Query psy7235
Match_columns 305
No_of_seqs 186 out of 1470
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 3.5E-50 7.6E-55 386.7 25.8 254 1-290 375-629 (671)
2 PF00211 Guanylate_cyc: Adenyl 100.0 2E-37 4.3E-42 264.2 17.6 183 62-280 2-184 (184)
3 smart00044 CYCc Adenylyl- / gu 100.0 6.8E-36 1.5E-40 257.2 21.6 184 35-249 2-187 (194)
4 KOG3619|consensus 100.0 1.6E-35 3.5E-40 295.2 21.0 229 14-279 591-841 (867)
5 KOG1023|consensus 100.0 7.7E-36 1.7E-40 284.4 16.8 243 10-287 234-481 (484)
6 KOG3619|consensus 100.0 1.1E-35 2.3E-40 296.5 17.7 245 3-282 32-291 (867)
7 COG2114 CyaA Adenylate cyclase 100.0 3.5E-32 7.7E-37 239.9 22.6 197 39-283 21-218 (227)
8 KOG3618|consensus 100.0 1.1E-32 2.4E-37 264.9 16.0 243 12-289 250-535 (1318)
9 cd07302 CHD cyclase homology d 100.0 4.4E-31 9.4E-36 221.9 21.3 177 68-278 1-177 (177)
10 KOG3618|consensus 100.0 5.8E-30 1.3E-34 246.3 12.1 223 25-285 1041-1275(1318)
11 cd07556 Nucleotidyl_cyc_III Cl 99.5 1.9E-12 4.1E-17 103.1 15.5 132 69-238 2-133 (133)
12 PF05165 GGDN: GGDN family; I 96.1 0.093 2E-06 46.4 11.2 60 66-125 125-185 (246)
13 PRK09966 putative inner membra 95.5 0.77 1.7E-05 43.6 16.0 80 67-151 277-356 (407)
14 PF00990 GGDEF: GGDEF domain; 95.2 0.22 4.7E-06 39.9 9.6 82 67-151 31-112 (161)
15 PRK10245 adrA diguanylate cycl 94.9 0.55 1.2E-05 44.4 12.9 81 67-153 235-315 (366)
16 PRK11059 regulatory protein Cs 94.8 1.4 3E-05 44.9 16.2 81 68-153 259-340 (640)
17 PRK09894 diguanylate cyclase; 94.8 0.87 1.9E-05 41.0 13.4 78 67-150 157-234 (296)
18 smart00267 GGDEF diguanylate c 94.3 0.94 2E-05 35.9 11.3 78 68-151 34-111 (163)
19 COG2199 c-di-GMP synthetase (d 94.3 1.4 3.1E-05 36.6 12.7 80 66-151 49-128 (181)
20 COG3706 PleD Response regulato 94.2 0.87 1.9E-05 44.0 12.2 83 66-154 299-381 (435)
21 COG2429 Archaeal GTP cyclohydr 93.9 0.69 1.5E-05 40.3 9.9 61 67-127 130-191 (250)
22 PRK11829 biofilm formation reg 92.8 2.9 6.3E-05 42.4 14.4 80 67-151 261-340 (660)
23 PRK13561 putative diguanylate 92.6 3.5 7.7E-05 41.8 14.7 79 67-150 257-335 (651)
24 cd01949 GGDEF Diguanylate-cycl 92.3 2.4 5.2E-05 33.2 10.6 58 67-125 30-87 (158)
25 PRK02240 GTP cyclohydrolase II 91.2 2.8 6E-05 37.4 10.3 60 66-125 132-193 (254)
26 TIGR02577 cas_TM1794_Crm2 CRIS 90.6 2.5 5.3E-05 41.6 10.5 79 67-153 342-441 (482)
27 PRK14538 putative bifunctional 89.5 2.6 5.6E-05 44.2 10.1 159 68-232 204-397 (838)
28 PRK15426 putative diguanylate 88.8 5.8 0.00013 39.4 11.9 78 67-150 428-505 (570)
29 COG3887 Predicted signaling pr 88.1 4.5 9.8E-05 40.3 10.0 87 70-161 176-262 (655)
30 TIGR00254 GGDEF diguanylate cy 88.0 11 0.00025 29.8 11.3 57 68-125 33-89 (165)
31 PF10851 DUF2652: Protein of u 81.7 21 0.00046 27.7 9.1 42 187-231 68-109 (116)
32 PRK02240 GTP cyclohydrolase II 80.1 19 0.0004 32.3 9.5 55 71-125 4-61 (254)
33 TIGR02578 cas_TM1811_Csm1 CRIS 80.1 16 0.00034 37.4 10.4 80 66-153 520-612 (648)
34 PRK10060 RNase II stability mo 79.0 16 0.00035 37.3 10.3 78 67-150 265-342 (663)
35 PRK11359 cyclic-di-GMP phospho 76.9 95 0.0021 32.0 21.2 59 66-125 401-459 (799)
36 PRK09776 putative diguanylate 72.6 29 0.00064 37.3 10.7 79 67-151 695-773 (1092)
37 PF11294 DUF3095: Protein of u 70.8 70 0.0015 30.4 11.3 56 67-125 25-82 (373)
38 PRK14163 heat shock protein Gr 61.7 69 0.0015 28.0 8.7 31 91-121 112-142 (214)
39 PRK14139 heat shock protein Gr 52.5 1.4E+02 0.0031 25.4 9.0 34 88-121 106-139 (185)
40 PRK14147 heat shock protein Gr 52.0 1.4E+02 0.0031 25.0 9.0 33 89-121 93-125 (172)
41 PRK14157 heat shock protein Gr 49.4 97 0.0021 27.3 7.7 25 96-120 154-178 (227)
42 PRK14140 heat shock protein Gr 43.7 2.1E+02 0.0045 24.5 8.9 31 89-119 114-144 (191)
43 PRK14151 heat shock protein Gr 39.5 2.3E+02 0.0051 23.8 9.3 31 89-119 98-128 (176)
44 PRK14146 heat shock protein Gr 38.0 2.8E+02 0.006 24.3 9.1 34 88-121 130-163 (215)
45 PRK14143 heat shock protein Gr 37.7 2.9E+02 0.0062 24.6 8.9 33 89-121 145-177 (238)
46 PRK09581 pleD response regulat 37.7 3.5E+02 0.0075 25.3 15.5 58 68-126 323-380 (457)
47 PF01025 GrpE: GrpE; InterPro 37.4 1.5E+02 0.0033 24.2 6.9 34 88-121 87-120 (165)
48 cd00446 GrpE GrpE is the adeni 35.1 2.3E+02 0.005 22.5 8.2 32 88-119 61-92 (137)
49 PRK14150 heat shock protein Gr 32.7 3.2E+02 0.0069 23.4 8.8 34 88-121 115-148 (193)
50 COG1353 Predicted CRISPR-assoc 32.5 1.8E+02 0.0039 30.7 7.9 80 67-154 520-621 (799)
51 PRK14164 heat shock protein Gr 32.3 3.4E+02 0.0073 23.8 8.4 25 96-120 148-172 (218)
52 PRK14153 heat shock protein Gr 30.8 3.5E+02 0.0075 23.2 9.4 34 88-121 109-142 (194)
53 KOG4797|consensus 28.2 2.8E+02 0.0061 21.4 6.7 45 12-57 63-107 (123)
54 PRK14158 heat shock protein Gr 27.1 4E+02 0.0087 22.8 9.2 33 88-120 115-148 (194)
55 PRK14144 heat shock protein Gr 25.5 4.4E+02 0.0095 22.7 8.1 33 89-121 121-153 (199)
56 PF04420 CHD5: CHD5-like prote 24.9 1.4E+02 0.003 24.7 4.6 35 11-45 68-102 (161)
57 PRK14154 heat shock protein Gr 24.8 4.6E+02 0.01 22.7 9.1 33 89-121 130-163 (208)
58 TIGR00219 mreC rod shape-deter 24.4 1.6E+02 0.0034 26.8 5.2 33 12-44 76-108 (283)
59 PRK14161 heat shock protein Gr 23.7 4.5E+02 0.0097 22.2 9.2 32 89-120 98-130 (178)
60 PRK14834 undecaprenyl pyrophos 22.7 5.5E+02 0.012 22.9 8.2 49 66-119 59-109 (249)
61 PF08952 DUF1866: Domain of un 22.1 2.6E+02 0.0056 22.9 5.4 30 97-126 48-78 (146)
62 PRK14145 heat shock protein Gr 21.4 5.3E+02 0.011 22.2 8.3 32 89-120 119-150 (196)
63 PRK04239 hypothetical protein; 21.3 1.2E+02 0.0027 23.5 3.3 63 38-100 38-100 (110)
64 PF15530 Toxin_50: Putative to 21.2 59 0.0013 26.6 1.5 24 194-217 87-110 (168)
65 PF05165 GGDN: GGDN family; I 21.1 6E+02 0.013 22.7 10.2 53 73-125 3-58 (246)
66 PRK14142 heat shock protein Gr 20.9 5.7E+02 0.012 22.5 7.7 83 10-120 48-135 (223)
67 PF11608 Limkain-b1: Limkain b 20.5 3.4E+02 0.0075 20.1 5.2 39 97-139 18-56 (90)
68 PF09457 RBD-FIP: FIP domain ; 20.5 2.6E+02 0.0056 18.2 5.4 37 11-47 2-38 (48)
No 1
>KOG4171|consensus
Probab=100.00 E-value=3.5e-50 Score=386.71 Aligned_cols=254 Identities=44% Similarity=0.740 Sum_probs=239.7
Q ss_pred CcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCcc
Q psy7235 1 MELSSPGSKLTDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFT 80 (305)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft 80 (305)
++|+|+++....+|+.++++++++++++.++++.||+|...||..++|+.||++|+.|+.....++++|||||+||++||
T Consensus 375 lILl~~Q~~aq~el~~~lE~~~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft 454 (671)
T KOG4171|consen 375 LVLLGQQRRAQLELNLELEKLKEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFT 454 (671)
T ss_pred heecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccCC-CCc
Q psy7235 81 SICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHD-GKP 159 (305)
Q Consensus 81 ~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~~~~~~~~~~-~~~ 159 (305)
.++..+.|-+++.+||++|+.||+++..++++++.++||+||++.|+|.....||..++++||.|....+++..+. +.+
T Consensus 455 ~ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~~~~p 534 (671)
T KOG4171|consen 455 AICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPVTGEP 534 (671)
T ss_pred hHhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876654 444
Q ss_pred cchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEe
Q psy7235 160 IKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINI 239 (305)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~v 239 (305)
+. +|||||+|+|++||||.+.|+|++||++||+|+|||+.+.|+.|+|
T Consensus 535 i~--------------------------------iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~v 582 (671)
T KOG4171|consen 535 IQ--------------------------------IRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINV 582 (671)
T ss_pred eE--------------------------------EEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEe
Confidence 44 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCCCCCCCC
Q psy7235 240 SPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEE 290 (305)
Q Consensus 240 S~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~~~~~~ 290 (305)
|+.||+.|+....|.|+++|.+.+ || ++++.||||.....+..+...
