BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7235
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/226 (54%), Positives = 149/226 (65%), Gaps = 32/226 (14%)
Query: 58 GESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETI 117
G+ ++AK +VTMLFSDIVGFT+ICS +P VI+ML LY +FD CG+LDVYKVETI
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETI 63
Query: 118 GDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAV 177
GDAYCVAGGLHK THA +IA MALKM+ + G+PIK
Sbjct: 64 GDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPIK---------------- 107
Query: 178 VLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRI 237
MRIGLH+G+V AGVVGVKMPRYCLFG+NVT+ANKFES S P +I
Sbjct: 108 ----------------MRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKI 151
Query: 238 NISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRH 283
N+SPTTY L++ F F PRSRE LP FP IPGIC+F++ Y+
Sbjct: 152 NVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQ 197
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQL-DVYKVETIG 118
S A+ H T+LFSDIVGFT I S ++P V S+L+ LY +FDA + +YKVETIG
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIG 60
Query: 119 DAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVV 178
DAY V + HA + AL+M + ++ G+P+++RV
Sbjct: 61 DAYMVVCNVTVPCDDHADVLLEFALRMHEEASRVASSLGEPVRIRV-------------- 106
Query: 179 LKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRIN 238
G+H+G V+AGVVG KMPR+ LFG V A++ ES E +I+
Sbjct: 107 ------------------GMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIH 148
Query: 239 ISPTTYECLRNTEHFTFEPR 258
IS Y CLR+ E F R
Sbjct: 149 ISEACYXCLRSKERFEIRER 168
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQL-DVYKVETIG 118
S A+ H T+LFSDIVGFT I S ++P V S+L+ LY +FDA + +YKVETIG
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIG 60
Query: 119 DAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVV 178
DAY V + HA + AL+M + ++ G+P+++RV
Sbjct: 61 DAYMVVCNVTVPCDDHADVLLEFALRMHEEASRVASSLGEPVRIRV-------------- 106
Query: 179 LKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRIN 238
G+H+G V+AGVVG KMPR+ LFG V A++ ES E +I+
Sbjct: 107 ------------------GMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIH 148
Query: 239 ISPTTYECLRNTEHFTFEPR 258
IS Y CLR+ E F R
Sbjct: 149 ISEACYCCLRSKERFEIRER 168
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 40/199 (20%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTAT----PFMVISMLENLYNKFDAFCGQLD---VYK 113
+ AK +++VT+LFS IVGF + CS ++++L +LY +FD VYK
Sbjct: 5 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYK 64
Query: 114 VETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVL 173
VET+GD Y GL + HA+ I +AL M+ QV+V
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAG------------------QVQVD 106
Query: 174 RPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSE 233
+V Q+ IG+HTG V+ GV+G +MPRYCLFG+ V + ++ E+ E
Sbjct: 107 GESV---------------QITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGE 151
Query: 234 PLRINISPTTYECLRNTEH 252
+IN+S TY CL + E+
Sbjct: 152 KGKINVSEYTYRCLMSPEN 170
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 40/199 (20%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTAT----PFMVISMLENLYNKFDAFCGQLD---VYK 113
+ AK +++VT+LFS IVGF + CS ++++L +LY +FD VYK
Sbjct: 6 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYK 65
Query: 114 VETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVL 173
VET+ D Y GL + HA+ I +AL M+ QV+V
Sbjct: 66 VETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAG------------------QVQVD 107
Query: 174 RPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSE 233
+V Q+ IG+HTG V+ GV+G +MPRY LFG+ V + ++ E+ E
Sbjct: 108 GESV---------------QITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGE 152
Query: 234 PLRINISPTTYECLRNTEH 252
+IN+S TY CL + E+
Sbjct: 153 KGKINVSEYTYRCLMSPEN 171
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 32/190 (16%)
