EEEcCCccEEEcChhhHhhhccc-cccCCCccc
Q psy7234 21 KAFPWH-FIVDRKLELVQLGAGYMRLFGRC-LKHLGSSVN 58 (164)
Q Consensus 21 ~lFPfH-ivfd~~l~I~~~G~~L~r~l~~~-~~~~g~~~~ 58 (164)
+..|-. +++|.+++|..+-+...++++-. ....|..+.
T Consensus 14 ~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~ 53 (124)
T 3lyx_A 14 DYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN 53 (124)
T ss_dssp GTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred hhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH
Confidence 334444 56899999999999999998642 124677766
Done!