T Consensus 583 S~~T~~~l~~~~~f~f~pRg~v~v-k~---kg~m~tyFL~~~~~~~~~~~~ 629 (671)
T KOG4171|consen 583 SPTTYRKLKKQGSFEFEPRGRVEV-KG---KGPMETYFLERSLGPSIWEPC 629 (671)
T ss_pred CHHHHHHHHhCCCceeeecCcccc-CC---CCceEEEEEEecCCCCCCccc
Confidence 999999999877799999999999 66 899999999988776644433
No 2
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=2e-37 Score=264.22 Aligned_cols=183 Identities=32% Similarity=0.535 Sum_probs=167.2
Q ss_pred cccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHH
Q psy7235 62 EAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWM 141 (305)
Q Consensus 62 ~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~ 141 (305)
+.+.++++||||+||+|||.+++..+++++..++|.++..+++++.+|+|.++++.||++|++||.+....+++..|+++
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~ 81 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQF 81 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHH
T ss_pred CccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccccccccccccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCch
Q psy7235 142 ALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHN 221 (305)
Q Consensus 142 Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~ 221 (305)
|+++.+.++.++.... +++++|||||+|++++|.+|..+++|++||++
T Consensus 82 al~~~~~~~~~~~~~~--------------------------------~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~ 129 (184)
T PF00211_consen 82 ALALLEALERLNKESG--------------------------------PPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDA 129 (184)
T ss_dssp HHHHHHHHHHHHHHHH--------------------------------SS-EEEEEEEEEEEEEEEEESSSEEEEEESHH
T ss_pred ccchhhcccccccccc--------------------------------eeeeeeccccccccccccccCcccceeeeehh
Confidence 9999999877665432 34559999999999999999777889999999
Q ss_pred HHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEee
Q psy7235 222 VTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVND 280 (305)
Q Consensus 222 Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~ 280 (305)
||+|+||++.|++++|+||+++|+.+.....|.++++|.+.+ || .+++.+|+|.+
T Consensus 130 vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~l-kG---~~~~~~y~~~~ 184 (184)
T PF00211_consen 130 VNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVEL-KG---KGPVQTYQLNG 184 (184)
T ss_dssp HHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEE-TT---SSEEEEEEEE-
T ss_pred hhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEE-ec---CCCcEEEEEEC
Confidence 999999999999999999999999999434899999999999 88 57889999864
No 3
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=100.00 E-value=6.8e-36 Score=257.21 Aligned_cols=184 Identities=42% Similarity=0.694 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhcCC-cccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEE
Q psy7235 35 ERETNVSLLHMIFPPDIAKRLWLGE-SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYK 113 (305)
Q Consensus 35 ~~~~~~~ll~~~lP~~v~~~l~~~~-~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ 113 (305)
|++++.++|.+|+|+++++++..+. .....+.+++||||+||+|||.+++..+++++..++|.++..+.+++..|||++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v 81 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYK 81 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 5778999999999999999999987 567788899999999999999999999999999999999999999999999999
Q ss_pred EeeeCceEEEEeCCCCCC-chHHHHHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCcee
Q psy7235 114 VETIGDAYCVAGGLHKTQ-STHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVF 192 (305)
Q Consensus 114 ik~~Gd~~~~~~g~~~~~-~~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 192 (305)
+++.||++|++||.|... .+++.+|+.+|++++..+..++.... ..++
T Consensus 82 ~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~~-------------------------------~~~l 130 (194)
T smart00044 82 VKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQHR-------------------------------GNGL 130 (194)
T ss_pred EEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc-------------------------------CCCe
Confidence 999999999999999877 49999999999999999887754321 2456
Q ss_pred eEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhC
Q psy7235 193 QMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRN 249 (305)
Q Consensus 193 ~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~ 249 (305)
++|||||+|+|++|.+|..+++|+++|++||.|+||++.+++|+|++|+++++.|++
T Consensus 131 ~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 131 RVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred eEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 699999999999999998878899999999999999999999999999999999964
No 4
>KOG3619|consensus
Probab=100.00 E-value=1.6e-35 Score=295.18 Aligned_cols=229 Identities=28% Similarity=0.486 Sum_probs=202.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc----CCcccccccCcEEEEEEeccCcccccccCC-
Q psy7235 14 LRRRMDKL-KSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWL----GESIEAKTHEHVTMLFSDIVGFTSICSTAT- 87 (305)
Q Consensus 14 l~~~~~~~-~~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~----~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~- 87 (305)
...|++++ +.+..+.+++++..++.|+.||.++||.||+..... +.++|.+.+++|.|||+.|.+|.++..+.+
T Consensus 591 ~~~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~ 670 (867)
T KOG3619|consen 591 YTARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDV 670 (867)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecC
Confidence 44566677 678888889999999999999999999999998742 347788999999999999999988876655
Q ss_pred ---HHhHHHHHHHHHHHHHHhhh--hc-CeEEEeeeCceEEEEeCCCCC-----C-----chHHHHHHHHHHHHHHHhhh
Q psy7235 88 ---PFMVISMLENLYNKFDAFCG--QL-DVYKVETIGDAYCVAGGLHKT-----Q-----STHAQRIAWMALKMIHTCAS 151 (305)
Q Consensus 88 ---~~~~~~~ln~~~~~~~~~v~--~~-~g~~ik~~Gd~~~~~~g~~~~-----~-----~~~a~~a~~~Al~i~~~~~~ 151 (305)
..+..++||++++.||+++. +| +.++||++|-+|||+.|+... . ..|....+.+|++|...+..
T Consensus 671 NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~ 750 (867)
T KOG3619|consen 671 NNEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDE 750 (867)
T ss_pred CcccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHh
Confidence 46899999999999999997 44 699999999999999998532 1 25777889999999999998
Q ss_pred cccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcC
Q psy7235 152 HSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESG 231 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~ 231 (305)
+|..+ ++.+.+||||+.|||++|++|.+||+||+||++||+|+||+++
T Consensus 751 IN~~S--------------------------------fNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdST 798 (867)
T KOG3619|consen 751 INRHS--------------------------------FNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDST 798 (867)
T ss_pred hhHHh--------------------------------hccceeeeceeccceeeeEecCCCCCccccccchhhhhccccc
Confidence 87554 4556699999999999999999999999999999999999999
Q ss_pred CCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEe
Q psy7235 232 SEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVN 279 (305)
Q Consensus 232 a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~ 279 (305)
+.+|.|+||++|+.+|.. .+|.|..+|.+.| || ++++.||++.
T Consensus 799 Gv~g~IQVTEEt~~iL~~-~gy~~~~RG~i~V-KG---kGel~Tyfl~ 841 (867)
T KOG3619|consen 799 GVPGRIQVTEETANILQG-LGYRFECRGVINV-KG---KGELETYFLC 841 (867)
T ss_pred CCCCeEEecHHHHHHHhc-CCeeEEecceEEE-ec---ccceeEEEec
Confidence 999999999999999997 6999999999999 99 4999999998
No 5
>KOG1023|consensus
Probab=100.00 E-value=7.7e-36 Score=284.41 Aligned_cols=243 Identities=38% Similarity=0.613 Sum_probs=217.3
Q ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCccccccc
Q psy7235 10 LTDGLRRRMDKLK----SSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICST 85 (305)
Q Consensus 10 ~~~~l~~~~~~~~----~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft~l~~~ 85 (305)
+.+.|.+.++... ..+++...++..++.+...||.++||+.|++.++.|....++.++++|++|.||++||.++..
T Consensus 234 l~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~l~~~ 313 (484)
T KOG1023|consen 234 LMDSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKTVDPESFDSVTIYFSDIVGFTVLSSN 313 (484)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCcCCccccCceeeeeHHHHHHHHHHhc
Confidence 4455555555553 346677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q psy7235 86 ATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQS-THAQRIAWMALKMIHTCASHSTHDGKPIKLRV 164 (305)
Q Consensus 86 ~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~-~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~ 164 (305)
.+|-+++.++|++++.||.++++|+++++.++||+||++.|+|.... .|+..++..++.+...+..+..++-.
