RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7234
         (164 letters)



>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated.  The HNOBA domain is
           found associated with the HNOB domain and pfam00211 in
           soluble cyclases and signalling proteins. The HNOB
           domain is predicted to function as a heme-dependent
           sensor for gaseous ligands, and transduce diverse
           downstream signals, in both bacteria and animals.
          Length = 209

 Score =  195 bits (497), Expect = 3e-64
 Identities = 77/164 (46%), Positives = 106/164 (64%), Gaps = 15/164 (9%)

Query: 11  DLKIGVASFCKAFPWHFIVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYFEIRRPNLLT 70
            LKI  A+FCKAFP+H + DR +E+VQ G G +R+  + L      + + FE+ RP  +T
Sbjct: 5   KLKISTATFCKAFPFHLVFDRDMEIVQAGEGLLRVLPKLLLGKKK-LTDVFELVRP-KIT 62

Query: 71  VTFSSILKRVNSPFVIAIR-------------LPQSLQNSPVEGLEFKGQMVYCPESESL 117
            TF +IL  +N+ FV+  +                 +  SP++ L  KGQM+Y PES+S+
Sbjct: 63  FTFENILSHINTVFVLRTKSGVMSVTDNNNVEDAADIDESPLKSLRLKGQMIYIPESDSI 122

Query: 118 LFVASPFLDALDNLTSRGLFISDIPLHDATRDVILVGEQARAQL 161
           LF+ SP +D LD LT RGL++SDIPLHDATRD+IL+GEQARAQL
Sbjct: 123 LFLCSPSVDNLDELTGRGLYLSDIPLHDATRDLILLGEQARAQL 166


>gnl|CDD|236807 PRK10958, PRK10958, leucine export protein LeuE; Provisional.
          Length = 212

 Score = 27.1 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 5/30 (16%)

Query: 14 IGVASFCKAFPWHFIVDRKLELVQLGAGYM 43
           GVAS  KA P  F V +      LGA Y+
Sbjct: 63 AGVASLLKATPLLFNVVK-----YLGAAYL 87


>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
          Length = 599

 Score = 27.3 bits (60), Expect = 4.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 80  VNSPFVIAIRLPQSL---QNSPVEGL--EFKGQMVYCPESESLLFVASP 123
            +SP+ + I L   L     + V  +  +  GQM+Y PES+SL+   SP
Sbjct: 207 SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQMLYYPESDSLVQFPSP 255


>gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B'';
           Validated.
          Length = 494

 Score = 27.2 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 62  EIRRPNLLTVTFSSILKRVNSPFVIAIR 89
           E  R  LL V+F S+   +  PFVI +R
Sbjct: 199 ERNRDGLLEVSFPSVPGSI--PFVILMR 224


>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is a
           member of the ABC transporter superfamily of proteins of
           which all members for which functions are known except
           the UvrA proteins are involved in the transport of
           material through membranes. UvrA orthologs are involved
           in the recognition of DNA damage as a step in nucleotide
           excision repair. This family is based on the
           phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
           Stanford University) [DNA metabolism, DNA replication,
           recombination, and repair].
          Length = 925

 Score = 26.9 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 9   VLDLKIGVA-SFCKAFPWHFIVDRKLE-LVQLGAGYMRL 45
           VLD+ +  A  F +A P    + RKL+ L  +G GY+RL
Sbjct: 788 VLDMTVEEAYEFFEAVP---SISRKLQTLCDVGLGYIRL 823


>gnl|CDD|144386 pfam00765, Autoind_synth, Autoinducer synthetase. 
          Length = 182

 Score = 25.7 bits (57), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 62 EIRRPNLLTVTFSSILKRVNSP 83
          E + PN++T TFSS    ++ P
Sbjct: 64 ETKYPNMITGTFSSYFDDISLP 85


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0751    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,209,878
Number of extensions: 740864
Number of successful extensions: 719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 13
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.9 bits)