Query: 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGD 119
+I A ++ ++LF+DIVGFT S+ P ++ L+ LY+ FD Q + K+E GD
Sbjct: 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61
Query: 120 AYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVL 179
+Y V G+ + + H Q +A AL M + A G P+ LRV
Sbjct: 62 SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPVPLRV--------------- 106
Query: 180 KMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINI 239
GL TG V+AGVVG + RYC++G V VA++ ES +I +
Sbjct: 107 -----------------GLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQV 149
Query: 240 SPTTYECLRN 249
YE L++
Sbjct: 150 PDEVYERLKD 159
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120
I + H++V++LF+DI GFTS+ S T ++ L L+ +FD + +++ +GD
Sbjct: 19 IYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDC 78
Query: 121 YCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLK 180
Y GL + ++ HA M + MI ++V +
Sbjct: 79 YYCVSGLPEARADHAHCCVEMGMDMIEA--------------------------ISLVRE 112
Query: 181 MRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINIS 240
M ++ MR+G+H+G V GV+G++ ++ ++ ++VT+AN E+G + RI+I+
Sbjct: 113 MTGVN------VNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 166
Query: 241 PTT 243
T
Sbjct: 167 KAT 169
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120
I + H++V++LF+DI GFTS+ S T ++ L L+ +FD + +++ +GD
Sbjct: 27 IYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDC 86
Query: 121 YCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLK 180
Y GL + ++ HA M + MI + I L V + V V
Sbjct: 87 YYCVSGLPEARADHAHCCVEMGMDMI-----------EAISL-VREMTGVNV-------- 126
Query: 181 MRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINIS 240
MR+G+H+G V GV+G++ ++ ++ ++VT+AN E+G + RI+I+
Sbjct: 127 ------------NMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
Query: 241 PTT 243
T
Sbjct: 175 KAT 177
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120
I + H++V++LF+DI GFTS+ S T ++ L L+ +FD + +++ +GD
Sbjct: 27 IYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDC 86
Query: 121 YCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLK 180
Y GL + ++ HA M + MI ++V +
Sbjct: 87 YYCVSGLPEARADHAHCCVEMGMDMIEA--------------------------ISLVRE 120
Query: 181 MRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINIS 240
M ++ MR+G+H+G V GV+G++ ++ ++ ++VT+AN E+G + RI+I+
Sbjct: 121 MTGVN------VNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
Query: 241 PTTYECLRNTEHFTFEP 257
T L + EP
Sbjct: 175 KATLSYLNGD--YEVEP 189
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 111 VYKVETIGDAYCVAGGLHKTQST-HAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQ 169
V K++TIG Y A GL S HAQ + + + + T+++
Sbjct: 64 VEKIKTIGSTYMAATGLSAIPSQEHAQ-------------------EPERQYMHIGTMVE 104
Query: 170 VRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFE 229
A+V K+ I+ F++R+G++ G V+AGV+G + P+Y ++G+ V VA++ +
Sbjct: 105 ---FAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMD 161
Query: 230 SGSEPLRINISPTT 243
S +I ++ T
Sbjct: 162 STGVLDKIQVTEET 175
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 111 VYKVETIGDAYCVAGGLHKTQST-HAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQ 169
V K++TIG Y A GL S HAQ + + + + T+++
Sbjct: 61 VEKIKTIGSTYMAATGLSAIPSQEHAQ-------------------EPERQYMHIGTMVE 101
Query: 170 VRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFE 229
A+V K+ I+ F++R+G++ G V+AGV+G + P+Y ++G+ V VA++ +
Sbjct: 102 ---FAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMD 158
Query: 230 SGSEPLRINISPTT 243
S +I ++ T
Sbjct: 159 STGVLDKIQVTEET 172
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 111 VYKVETIGDAYCVAGGLHKTQST-HAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQ 169
V K++TIG Y A GL S HAQ + + + + T+++
Sbjct: 65 VEKIKTIGSTYMAATGLSAIPSQEHAQ-------------------EPERQYMHIGTMVE 105
Query: 170 VRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFE 229
A+V K+ I+ F++R+G++ G V+AGV+G + P+Y ++G+ V VA++ +