T Consensus 314 ~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P------ 387 (484)
T KOG1023|consen 314 STPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRP------ 387 (484)
T ss_pred CCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCC------
Confidence 99999999999999999999999999999999999999999996544 59999999999999999988765432
Q ss_pred hhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHH
Q psy7235 165 STLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTY 244 (305)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~ 244 (305)
+..+++|||+|+|++.+|++|.+.|+|+.|||+||+|+||++.+. +.|++|++++
T Consensus 388 ------------------------~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~ 442 (484)
T KOG1023|consen 388 ------------------------WEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAK 442 (484)
T ss_pred ------------------------chhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHH
Confidence 233559999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCCCCC
Q psy7235 245 ECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLP 287 (305)
Q Consensus 245 ~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~~~ 287 (305)
..|...++|..+.+|.+.+ || ++.+.|||+.+.+....+
T Consensus 443 ~~l~~~~~~~~e~rG~v~~-kg---kg~~~t~wl~g~~~~~~~ 481 (484)
T KOG1023|consen 443 NLLTERPQFETEERGLVEL-KG---KGVMSTYWLLGESSKSRS 481 (484)
T ss_pred HHHHhcCceeeeccCcEEe-ec---CceeeeEEeccCcccccc
Confidence 9998666899999999999 87 788899999887665443
No 6
>KOG3619|consensus
Probab=100.00 E-value=1.1e-35 Score=296.51 Aligned_cols=245 Identities=26% Similarity=0.466 Sum_probs=217.9
Q ss_pred ccCCcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--------------CcccccccC
Q psy7235 3 LSSPGSKLTDGLRRRMDKL-KSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWLG--------------ESIEAKTHE 67 (305)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~~--------------~~~~~~~~~ 67 (305)
++|-..+...+.+.|-..+ +.+.-+.+-.++.++++.+++|.+.+|.+++..++.. +..+.+.++
T Consensus 32 l~G~~~~~~~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~ 111 (867)
T KOG3619|consen 32 LVGIFTKYMMERAQRQAFLETRKCIEVRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHD 111 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeecc
Confidence 3455566677777777777 3456667778999999999999999999999988642 245667889
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIH 147 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~ 147 (305)
+|+|+|+||+|||.+++.+++++++.+||+.|..||+++..+.|..+|+.||+|.|+.|+|...++||..+++++++|++
T Consensus 112 nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~ 191 (867)
T KOG3619|consen 112 NVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIK 191 (867)
T ss_pred chHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHH
Q psy7235 148 TCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANK 227 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aar 227 (305)
.++.++...+.++. +|||||+|+|+||++|.+|++||+||+.|.+|.+
T Consensus 192 aI~~vr~at~~dvn--------------------------------mrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~ 239 (867)
T KOG3619|consen 192 AIKQVREATGVDVN--------------------------------MRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANH 239 (867)
T ss_pred HHHHHHHHhCCCCc--------------------------------eEEEEecCceeecccccceeeeeeccchhhhhhh
Confidence 99999999998888 9999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecC
Q psy7235 228 FESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYR 282 (305)
Q Consensus 228 l~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~ 282 (305)
||+.+.||.|+||+.|.+.|.. .|.+++.....- +-+.+..++.||++....
T Consensus 240 mEs~G~pgrVhis~~Tl~~L~g--~yeve~g~g~~r-~~~l~~~~~~ty~i~~~~ 291 (867)
T KOG3619|consen 240 MEAGGVPGRVHISKATLDCLNG--EYEVEPGHGGER-DPYLKEHGIETYLIIPPS 291 (867)
T ss_pred hhhcCCCceeEechhHHHHhCC--CceeecCCCccc-chHHHhcCCceEEecccc
Confidence 9999999999999999999998 788887654322 445567788999997653
No 7
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-32 Score=239.94 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=161.4
Q ss_pred HHHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeC
Q psy7235 39 NVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIG 118 (305)
Q Consensus 39 ~~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~G 118 (305)
....+..+++..+...+..+. .. . +.+||||+||+|||.+++..+++++..++|.+|..+..++.+|||.++|++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~--~-~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iG 96 (227)
T COG2114 21 SDLVLRLYLARVVGRLLARGG-AG--D-RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIG 96 (227)
T ss_pred hhHHHHHHhhhccchhhcccc-cc--C-ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 334556666666666665544 11 1 7999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHH-HHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEE
Q psy7235 119 DAYCVAGGLHKTQSTHAQRIAW-MALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIG 197 (305)
Q Consensus 119 d~~~~~~g~~~~~~~~a~~a~~-~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIG 197 (305)
|++|+.||.|.+.. ++..|+. +++++.....+...+. +++|||
T Consensus 97 D~~la~F~~p~~~~-~A~~~a~~~~~~~~~~~~~~~~~~-----------------------------------l~~riG 140 (227)
T COG2114 97 DGFLAVFGRPSPLE-DAVACALDLQLALRNPLARLRRES-----------------------------------LRVRIG 140 (227)
T ss_pred ceEEEEeCCCCCcH-HHHHHHHHHHHHHHHHHhhccCcC-----------------------------------eeEEEE
Confidence 99999999998766 3333333 4445555544443321 459999
Q ss_pred EeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEE
Q psy7235 198 LHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYF 277 (305)
Q Consensus 198 Ih~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~ 277 (305)
||+|+|++|.+|. ||++|++||+|+||++.|+|++|++|++|++.+.. ....+...|...+ || ...+..+|.
T Consensus 141 i~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~-~~~~~~~~g~~~l-kg--~~~~~~v~~ 212 (227)
T COG2114 141 IHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRD-LVDLFSGLGSHRL-KG--LARPVRVYQ 212 (227)
T ss_pred EEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhh-hhhhhhcCCceec-CC--CCCceEEEE
Confidence 9999999999988 99999999999999999999999999999999993 2688889999999 99 556777898
Q ss_pred EeecCC
Q psy7235 278 VNDYRH 283 (305)
Q Consensus 278 v~~~~~ 283 (305)
+.....
T Consensus 213 ~~~~~~ 218 (227)
T COG2114 213 LCHRSL 218 (227)
T ss_pred eccccc
Confidence 876544
No 8
>KOG3618|consensus
Probab=100.00 E-value=1.1e-32 Score=264.93 Aligned_cols=243 Identities=26% Similarity=0.479 Sum_probs=201.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc-CCc-----------------------------
Q psy7235 12 DGLRRRMDKLK-SSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWL-GES----------------------------- 60 (305)
Q Consensus 12 ~~l~~~~~~~~-~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~-~~~----------------------------- 60 (305)
.+.|.|--+++ .+--..+.+++.|++--++++.+.+|+.|++.|.+ +..
T Consensus 250 ~qVR~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~ 329 (1318)
T KOG3618|consen 250 SQVRSRSTFLKVGQSILHRKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIA 329 (1318)
T ss_pred HHHHhhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccc
Confidence 34455555554 23333466788889999999999999999998864 210
Q ss_pred ---ccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHH
Q psy7235 61 ---IEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQR 137 (305)
Q Consensus 61 ---~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~ 137 (305)
.......+|+|||+||+|||.+++..++++++.+||++|..||++++-.||++|.+.||||.|+.|.|.+..+||.+
T Consensus 330 FRPF~M~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~c 409 (1318)
T KOG3618|consen 330 FRPFKMQQMENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYC 409 (1318)
T ss_pred cCchhhhhhhhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcccceee
Confidence 01124468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEE
Q psy7235 138 IAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCL 217 (305)
Q Consensus 138 a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v 217 (305)
+++++|.|+.+++++....+.-+. +|+|||||.|+||.+|.++..||+
T Consensus 410 cvEMGLgMI~AirqFd~~r~e~Vn--------------------------------MRVGvHTGtVlCGivGtrRfKFDV 457 (1318)
T KOG3618|consen 410 CVEMGLGMIKAIRQFDQERKEMVN--------------------------------MRVGVHTGTVLCGIVGTRRFKFDV 457 (1318)
T ss_pred ehhhcchHHHHHHHHHHHhhcccc--------------------------------eEEEEecceEEeeeeecceEeeee
Confidence 999999999999999876655555 999999999999999999999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCc------eeeccCCC---CCCcceeEEEEeecCCCCCCC
Q psy7235 218 FGHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRS------RELLPKGF---PENIPGICYFVNDYRHPSLPS 288 (305)
Q Consensus 218 ~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g------~~~~~kG~---~~~~~~~~y~v~~~~~~~~~~ 288 (305)
|.+.||+|..||+.+.+|+||||++|.+.|.+ .|..++.. ...+ .|- .+|+.+.||++.+..+.+...
T Consensus 458 wSNDV~LAN~MEssGvag~VHiSeaTak~L~d--~Ye~EeG~~~~g~~~~~V-~g~~rRtnP~t~kt~li~G~~gas~~e 534 (1318)
T KOG3618|consen 458 WSNDVNLANLMESSGVAGKVHISEATAKYLDD--RYEMEEGKVIEGLGQSVV-AGQLRRTNPGTLKTYLISGQRGASAKE 534 (1318)
T ss_pred ccCcchHHHHHHhcCCCcceEeeHHHHHHhcc--cceeccCccccccceeEE-eceeeecCCcccceEEecCccccchhh
Confidence 99999999999999999999999999999998 67666542 2222 221 135667899998876555443
Q ss_pred C
Q psy7235 289 E 289 (305)
Q Consensus 289 ~ 289 (305)
.
