RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7234
         (164 letters)



>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous
           to domain in soluble guanylyl CY transferase; 2.00A
           {Nostoc punctiforme} PDB: 2p04_A
          Length = 115

 Score =  113 bits (285), Expect = 1e-33
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 14  IGVASFCKAFPWHFIVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYFEIRRPNLLTVTF 73
           +      KAFP+HF   R  E+VQ G    R+    L  +G  +  +F+I RP +  + F
Sbjct: 2   LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPL--VGKLIEQHFQINRPKI-LIDF 58

Query: 74  SSILKRVNSPFVIAIRLPQSLQNSPVEGLEFKGQMVYCPESESLLFVASPFLDALDNLTS 133
            +I K+  + F++              G++ KGQM+Y PE E + F+ SP++    +L  
Sbjct: 59  DAISKQPRALFILEFL---------HNGMQLKGQMMYQPEEEVIFFLGSPWITDTTSLAP 109

Query: 134 RGLFI 138
            G+ +
Sbjct: 110 LGIKL 114


>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
           signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
           GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
          Length = 66

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 143 LHDATRDVILVGEQARAQL 161
            H ATRD++L+GEQ R + 
Sbjct: 2   SHMATRDLVLLGEQFREEY 20


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.010
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 32/138 (23%)

Query: 26  HFIVDRKLELVQLGAGYMRLFGRCLKHL----GSSVNNYFEIRRPNLLTVTFSSILKRVN 81
           H I      L++      + +  CL  L     +   N F +    LLT  F  +   ++
Sbjct: 228 HSIQAELRRLLKS-----KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 82  SPFVIAIRLPQSLQNSPVEGLEFKGQMVYCPESESLLFVASPFLD-ALDNLTSRGLFISD 140
           +     I L     +     L          E +SLL     +LD    +L    L  + 
Sbjct: 283 AATTTHISL-----DHHSMTLTP-------DEVKSLL---LKYLDCRPQDLPREVLTTN- 326

Query: 141 IPLHDATRDVILVGEQAR 158
            P       + ++ E  R
Sbjct: 327 -PRR-----LSIIAESIR 338


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.55
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 19/43 (44%)

Query: 92  QSLQNSPVEGLE--FKGQMVYCPESESLLFVASPFLDALDNLT 132
           Q+L+      L+   K   +Y  +S        P L A+   T
Sbjct: 20  QALKK-----LQASLK---LYADDSA-------PAL-AI-KAT 45



 Score = 27.6 bits (60), Expect = 1.3
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 25/51 (49%)

Query: 50  LKHLGSSVNNYFEIRRPNLLTVTFSSILKRVNSPFVIAIRLPQSLQNSPVE 100
           LK L +S+  Y      +             ++P  +AI        + +E
Sbjct: 22  LKKLQASLKLY----ADD-------------SAP-ALAI-------KATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.61
 Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 35/158 (22%)

Query: 8    SVLDLKIGVASFCKAFPWHFIVDRKLELVQLGAGYMRLFGRCLKHLGSSVNNYFEIRRPN 67
            S+LD+   V +       HF  ++   + +    Y  +    +          F+    +
Sbjct: 1660 SILDI---VINNPVNLTIHFGGEKGKRIRE---NYSAMIFETIVDGKLKTEKIFKEINEH 1713

Query: 68   LLTVTFSS---ILKR-VNS-PFVIAIRLPQSLQNSPVEGLEFKGQMVYCPESE-----SL 117
              + TF S   +L     + P   A+ L   ++ +  E L+ KG +   P        SL
Sbjct: 1714 STSYTFRSEKGLLSATQFTQP---ALTL---MEKAAFEDLKSKGLI---PADATFAGHSL 1764

Query: 118  -----LFVAS----PFLDALDNLTSRGLFISDIPLHDA 146
                 L  +          ++ +  RG+ +      D 
Sbjct: 1765 GEYAAL-ASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801



 Score = 26.9 bits (59), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 72   TFSSILKRVNSPFVIAIRLPQSLQNSPVEGLEF 104
            T +++L  +    +  I L +SL    VEG  F
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,387,352
Number of extensions: 128659
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 9
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.3 bits)