Sbjct: 106 ---FAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMD 162
Query: 230 SGSEPLRINISPTT 243
S +I ++ T
Sbjct: 163 STGVLDKIQVTEET 176
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 34/189 (17%)
Query: 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFD----AFCGQLDVYKVETIGDAY 121
+ +T+ FSDI GFT + + +L N N+ + G +D + +GD
Sbjct: 7 RKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF----VGDCV 62
Query: 122 CVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKM 181
V G TQ +A +++ I +R + VL+
Sbjct: 63 MVFFGDPSTQGAKKDAVAAVSM---------------GIAMR----------KHMKVLRQ 97
Query: 182 RWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPR-YCLFGHNVTVANKFESGSEPLRINIS 240
+W ++R+G++TG G G Y + G V +A++ ES SE I IS
Sbjct: 98 QWRAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILIS 157
Query: 241 PTTYECLRN 249
TY +++
Sbjct: 158 HETYSLIKD 166
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 45/230 (19%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFC----GQLDVYKVETIGDAYCVA 124
+T+L SD+ GFTS P V+ +L + K G +D E +GD V
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTID----EFMGDGILVL 70
Query: 125 GGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWI 184
G +Q A R ++M + + +V+ L L+P
Sbjct: 71 FGAPTSQQDDALRAVACGVEMQLAL--------REVNQQVTGLG----LQP--------- 109
Query: 185 DDSHLAVFQMRIGLHTGTVLAGVVGV-KMPRYCLFGHNVTVANKFESGSEPLRINISPTT 243
+M IG++TG V+ G +G K +Y + G V + + ES + +I IS TT
Sbjct: 110 -------LEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQIFISSTT 162
Query: 244 YECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP---SLPSEE 290
E + H +R + PKG + P + + V P SL EE
Sbjct: 163 LEAAGDRVHVN---GNRTVQPKGVKD--PVVIWDVAGVGEPYNLSLAVEE 207
>pdb|2NTS|A Chain A, Crystal Structure Of Sek-Hvb5.1
pdb|2NTT|A Chain A, Crystal Structure Of Sek
pdb|2NTT|B Chain B, Crystal Structure Of Sek
Length = 217
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 183 WIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYC-----LFGHNVTV-------ANKFES 230
WI+ +H + ++ + V A + VK+ +Y ++GHN T +KF S
Sbjct: 100 WINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYS 159
Query: 231 GSEPLRINISPTTYECLRNTEHFTFE--PRSRELLPKGF 267
G NI T+ L N + F+++ + LPK F
Sbjct: 160 G-----FNIGKVTFH-LNNNDTFSYDLFYTGDDGLPKSF 192
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 183 WIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYC-----LFGHNVTV-------ANKFES 230
WI+ +H + ++ + V A + VK+ +Y ++GHN T +KF S
Sbjct: 100 WINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYS 159
Query: 231 GSEPLRINISPTTYECLRNTEHFTFE--PRSRELLPKGF 267
G NI T+ L N + F+++ + LPK F
Sbjct: 160 G-----FNIGKVTFH-LNNNDTFSYDLFYTGDDGLPKSF 192
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVA 124
VT++F+DI T++ + A P ++ + + + G+ Y+V+T+GD++ +A
Sbjct: 13 VTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIA 67
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 50 DIAKRLWLGESIEAKTHEHVTMLFSDIVGFT 80
DI L+ G E + HE V + F D VGF+
Sbjct: 24 DIQANLFNGGKCEEEAHEAVRLTFHDAVGFS 54
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVA 124
VT++F+DI T++ + A P ++ + + + + + Y+V+T+GD++ +A
Sbjct: 13 VTLIFTDIESSTALWA-AHPDLMPDAVATHHRLIRSLITRYECYEVKTVGDSFMIA 67
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 146 IHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVL 179
+H A H+ DG + R++ + + VLRP V +
Sbjct: 214 LHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAI 247
>pdb|3VR6|G Chain G, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 217
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 230 SGSEPLRINISPTTYECLRNTEHFTFEPRSRELL 263
SGS +R+N++PT E R + T R +LL
Sbjct: 3 SGSSGMRLNVNPTRMELTRLKKQLTTATRGHKLL 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,259,465
Number of Sequences: 62578
Number of extensions: 364839
Number of successful extensions: 832
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 31
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)