T Consensus 535 s 535 (1318)
T KOG3618|consen 535 S 535 (1318)
T ss_pred h
Confidence 3
No 9
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=100.00 E-value=4.4e-31 Score=221.88 Aligned_cols=177 Identities=35% Similarity=0.526 Sum_probs=161.4
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIH 147 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~ 147 (305)
++||||+||+|||.+.+..+++++..+++.++..+++++..|+|++.++.||+++++|+.+...++++.+|++||++|++
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~ 80 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQE 80 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHH
Q psy7235 148 TCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANK 227 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aar 227 (305)
.+...+... .....+++|||||+|++++|.+|..+++|+++|++||+|+|
T Consensus 81 ~~~~~~~~~------------------------------~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~r 130 (177)
T cd07302 81 ALAELNAER------------------------------EGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAAR 130 (177)
T ss_pred HHHHHhhcc------------------------------cCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHH
Confidence 999876542 11244669999999999999999887789999999999999
Q ss_pred HhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEE
Q psy7235 228 FESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFV 278 (305)
Q Consensus 228 l~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v 278 (305)
|++.|++++|++|+++++.+... .|.+.+.+...+ || ...++++|.+
T Consensus 131 l~~~a~~~~i~vs~~~~~~l~~~-~~~~~~~~~~~l-~~--~~~~~~~y~~ 177 (177)
T cd07302 131 LESLAKPGQILVSEATYELLGDA-GFEFEELGEVEL-KG--KSGPVRVYRL 177 (177)
T ss_pred HHhcCCCCEEEECHHHHHhhccC-ceEEEEeCCEEe-cC--CCCceEEEEC
Confidence 99999999999999999999863 799999999999 88 4467788864
No 10
>KOG3618|consensus
Probab=99.96 E-value=5.8e-30 Score=246.27 Aligned_cols=223 Identities=24% Similarity=0.384 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCccccccc--CCHHhHHHHHHHHHHHH
Q psy7235 25 IEEANQAVDQERETNVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICST--ATPFMVISMLENLYNKF 102 (305)
Q Consensus 25 i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft~l~~~--~~~~~~~~~ln~~~~~~ 102 (305)
....+.++...|.+..=||.+++|.|+++.|+... .|.+.++++.|+|+.|++|.++.++ ....++.++||+++..|
T Consensus 1041 A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~-kYSeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDF 1119 (1318)
T KOG3618|consen 1041 ADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQ-KYSENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDF 1119 (1318)
T ss_pred hchhHHHHHHHHHHHHHHHhccchHHHHHHhhccc-cccccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccH
Confidence 34456677777788888999999999999998654 4678889999999999999999875 35899999999999999
Q ss_pred HHhhhhc---CeEEEeeeCceEEEEeCCCCC-------CchHHHHHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhh
Q psy7235 103 DAFCGQL---DVYKVETIGDAYCVAGGLHKT-------QSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRV 172 (305)
Q Consensus 103 ~~~v~~~---~g~~ik~~Gd~~~~~~g~~~~-------~~~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (305)
|+++.+- ..++||++|-+|||+.|+.+. ...|.....++|++|++.+..+|+..
T Consensus 1120 DELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~dl---------------- 1183 (1318)
T KOG3618|consen 1120 DELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNNDL---------------- 1183 (1318)
T ss_pred HHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhhh----------------
Confidence 9999764 399999999999999999643 24578889999999999999887532
Q ss_pred hhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCC
Q psy7235 173 LRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRNTEH 252 (305)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~ 252 (305)
.+..|.+|||.+.|+|.+|+||+.|.-||+|||+||+|+||.+++.++.|+||++++..|.+ .
T Consensus 1184 ---------------L~Fnf~lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~--r 1246 (1318)
T KOG3618|consen 1184 ---------------LWFNFKLRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSK--R 1246 (1318)
T ss_pred ---------------hheeeeEEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHh--h
Confidence 23456699999999999999999999999999999999999999999999999999999998 7
Q ss_pred eEEEeCceeeccCCCCCCcceeEEEEeecCCCC
Q psy7235 253 FTFEPRSRELLPKGFPENIPGICYFVNDYRHPS 285 (305)
Q Consensus 253 ~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~ 285 (305)
|+|+++|.+.+ || +..|.||.....++..
T Consensus 1247 YeFe~Rg~v~V-KG---kd~M~tyLy~~r~d~~ 1275 (1318)
T KOG3618|consen 1247 YEFEYRGTVNV-KG---KDQMKTYLYPKRTDHR 1275 (1318)
T ss_pred ccccccceEEE-ec---cCcceeEEeccccCCC
Confidence 99999999999 99 3489999987776653
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.48 E-value=1.9e-12 Score=103.12 Aligned_cols=132 Identities=34% Similarity=0.573 Sum_probs=113.2
Q ss_pred EEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q psy7235 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHT 148 (305)
Q Consensus 69 vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~~ 148 (305)
++++++||.+|+.+.+.++.+...+++..+...+.+++..+++.+.++.||.++++|.. ....++..++..+...
T Consensus 2 ~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~-----~~~~~~~~~~~~i~~~ 76 (133)
T cd07556 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMREA 76 (133)
T ss_pred EEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc-----hHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998999999999999999843 4556788888888887
Q ss_pred hhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHH
Q psy7235 149 CASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKF 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl 228 (305)
+........ ..++++||+++|++..+..|. ++.++.+|+.+|.|+++
T Consensus 77 ~~~~~~~~~--------------------------------~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a 123 (133)
T cd07556 77 VSALNQSEG--------------------------------NPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRM 123 (133)
T ss_pred HHHHHhccC--------------------------------CceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHH
Confidence 765432211 234599999999999998888 67789999999999999
Q ss_pred hcCCCCCcEE
Q psy7235 229 ESGSEPLRIN 238 (305)
Q Consensus 229 ~~~a~~~~I~ 238 (305)
+..+++++|+
T Consensus 124 ~~~a~~~~i~ 133 (133)
T cd07556 124 ESQAKAGQVL 133 (133)
T ss_pred HhcCCCCCcC
Confidence 9999998773
No 12
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=96.10 E-value=0.093 Score=46.44 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=49.3
Q ss_pred cCcEEEEEEeccCcc-cccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 66 HEHVTMLFSDIVGFT-SICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft-~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
-..|+|...||.++| .++...++-+....+.+++..+.+.+..+||----.-||-+|+++
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~ 185 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVC 185 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-
T ss_pred CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEEC
Confidence 357899999999999 999999999999999999999999999999887777799999998
No 13
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=95.50 E-value=0.77 Score=43.57 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=55.1
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++|+.+|..+.+.++.+..-++|..+-..+...+..+ ..+-++-||.+.+++.-.. ....+...+-.+.
T Consensus 277 ~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~~-~~~~R~~~deF~ill~~~~----~~~~~~~~~~~i~ 351 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLR-HKAYRLGGDEFAMVLYDVQ----SESEVQQICSALT 351 (407)
T ss_pred CceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCCC-CEEEEEccceEEEEEcCCC----CHHHHHHHHHHHH
Confidence 3468999999999999999988877777777777777666543 5567888999988873211 1223444455555
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 352 ~~~~~ 356 (407)
T PRK09966 352 QIFNL 356 (407)
T ss_pred HHHhC
Confidence 54443
No 14
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=95.18 E-value=0.22 Score=39.89 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=62.3
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...++++++|.+|..+....+.+..-.++..+...+...+.. +..+.++.+|.+++++ |....+.+....+.+..+.
T Consensus 31 ~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~--~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF00990_consen 31 EPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLGDDEFAILL--PDTDSEEAEELAERLERLI 107 (161)
T ss_dssp SEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEETTEEEEEE--ETCTHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccccccccccccccccccccccccccccccc-ccccccccchheeecc--cccccccchhhhhhhhhhh
Confidence 568999999999999999888888888888888888887776 6677788899998876 3333344556666666666
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 108 ~~~~~ 112 (161)
T PF00990_consen 108 DELNE 112 (161)
T ss_dssp HHHCC
T ss_pred hhccc
Confidence 55544
No 15
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=94.95 E-value=0.55 Score=44.38 Aligned_cols=81 Identities=17% Similarity=0.042 Sum_probs=58.6
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+.--++|..+-..+...+.. +..+-++-||.+.++.. ... ...+...+-.+.
T Consensus 235 ~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~-~d~laRlggdeFavll~--~~~---~~~a~~~~~rl~ 308 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMS--GTP---AESAITAMSRVH 308 (366)
T ss_pred CCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCC-CCEEEEEcCcEEEEEeC--CCC---HHHHHHHHHHHH
Confidence 457999999999999999988777777777877777777754 45677889999988873 222 234445555666
Q ss_pred HHhhhcc
Q psy7235 147 HTCASHS 153 (305)
Q Consensus 147 ~~~~~~~ 153 (305)
+.++...
T Consensus 309 ~~l~~~~ 315 (366)
T PRK10245 309 EGLNTLR 315 (366)
T ss_pred HHHhhcc
Confidence 6665543
No 16
>PRK11059 regulatory protein CsrD; Provisional
Probab=94.81 E-value=1.4 Score=44.87 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=61.2
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhc-CeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQL-DVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~-~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
..+++++||.+|..+.+.++....-.+|..+-..+...+..+ +..+-++-||.+.++. |.. +...+...|-.+.
T Consensus 259 ~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~~~~~~~~~aR~ggdeFaill--~~~---~~~~a~~~a~~l~ 333 (640)
T PRK11059 259 HGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFVMRYPGALLARYSRSDFAVLL--PHR---SLKEADSLASQLL 333 (640)
T ss_pred cEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEe--CCC---ChHHHHHHHHHHH
Confidence 578999999999999999998888788888888888888765 4667788999998886 322 2345556666666
Q ss_pred HHhhhcc
Q psy7235 147 HTCASHS 153 (305)
Q Consensus 147 ~~~~~~~ 153 (305)
..+....
T Consensus 334 ~~i~~~~ 340 (640)
T PRK11059 334 KAVDALP 340 (640)
T ss_pred HHHHhcc
Confidence 6666543
No 17
>PRK09894 diguanylate cyclase; Provisional
Probab=94.79 E-value=0.87 Score=41.04 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=55.7
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
..++++++||.+|..+.+.++....-.+|..+-..+...+... ..+-++-||.+++++. ... ...+...+-.+.
T Consensus 157 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~-~~~~R~~g~~F~ill~--~~~---~~~~~~~~~~l~ 230 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDY-ETVYRYGGEEFIICLK--AAT---DEEACRAGERIR 230 (296)
T ss_pred CcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCC-CEEEEEcCCeEEEEeC--CCC---HHHHHHHHHHHH
Confidence 4589999999999999999988877778888888777777553 4667888999988863 222 223444455555
Q ss_pred HHhh
Q psy7235 147 HTCA 150 (305)
Q Consensus 147 ~~~~ 150 (305)
..+.
T Consensus 231 ~~~~ 234 (296)
T PRK09894 231 QLIA 234 (296)
T ss_pred HHHH
Confidence 5444
No 18
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=94.32 E-value=0.94 Score=35.87 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=56.6
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIH 147 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~ 147 (305)
.++++.++|.+|..+....+.+..-.++..+...+...+.. +..+.+..+|.+++++.. .. ...+...+..+..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~~--~~---~~~~~~~~~~l~~ 107 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPE--TS---LEEAIALAERILQ 107 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCC-CCEEEEecCceEEEEecC--CC---HHHHHHHHHHHHH
Confidence 47899999999999999999888888888888888887766 456677788888888732 11 2233444455555
Q ss_pred Hhhh
Q psy7235 148 TCAS 151 (305)
Q Consensus 148 ~~~~ 151 (305)
.+..
T Consensus 108 ~~~~ 111 (163)
T smart00267 108 QLRE 111 (163)
T ss_pred HHhC
Confidence 4443
No 19
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=94.27 E-value=1.4 Score=36.58 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=57.6
Q ss_pred cCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHH
Q psy7235 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKM 145 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i 145 (305)
....+++++||.+|..+.+.++-..--.+|..+...+...+...+ .+-++-||.+.+++.... ...+...|-.+
T Consensus 49 ~~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~gGdEF~i~l~~~~-----~~~~~~~~~~l 122 (181)
T COG2199 49 GEPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLGGDEFAVLLPGTS-----LEEAARLAERI 122 (181)
T ss_pred CCCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEeccceeEEEeCCCC-----HHHHHHHHHHH
Confidence 356899999999999988888876666677777777777776655 788889999999884322 44455555555
Q ss_pred HHHhhh
Q psy7235 146 IHTCAS 151 (305)
Q Consensus 146 ~~~~~~ 151 (305)
...+..
T Consensus 123 ~~~~~~ 128 (181)
T COG2199 123 RAALEE 128 (181)
T ss_pred HHHHHc
Confidence 444443
No 20
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=94.17 E-value=0.87 Score=43.95 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=54.5
Q ss_pred cCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHH
Q psy7235 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKM 145 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i 145 (305)
.+..+++++||.+|-.+...+.-.--=++|..+-..+.+.+ +.--.+-++-|+.+++++. ..+...|+..|-.|
T Consensus 299 ~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~~v-r~~Dl~aRyGGEEF~vvlp-----~t~~~~Ai~iaerI 372 (435)
T COG3706 299 GRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTV-RGLDLVARYGGEEFAVVLP-----DTDLEAAIAIAERI 372 (435)
T ss_pred CCCeeEEEEecccccccccccCCccHHHHHHHHHHHHHhhc-cccccceecCCeeEEEEec-----CCCHHHHHHHHHHH
Confidence 45789999999999999888764433334444445555544 3334555666777888772 23366777777777
Q ss_pred HHHhhhccc
Q psy7235 146 IHTCASHST 154 (305)
Q Consensus 146 ~~~~~~~~~ 154 (305)
+..++....
T Consensus 373 r~~i~~~~~ 381 (435)
T COG3706 373 RQKINELPF 381 (435)
T ss_pred HHHHhcCCc
Confidence 777776544
No 21
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.69 Score=40.31 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=54.8
Q ss_pred CcEEEEEEeccCcc-cccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCC
Q psy7235 67 EHVTMLFSDIVGFT-SICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGL 127 (305)
Q Consensus 67 ~~vtvlf~DI~~ft-~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~ 127 (305)
..+.|...||.+.| .++...+|-+....++..+..+.+.+.++|+-.--.-||-+|+++..
T Consensus 130 g~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p~ 191 (250)
T COG2429 130 GYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCPG 191 (250)
T ss_pred CceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECCC
Confidence 46899999999999 88999999999999999999999999999988777779999999843
No 22
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=92.83 E-value=2.9 Score=42.44 Aligned_cols=80 Identities=8% Similarity=0.124 Sum_probs=56.9
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++.||.+.+++.- .++...+...|-.+.
T Consensus 261 ~~~~l~~idid~f~~in~~~G~~~gD~lL~~va~~l~~~~~~-~~~~aRl~gdeF~vl~~~----~~~~~~~~~~~~~i~ 335 (660)
T PRK11829 261 DHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDD-SDLLAQLSKTEFAVLARG----TRRSFPAMQLARRIM 335 (660)
T ss_pred CCEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEEcC----CCCHHHHHHHHHHHH
Confidence 357899999999999999998877777777777777776654 356778899999888732 112234555566666
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 336 ~~~~~ 340 (660)
T PRK11829 336 SQVTQ 340 (660)
T ss_pred HHhcC
Confidence 55543
No 23
>PRK13561 putative diguanylate cyclase; Provisional
Probab=92.64 E-value=3.5 Score=41.80 Aligned_cols=79 Identities=5% Similarity=0.045 Sum_probs=56.5
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+... ..+-+.-||.+.+++.- . +....+...+-.+.
T Consensus 257 ~~~~l~~idld~f~~in~~~G~~~gD~lL~~ia~~L~~~~~~~-~~~aRl~gdeF~ill~~--~--~~~~~~~~~~~~i~ 331 (651)
T PRK13561 257 QTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPR-MVLAQISGYDFAIIANG--V--KEPWHAITLGQQVL 331 (651)
T ss_pred CCeEEEEEECCchHHHHHhhChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeCCEEEEEECC--C--CCHHHHHHHHHHHH
Confidence 4679999999999999999888877778888888887777643 56788899999888722 1 11223444455555
Q ss_pred HHhh
Q psy7235 147 HTCA 150 (305)
Q Consensus 147 ~~~~ 150 (305)
..+.
T Consensus 332 ~~~~ 335 (651)
T PRK13561 332 TIIN 335 (651)
T ss_pred HHHc
Confidence 5444
No 24
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=92.26 E-value=2.4 Score=33.23 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=47.4
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
...++++++|.+|..+....+.+..-.++..+...+...+.. +..+..+.++.++++.
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~ 87 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRE-SDLVARLGGDEFAILL 87 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEe
Confidence 357899999999999999999888888888888888887765 4556666778888777
No 25
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=91.24 E-value=2.8 Score=37.41 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=49.0
Q ss_pred cCcEEEEEEeccCcccccc-cCCHHhHHHHHHHHHHHHHHhhhh-cCeEEEeeeCceEEEEe
Q psy7235 66 HEHVTMLFSDIVGFTSICS-TATPFMVISMLENLYNKFDAFCGQ-LDVYKVETIGDAYCVAG 125 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~-~~~~~~~~~~ln~~~~~~~~~v~~-~~g~~ik~~Gd~~~~~~ 125 (305)
-..|+|+..||.++|.... ..+|-+....+++.+..+-+.+.+ +|+----.=||-+|++|
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~GGDN~~~~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVGGDNFMAPC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEecCceEEEEC
Confidence 4579999999999998754 557888877788888888788877 88876666799999998
No 26
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=90.61 E-value=2.5 Score=41.61 Aligned_cols=79 Identities=11% Similarity=-0.097 Sum_probs=62.8
Q ss_pred CcEEEEEEeccCcccccccC------------------C---HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 67 EHVTMLFSDIVGFTSICSTA------------------T---PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~------------------~---~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
.-.+|+.+|-.+.-.+.+.. + ...+.+.|+.|+......+..++|.++-.=||-++++.
T Consensus 342 ~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~~g~~VYaGGDDvlai~ 421 (482)
T TIGR02577 342 PYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNEHGELVYAGGDDVLALL 421 (482)
T ss_pred ceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCcEEEEc
Confidence 45799999999887776642 2 25667778888888888888888999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhcc
Q psy7235 126 GLHKTQSTHAQRIAWMALKMIHTCASHS 153 (305)
Q Consensus 126 g~~~~~~~~a~~a~~~Al~i~~~~~~~~ 153 (305)
.+..|+.+|.++.+...+..
T Consensus 422 --------p~~~al~~a~~l~~~F~~~~ 441 (482)
T TIGR02577 422 --------PVDTALDVAKELRKEFRESL 441 (482)
T ss_pred --------cHHHHHHHHHHHHHHHHHHh
Confidence 35568888998888877654
No 27
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=89.50 E-value=2.6 Score=44.25 Aligned_cols=159 Identities=7% Similarity=-0.028 Sum_probs=94.9
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIH 147 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~ 147 (305)
..++..+.|.+|.+.....+..+...+...+-+.+.+.+..|++..-++..|.|++++. ...-....+-=..+.+
T Consensus 204 ~~v~g~i~iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~~~~~~~~r~~~~dry~~~~~-----~~~l~~~~~~kF~iLd 278 (838)
T PRK14538 204 TLALAMITFDNLEESLIRYDLSEQSQIQGEYLSALSDFIEPYEGYLKQLIDDRFLLLIN-----RQNLDKMIENKFSILD 278 (838)
T ss_pred CcEEEEEEeeCHHHHhcccchHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCcEEEEEE-----HHHHHHHHHhCCcHHH
Confidence 34566666778888888887788788888888889999999999999999999999983 2444444454456666
Q ss_pred HhhhcccCCCCccc----hhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEE----EeeceE----------------
Q psy7235 148 TCASHSTHDGKPIK----LRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIG----LHTGTV---------------- 203 (305)
Q Consensus 148 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIG----Ih~G~v---------------- 203 (305)
.+++.......++. +-++..........+.....-...|++ .+.-++-+ -.+|--
T Consensus 279 ~ir~~~~~~~~~vTLSiGig~g~~~~~e~~~~A~~aldlAlgRGG-DQvvvk~~~~~~~fyGGks~~~eKrtrVraRvia 357 (838)
T PRK14538 279 TIRNISHKYQLKVTLSMGIACWNLSYDKLATYSQNAIELAQKRGG-DQAVVNIENEKIKYFGAKIASLSKQSKVNARVNA 357 (838)
T ss_pred HHHHhhcCCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC-CEEEEEcCCCCceEeCCCCCcccchhhHHHHHHH
Confidence 66665443333322 111222222222223333333334443 22233321 012210
Q ss_pred -----------EEEeecCCCcceEEeCchHHHHHHHhcCC
Q psy7235 204 -----------LAGVVGVKMPRYCLFGHNVTVANKFESGS 232 (305)
Q Consensus 204 -----------~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a 232 (305)
-+-++|+..|++|.+|.++-++.-+....
T Consensus 358 ~~L~elI~~~d~ViI~gH~nPD~DAlGSalaL~~~lk~l~ 397 (838)
T PRK14538 358 QNLVDILKKNPHCFIMGHNHTDLDSLGSMIAFYKIALTIH 397 (838)
T ss_pred HHHHHHHhcCCeEEEEecCCCCchHHHHHHHHHHHHHHhC
Confidence 02246777888999999997777666554
No 28
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=88.82 E-value=5.8 Score=39.38 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=57.1
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+.--.+|..+-..+...+.. +..+-++-||.|+++... .. ...+...+-.+.
T Consensus 428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~-~~~~~R~ggdeF~ill~~--~~---~~~~~~~~~~l~ 501 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRA-QDVAGRVGGEEFCVVLPG--AS---LAEAAQVAERIR 501 (570)
T ss_pred CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEeecCcEEEEEeCC--CC---HHHHHHHHHHHH
Confidence 457899999999999999998888878888888888877764 456778899999888632 22 233444455555
Q ss_pred HHhh
Q psy7235 147 HTCA 150 (305)
Q Consensus 147 ~~~~ 150 (305)
..+.
T Consensus 502 ~~~~ 505 (570)
T PRK15426 502 LRIN 505 (570)
T ss_pred HHHh
Confidence 5544
No 29
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=88.08 E-value=4.5 Score=40.31 Aligned_cols=87 Identities=3% Similarity=0.101 Sum_probs=59.4
Q ss_pred EEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHHHh
Q psy7235 70 TMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTC 149 (305)
Q Consensus 70 tvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~~~ 149 (305)
++.++.+.+|..+.+.++.++...+-+.+-+.+.+....|+.+.-++.+|.|+++... .--....+-=..+...+
T Consensus 176 vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~-----~~L~~l~~~kF~iLd~~ 250 (655)
T COG3887 176 VLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNY-----KILEKLEEDKFSILDEF 250 (655)
T ss_pred eEEEEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhhhheeecCCeEEEEecH-----HHHHHHHHhhhHHHHHH
Confidence 4556667799999999887777776666667777888899999999999999999843 22333444444555555
Q ss_pred hhcccCCCCccc
Q psy7235 150 ASHSTHDGKPIK 161 (305)
Q Consensus 150 ~~~~~~~~~~~~ 161 (305)
++.....+.++.
T Consensus 251 RE~s~~~~ipLT 262 (655)
T COG3887 251 REESSQKNIPLT 262 (655)
T ss_pred HHHhhccCcceE
Confidence 544433333333
No 30
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=88.00 E-value=11 Score=29.78 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=45.8
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
.++++.++|.+|..+...++....-.++..+...+.+.+.. +..+.++.++.+++++
T Consensus 33 ~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~~-~~~i~r~~~~~f~il~ 89 (165)
T TIGR00254 33 SFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRG-SDVVGRYGGEEFVVIL 89 (165)
T ss_pred ceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcCc-CCEEEEecCCeEEEEe
Confidence 47899999999999999888877777888888888777743 4567777888888876
No 31
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=81.70 E-value=21 Score=27.75 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcC
Q psy7235 187 SHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESG 231 (305)
Q Consensus 187 ~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~ 231 (305)
.....|++++-+|+|++.--.||.-. -++|.+|-.|.||-..
T Consensus 68 ~~~~~LsLKfV~H~Ge~~~~~Vk~~~---kL~G~dVI~aHrlLKN 109 (116)
T PF10851_consen 68 AQLINLSLKFVAHYGEVAQQKVKRFC---KLAGKDVIEAHRLLKN 109 (116)
T ss_pred hhhhcceEEEEEEeeeeeeeeecccc---hhcCchhhHhHHHHcC
Confidence 34566789999999998666666422 4679999999999644
No 32
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=80.13 E-value=19 Score=32.26 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=48.0
Q ss_pred EEEEeccCcccccccCCH---HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 71 MLFSDIVGFTSICSTATP---FMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 71 vlf~DI~~ft~l~~~~~~---~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
|..+.|.||-.+++.+.| .++..+-..++..+.+.+.++||...-+-||-++++.
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavt 61 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAVT 61 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEEc
Confidence 556788999999998876 4567777899999999999999999999999999986
No 33
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=80.07 E-value=16 Score=37.42 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=58.0
Q ss_pred cCcEEEEEEeccCcccccccCC--H------HhHHHHHHHHHHH-HHHhhhhc----CeEEEeeeCceEEEEeCCCCCCc
Q psy7235 66 HEHVTMLFSDIVGFTSICSTAT--P------FMVISMLENLYNK-FDAFCGQL----DVYKVETIGDAYCVAGGLHKTQS 132 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~~~~--~------~~~~~~ln~~~~~-~~~~v~~~----~g~~ik~~Gd~~~~~~g~~~~~~ 132 (305)
..-++||-+|.-+.-.+..... + ..+.+.|+.+|.. +..+++.+ +++++-.-||-+++++.
T Consensus 520 ~~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig~------ 593 (648)
T TIGR02578 520 HKKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIGP------ 593 (648)
T ss_pred CceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEcc------
Confidence 3568999999999766654321 1 3556667776665 44556666 68888888999999973
Q ss_pred hHHHHHHHHHHHHHHHhhhcc
Q psy7235 133 THAQRIAWMALKMIHTCASHS 153 (305)
Q Consensus 133 ~~a~~a~~~Al~i~~~~~~~~ 153 (305)
...++.+|.++++.+.+..
T Consensus 594 --~~~~l~~A~~i~~~F~~~~ 612 (648)
T TIGR02578 594 --WNAVLELASDIREYFEKFT 612 (648)
T ss_pred --HHHHHHHHHHHHHHHHHHh
Confidence 4578889999998887653
No 34
>PRK10060 RNase II stability modulator; Provisional
Probab=79.04 E-value=16 Score=37.30 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=54.0
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...++++.|+.+|..+.+.++...--.+|..+-..+...+.. +..+-++-||.+.+++. .. +...+...+-.+.
T Consensus 265 ~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~d~vaRlggdeF~ill~--~~---~~~~~~~~~~~i~ 338 (663)
T PRK10060 265 NQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEE-DQTLARLGGDEFLVLAS--HT---SQAALEAMASRIL 338 (663)
T ss_pred CcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEc--CC---CHHHHHHHHHHHH
Confidence 457899999999998888887766666777777777666654 35678888999988873 22 2234444555555
Q ss_pred HHhh
Q psy7235 147 HTCA 150 (305)
Q Consensus 147 ~~~~ 150 (305)
+.+.
T Consensus 339 ~~l~ 342 (663)
T PRK10060 339 TRLR 342 (663)
T ss_pred HHcC
Confidence 5543
No 35
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=76.90 E-value=95 Score=32.02 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=47.1
Q ss_pred cCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
....+++++||.+|..+.+.++....-.+|..+-..+...+.. +..+-++-||.++++.
T Consensus 401 ~~~~~l~~i~i~~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~~~~~r~~~~eF~il~ 459 (799)
T PRK11359 401 AVSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNRFREKLKP-DQYLCRIEGTQFVLVS 459 (799)
T ss_pred CCCEEEEEEECCcHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEE
Confidence 3467899999999999999988777777777777777777654 3567788899998876
No 36
>PRK09776 putative diguanylate cyclase; Provisional
Probab=72.64 E-value=29 Score=37.28 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=55.3
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++....-.+|..+-..+...+.. +..+-++-||.+.+++. ... ...+...+-.+.
T Consensus 695 ~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~~~-~~~~~R~~gdeF~vl~~--~~~---~~~~~~~~~~l~ 768 (1092)
T PRK09776 695 QRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRS-SDVLARLGGDEFGLLLP--DCN---VESARFIATRII 768 (1092)
T ss_pred CcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhCCC-cCEEEEecCcEEEEEeC--CCC---hHHHHHHHHHHH
Confidence 458999999999999999888777777777777777666654 34677888999988863 222 233444555555
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
+.++.
T Consensus 769 ~~~~~ 773 (1092)
T PRK09776 769 SAIND 773 (1092)
T ss_pred HHHhh
Confidence 55543
No 37
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=70.76 E-value=70 Score=30.37 Aligned_cols=56 Identities=14% Similarity=-0.109 Sum_probs=29.8
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEE--eeeCceEEEEe
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKV--ETIGDAYCVAG 125 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~i--k~~Gd~~~~~~ 125 (305)
+.=.|+.+||+++|...+.=-=+++--+=...+..+..++ ++.-+ -|=||+-.++.
T Consensus 25 ddW~v~vaDIv~ST~AIa~GrYK~VNm~Ga~~IaAv~N~~---~~~~~PFvFGGDGA~~~v 82 (373)
T PF11294_consen 25 DDWFVGVADIVNSTKAIAAGRYKDVNMAGAAVIAAVLNAL---GGRDFPFVFGGDGATFAV 82 (373)
T ss_pred CCcEEEEeehhccHHHHHcCCcccchHHHHHHHHHHHhcc---cCCCCCeEecCCCeEEec
Confidence 4458999999999988765222222111122223333333 32222 24588877665
No 38
>PRK14163 heat shock protein GrpE; Provisional
Probab=61.69 E-value=69 Score=27.96 Aligned_cols=31 Identities=6% Similarity=0.310 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 91 VISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 91 ~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
+..-++.++..|..++.+||...+...|+-|
T Consensus 112 l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~F 142 (214)
T PRK14163 112 LVGGFKSVAESLETTVAKLGLQQFGKEGEPF 142 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 6667889999999999999999998888744
No 39
>PRK14139 heat shock protein GrpE; Provisional
Probab=52.50 E-value=1.4e+02 Score=25.35 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
...+..-+..++..|..++.+||...+...|+-|
T Consensus 106 ~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~F 139 (185)
T PRK14139 106 LEKLREGVELTLKQLTSAFEKGRVVEINPVGEKF 139 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCC
Confidence 3557777889999999999999999988888743
No 40
>PRK14147 heat shock protein GrpE; Provisional
Probab=52.03 E-value=1.4e+02 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
..+..-+..++..|..++..+|...+...|+.|
T Consensus 93 ~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~F 125 (172)
T PRK14147 93 SPLRDGLELTYKQLLKVAADNGLTLLDPVGQPF 125 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 456777889999999999999999998888743
No 41
>PRK14157 heat shock protein GrpE; Provisional
Probab=49.45 E-value=97 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhcCeEEEeeeCce
Q psy7235 96 ENLYNKFDAFCGQLDVYKVETIGDA 120 (305)
Q Consensus 96 n~~~~~~~~~v~~~~g~~ik~~Gd~ 120 (305)
..++..|..++.+||...|...|+-
T Consensus 154 ~~i~k~l~~vL~k~GVe~I~~~Ge~ 178 (227)
T PRK14157 154 KAVAAKIDKAFEKFGVEKFGEKGED 178 (227)
T ss_pred HHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 3467889999999999998877764
No 42
>PRK14140 heat shock protein GrpE; Provisional
Probab=43.67 E-value=2.1e+02 Score=24.51 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCc
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGD 119 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd 119 (305)
..+..-+..+++.|..++.+||...+...|+
T Consensus 114 ~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge 144 (191)
T PRK14140 114 KSLLKGVEMVHRQLLEALKKEGVEVIEAVGE 144 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEeeCCCCC
Confidence 4566677888999999999999998887777
No 43
>PRK14151 heat shock protein GrpE; Provisional
Probab=39.45 E-value=2.3e+02 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCc
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGD 119 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd 119 (305)
..+..-+..++..|..++.++|...+...|+
T Consensus 98 ~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~ 128 (176)
T PRK14151 98 KPMREGVELTLKMFQDTLKRYQLEAVDPHGE 128 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCC
Confidence 5577778889999999999999999888887
No 44
>PRK14146 heat shock protein GrpE; Provisional
Probab=37.96 E-value=2.8e+02 Score=24.25 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
...+..=+..++..|..++..||...+...|+-|
T Consensus 130 ~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 163 (215)
T PRK14146 130 LKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPF 163 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCC
Confidence 3557777899999999999999999988777643
No 45
>PRK14143 heat shock protein GrpE; Provisional
Probab=37.75 E-value=2.9e+02 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
..+..-+..++..|..++.++|...+...|+-|
T Consensus 145 ~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~F 177 (238)
T PRK14143 145 QALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEF 177 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 456667788899999999999999988777643
No 46
>PRK09581 pleD response regulator PleD; Reviewed
Probab=37.73 E-value=3.5e+02 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=37.9
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeC
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGG 126 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g 126 (305)
..+++++++.+|..+....+....-.++..+-..+...+.. .+.+.+..|+.++++..
T Consensus 323 ~~~~l~i~i~~~~~i~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ill~ 380 (457)
T PRK09581 323 PLSLMMIDIDHFKKVNDTYGHDAGDEVLREFAKRLRNNIRG-TDLIARYGGEEFVVVMP 380 (457)
T ss_pred cEEEEEEecchhhHhHHhhChhhHHHHHHHHHHHHHhhCCC-CcEEEEecCCEEEEEeC
Confidence 46788999998887766665554444555555555555554 34456666788887763
No 47
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=37.37 E-value=1.5e+02 Score=24.17 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
...+..-++.+...|..++..+|...+...|+-|
T Consensus 87 ~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~F 120 (165)
T PF01025_consen 87 EESLLEGLEMILKQLEDILEKNGVEEIEPVGEPF 120 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCC
Confidence 4577788999999999999999999999999865
No 48
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=35.08 E-value=2.3e+02 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCc
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGD 119 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd 119 (305)
...+..-++.++..|..++..+|...+...|+
T Consensus 61 ~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~ 92 (137)
T cd00446 61 LKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGE 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Confidence 46677788999999999999999999888886
No 49
>PRK14150 heat shock protein GrpE; Provisional
Probab=32.72 E-value=3.2e+02 Score=23.39 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
...+..-+..++..|..++.+||...+...|+-|
T Consensus 115 ~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~F 148 (193)
T PRK14150 115 LKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 3567778889999999999999999988777643
No 50
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=32.49 E-value=1.8e+02 Score=30.71 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=54.7
Q ss_pred CcEEEEEEeccCcccccccCCH-------HhHHHHHHHHHHHHHHhhhh---------------cCeEEEeeeCceEEEE
Q psy7235 67 EHVTMLFSDIVGFTSICSTATP-------FMVISMLENLYNKFDAFCGQ---------------LDVYKVETIGDAYCVA 124 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~-------~~~~~~ln~~~~~~~~~v~~---------------~~g~~ik~~Gd~~~~~ 124 (305)
.-++++.+|+.++..+...... ..+.+++.-+|......+.. ..++++---||-++++
T Consensus 520 ~~~~~lk~DvD~mGk~~~~~~~~~~is~~s~~s~~~s~ff~~~~~~i~~~~~~~~~~~~~~~~~~~~~iVYsGGDDvla~ 599 (799)
T COG1353 520 KYLAILKMDVDNMGKLFSEGLKKDTISRYSTFSRMLSLFFRGYLNKIAEDIRFRVLPSPLLDEDPNGYIVYSGGDDVLAV 599 (799)
T ss_pred ceeEEEEecHHHHHHHHHhhccccchhhhccchHHHHHHHHHHHHHHhhchhhhhccccccCCCCcEEEEEecCCceEEe
Confidence 4579999999999887655221 22344455555555444422 3588888889999998
Q ss_pred eCCCCCCchHHHHHHHHHHHHHHHhhhccc
Q psy7235 125 GGLHKTQSTHAQRIAWMALKMIHTCASHST 154 (305)
Q Consensus 125 ~g~~~~~~~~a~~a~~~Al~i~~~~~~~~~ 154 (305)
.. ..++.++|.++...+..+..
T Consensus 600 g~--------~d~vld~a~el~~~F~~~~~ 621 (799)
T COG1353 600 GP--------WDDVLDFAKELRELFSEFTG 621 (799)
T ss_pred cc--------HHHHHHHHHHHHHHHHHHhc
Confidence 62 34788899999888877643
No 51
>PRK14164 heat shock protein GrpE; Provisional
Probab=32.29 E-value=3.4e+02 Score=23.79 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhcCeEEEeeeCce
Q psy7235 96 ENLYNKFDAFCGQLDVYKVETIGDA 120 (305)
Q Consensus 96 n~~~~~~~~~v~~~~g~~ik~~Gd~ 120 (305)
..+...|..++.+||...+...|+-
T Consensus 148 ~~i~~~l~~vL~k~Gve~I~~~Ge~ 172 (218)
T PRK14164 148 KAFSDKLTNVLAGLKVEKFGEEGDA 172 (218)
T ss_pred HHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 4567889999999999998877773
No 52
>PRK14153 heat shock protein GrpE; Provisional
Probab=30.81 E-value=3.5e+02 Score=23.25 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
...+..-+..++..|..++..+|...|...|+-|
T Consensus 109 ~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~F 142 (194)
T PRK14153 109 MNSIVEGIEMVSKQFFSILEKYGLERIECEGEEF 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 3566777889999999999999999988778743
No 53
>KOG4797|consensus
Probab=28.18 E-value=2.8e+02 Score=21.40 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc
Q psy7235 12 DGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWL 57 (305)
Q Consensus 12 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~ 57 (305)
+-.|++++-++.+|.+..++....++.+ .||....|+.....+..
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN-~lLk~~~spe~L~ql~~ 107 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALEREN-SLLKTLASPEQLAQLPA 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCHHHHHHHHH
Confidence 3456667777777666555555544433 67888888888777764
No 54
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.12 E-value=4e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCeEEEee-eCce
Q psy7235 88 PFMVISMLENLYNKFDAFCGQLDVYKVET-IGDA 120 (305)
Q Consensus 88 ~~~~~~~ln~~~~~~~~~v~~~~g~~ik~-~Gd~ 120 (305)
...+..=+..++..|..++..+|...+.. .|+-
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~ 148 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTP 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 45677888999999999999999998875 5763
No 55
>PRK14144 heat shock protein GrpE; Provisional
Probab=25.47 E-value=4.4e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceE
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~ 121 (305)
..+..-+..++..|..++..+|...|...|+.|
T Consensus 121 ~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~F 153 (199)
T PRK14144 121 PSMHEGLELTMKLFLDALQKFDVEQIDPLGQTF 153 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 356778899999999999999999998888743
No 56
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.92 E-value=1.4e+02 Score=24.67 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7235 11 TDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHM 45 (305)
Q Consensus 11 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~ 45 (305)
+.+++|+++++..+++..+++....+.+....+..
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999889988888888887777766654
No 57
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.78 E-value=4.6e+02 Score=22.75 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEee-eCceE
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVET-IGDAY 121 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~-~Gd~~ 121 (305)
..+..=+..++..|..++.++|...+.. .|+-|
T Consensus 130 ~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~F 163 (208)
T PRK14154 130 KSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPF 163 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 5567778889999999999999999875 57643
No 58
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.39 E-value=1.6e+02 Score=26.84 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7235 12 DGLRRRMDKLKSSIEEANQAVDQERETNVSLLH 44 (305)
Q Consensus 12 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~ 44 (305)
+.|++++..++.+.....+.++.|.++.+++|.
T Consensus 76 ~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 76 YKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444433333333335555555544443
No 59
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.68 E-value=4.5e+02 Score=22.18 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEee-eCce
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVET-IGDA 120 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~-~Gd~ 120 (305)
..+..-+..++..|..+++.+|...+.- .|+.
T Consensus 98 ~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~ 130 (178)
T PRK14161 98 TNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSM 130 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 4566777888999999999999998765 4663
No 60
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.74 E-value=5.5e+02 Score=22.92 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=32.4
Q ss_pred cCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhh--cCeEEEeeeCc
Q psy7235 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQ--LDVYKVETIGD 119 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~--~~g~~ik~~Gd 119 (305)
.+.+|+---.+.+|.+ +++|+-.+++-+...+.+.... -.+.+++++||
T Consensus 59 I~~lTvYaFS~eN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd 109 (249)
T PRK14834 59 IGYLTLFAFSSENWSR-----PASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGE 109 (249)
T ss_pred CCEEEEEEEeccccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcC
Confidence 4568887777888863 6777766666555555544432 23777999999
No 61
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=22.08 E-value=2.6e+02 Score=22.90 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhcC-eEEEeeeCceEEEEeC
Q psy7235 97 NLYNKFDAFCGQLD-VYKVETIGDAYCVAGG 126 (305)
Q Consensus 97 ~~~~~~~~~v~~~~-g~~ik~~Gd~~~~~~g 126 (305)
+++..+.+.+..+| ...++|+|+.+.+.|.
T Consensus 48 ~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~ 78 (146)
T PF08952_consen 48 NLMDELLQKFAQYGEVVLVRFVGDTMWVTFR 78 (146)
T ss_dssp HHHHHHHHHHHCCS-ECEEEEETTCEEEEES
T ss_pred HHHHHHHHHHHhCCceEEEEEeCCeEEEEEC
Confidence 44455555666677 7788999999999994
No 62
>PRK14145 heat shock protein GrpE; Provisional
Probab=21.39 E-value=5.3e+02 Score=22.17 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCce
Q psy7235 89 FMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120 (305)
Q Consensus 89 ~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~ 120 (305)
..+..-+..+++.|..++..+|...+...|+-
T Consensus 119 ~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~ 150 (196)
T PRK14145 119 NSLKEGIELIYRQFKKILDKFGVKEIEAEGQI 150 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 44667789999999999999999998877764
No 63
>PRK04239 hypothetical protein; Provisional
Probab=21.27 E-value=1.2e+02 Score=23.47 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHH
Q psy7235 38 TNVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYN 100 (305)
Q Consensus 38 ~~~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~ 100 (305)
....+|..+|-+...++|.+=.-..++....|--+-+-+...-.+...++.+++..+|+.+..
T Consensus 38 qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e~~L~~lL~~v~~ 100 (110)
T PRK04239 38 QKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQLTP 100 (110)
T ss_pred HHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhh
Confidence 445689999999999998764333333333332233334455566777888888888887754
No 64
>PF15530 Toxin_50: Putative toxin 50
Probab=21.21 E-value=59 Score=26.65 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEEeeceEEEEeecCCCcceEE
Q psy7235 194 MRIGLHTGTVLAGVVGVKMPRYCL 217 (305)
Q Consensus 194 ~rIGIh~G~v~~G~vG~~~~~y~v 217 (305)
..|||..||-+-|++|...++|+.
T Consensus 87 asiGi~FGPYfpg~~gd~~rdyS~ 110 (168)
T PF15530_consen 87 ASIGISFGPYFPGVFGDPDRDYSI 110 (168)
T ss_pred ceEeeecCCcCccccCCCCcccee
Confidence 789999999999999988888763
No 65
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=21.07 E-value=6e+02 Score=22.70 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=42.2
Q ss_pred EEeccCcccccccCCHH---hHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 73 FSDIVGFTSICSTATPF---MVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 73 f~DI~~ft~l~~~~~~~---~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
.+.|.||-.+++.+.|. ++..+-..++..+.+.+...||.+.-+-=|-++++.
T Consensus 3 ~i~l~~Y~eWTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavt 58 (246)
T PF05165_consen 3 LIQLDNYREWTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVT 58 (246)
T ss_dssp EEEETTHHHHCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-
T ss_pred eEEecCCccCcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEee
Confidence 45788999999998864 466777899999999999999999999999998875
No 66
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.92 E-value=5.7e+02 Score=22.49 Aligned_cols=83 Identities=11% Similarity=0.168 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhCCHHHHHHHhcCCcccccccCcEEEEEEeccCcccccc
Q psy7235 10 LTDGLRRRMDKLKSSIEEANQAVDQERETN-----VSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICS 84 (305)
Q Consensus 10 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~-----~~ll~~~lP~~v~~~l~~~~~~~~~~~~~vtvlf~DI~~ft~l~~ 84 (305)
-..+|+.++..+....+..+++.+.+++.. .+++..+||- ++.|...-.. ++.
T Consensus 48 e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpV--lDnLERAL~~------------~~~-------- 105 (223)
T PRK14142 48 KVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGV--LDDLERARKH------------GDL-------- 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--HhHHHHHHhc------------ccc--------
Confidence 344566666666666666676666666655 3556677773 2332211000 000
Q ss_pred cCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCce
Q psy7235 85 TATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120 (305)
Q Consensus 85 ~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~ 120 (305)
... -++.++..|..+++++|...+...|+-
T Consensus 106 --~~~----~v~~I~kqL~~iLek~GVe~I~~~Ge~ 135 (223)
T PRK14142 106 --ESG----PLKSVADKLDSALTGLGLVAFGAEGED 135 (223)
T ss_pred --ccH----HHHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 001 134578899999999999988777764
No 67
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.50 E-value=3.4e+02 Score=20.15 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHH
Q psy7235 97 NLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIA 139 (305)
Q Consensus 97 ~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~ 139 (305)
.+-..+.++....||.++...|.+-+.-|.- .+.|.+|.
T Consensus 18 ~I~~RL~qLsdNCGGkVl~v~~~tAilrF~~----~~~A~RA~ 56 (90)
T PF11608_consen 18 SIKNRLRQLSDNCGGKVLSVSGGTAILRFPN----QEFAERAQ 56 (90)
T ss_dssp HHHHHHHHHHHTTT--EEE--TT-EEEEESS----HHHHHHHH
T ss_pred HHHHHHHHHhhccCCEEEEEeCCEEEEEeCC----HHHHHHHH
Confidence 4556677778889999999999988888843 34455543
No 68
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=20.49 E-value=2.6e+02 Score=18.23 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy7235 11 TDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIF 47 (305)
Q Consensus 11 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~l 47 (305)
.++|...+.+.+......+.++.+.+.-+..||.+++
T Consensus 2 ~eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVm 38 (48)
T PF09457_consen 2 REELISLLKKQEEENARKDSRVRELEDYIDNLLVRVM 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777778888888877777654
Done!