Query psy7235
Match_columns 305
No_of_seqs 186 out of 1470
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:33:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uvj_A Guanylate cyclase solub 100.0 7.7E-45 2.6E-49 319.1 21.0 200 57-288 3-202 (225)
2 2wz1_A Guanylate cyclase solub 100.0 2.7E-41 9.2E-46 295.3 21.3 191 58-284 2-203 (219)
3 1yk9_A Adenylate cyclase; beta 100.0 4.6E-42 1.6E-46 297.0 13.4 191 62-290 4-194 (204)
4 3et6_A Soluble guanylyl cyclas 100.0 5.5E-41 1.9E-45 286.8 19.9 184 62-281 3-187 (190)
5 1ab8_A Adenylyl cyclase; lyase 100.0 2.7E-41 9.3E-46 295.5 16.8 189 57-282 3-209 (220)
6 2w01_A Adenylate cyclase; guan 100.0 2.8E-40 9.4E-45 286.7 20.2 189 63-284 9-198 (208)
7 1azs_A VC1; complex (lyase/hyd 100.0 5.2E-41 1.8E-45 293.4 14.5 186 59-283 25-214 (220)
8 3r5g_A CYAB; adenylyl cyclase, 100.0 1.4E-39 4.9E-44 279.7 20.3 188 63-282 4-194 (198)
9 1y10_A Hypothetical protein RV 100.0 5.4E-38 1.9E-42 296.1 22.5 200 32-285 160-381 (407)
10 1wc3_A Adenylate cyclase; solu 100.0 2.1E-38 7E-43 277.1 17.1 191 62-280 21-214 (219)
11 1fx2_A Receptor-type adenylate 100.0 2.9E-37 9.9E-42 272.3 19.1 219 59-290 3-228 (235)
12 1ybt_A Hydrolase, alpha/beta h 100.0 1.7E-37 5.6E-42 264.3 16.6 173 60-284 9-181 (184)
13 3mr7_A Adenylate/guanylate cyc 100.0 2.3E-35 8E-40 251.8 18.2 173 64-284 3-176 (189)
14 3hls_A Guanylate cyclase solub 98.4 2.8E-07 9.6E-12 63.9 4.6 58 1-58 9-66 (66)
15 3i5c_A Fusion of general contr 96.6 0.068 2.3E-06 44.1 14.4 81 67-152 60-140 (206)
16 2qv6_A MJ0145, GTP cyclohydrol 95.1 0.16 5.6E-06 44.5 10.4 60 66-125 129-189 (268)
17 3hva_A Protein FIMX; ggdef dig 94.4 0.16 5.6E-06 40.6 8.4 79 67-151 43-121 (177)
18 3mtk_A Diguanylate cyclase/pho 93.9 0.35 1.2E-05 38.8 9.5 76 67-151 35-110 (178)
19 3tvk_A DGC, diguanylate cyclas 93.8 0.26 9E-06 40.4 8.4 78 68-151 33-110 (179)
20 3ign_A Diguanylate cyclase; gg 93.7 0.33 1.1E-05 38.7 8.9 79 67-151 38-116 (177)
21 3icl_A EAL/ggdef domain protei 93.5 0.22 7.5E-06 39.5 7.5 59 67-126 29-87 (171)
22 3ezu_A Ggdef domain protein; m 93.3 0.52 1.8E-05 42.7 10.4 79 67-151 212-290 (342)
23 3bre_A Probable two-component 93.1 1.9 6.3E-05 38.5 13.7 60 67-126 201-260 (358)
24 3pjx_A Cyclic dimeric GMP bind 93.0 0.82 2.8E-05 42.5 11.5 80 67-151 47-129 (430)
25 3hvw_A Diguanylate-cyclase (DG 92.5 0.26 8.8E-06 39.7 6.4 78 67-151 26-106 (176)
26 3qyy_A Response regulator; C-D 90.6 1.6 5.6E-05 34.2 9.3 58 67-125 41-98 (167)
27 1w25_A Stalked-cell differenti 88.1 2.4 8.1E-05 39.4 9.8 78 67-150 318-395 (459)
28 3ung_C CMR2DHD; ferredoxin fol 70.8 30 0.001 34.1 10.7 76 68-152 415-520 (693)
29 3hvb_A Protein FIMX; EAL phosp 59.9 1.9 6.4E-05 40.1 0.0 58 67-125 43-100 (437)
30 2xzr_A Immunoglobulin-binding 49.9 19 0.00066 25.9 3.9 39 7-45 53-91 (114)
31 3sjb_C Golgi to ER traffic pro 44.0 41 0.0014 24.2 4.9 36 10-45 50-85 (93)
32 3sja_C Golgi to ER traffic pro 28.9 67 0.0023 21.5 3.7 26 10-35 33-58 (65)
33 2rm8_A Sensory rhodopsin II tr 25.7 19 0.00066 23.7 0.6 43 5-47 19-61 (68)
34 2qv6_A MJ0145, GTP cyclohydrol 21.9 1.6E+02 0.0056 25.3 6.0 55 71-125 4-61 (268)
No 1
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=100.00 E-value=7.7e-45 Score=319.09 Aligned_cols=200 Identities=61% Similarity=1.053 Sum_probs=180.2
Q ss_pred cCCcccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHH
Q psy7235 57 LGESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQ 136 (305)
Q Consensus 57 ~~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~ 136 (305)
+++....++++++||||+||+|||.+++.++|++++.+||++|..+++++..|+|+++|++||+||++||+|.+..+|+.
T Consensus 3 ~g~~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~~~a~ 82 (225)
T 3uvj_A 3 QGQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAV 82 (225)
T ss_dssp --CEEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCTTHHH
T ss_pred CCCccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCchHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceE
Q psy7235 137 RIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYC 216 (305)
Q Consensus 137 ~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~ 216 (305)
+|+.||++|++.+..++...+.+ +++|||||+|+|++|++|..+++||
T Consensus 83 ~a~~~al~~~~~~~~~~~~~~~~--------------------------------l~~riGih~G~v~~G~iG~~~~~~~ 130 (225)
T 3uvj_A 83 QIALMALKMMELSDEVMSPHGEP--------------------------------IKMRIGLHSGSVFAGVVGVKMPRYC 130 (225)
T ss_dssp HHHHHHHHHHHHHTTSBCTTSCB--------------------------------CCEEEEEEEEEEEEEEECC-CCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCc--------------------------------eEEEEEEEeccEEEEEecCCCceEE
Confidence 99999999999999877655444 4499999999999999999888999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCCCCCC
Q psy7235 217 LFGHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPS 288 (305)
Q Consensus 217 v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~~~~ 288 (305)
+||++||+|+||++.|.+++|+||++|++.+.+...|.|+++|.+.+|||++++.++.+|+|..+..+..+.
T Consensus 131 ~~Gd~VN~AaRle~~a~~~~I~vS~~~~~~l~~~~~~~~~~~g~~~lk~~~~~~~~~~~y~l~~~~~~~~~~ 202 (225)
T 3uvj_A 131 LFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQGTNSK 202 (225)
T ss_dssp EESHHHHHHHHHHHTSCTTCEEECHHHHHHHTTSTTEEEEECCSTTSCTTSCTTSCCCCEEEEEEC------
T ss_pred EECcHHHHHHHHHhcCCCCeEEECHHHHHhhcCCCceEEEEcCcEEecCCCCCCCceEEEEEeccccCCCCc
Confidence 999999999999999999999999999999998668999999999998889999999999999887765544
No 2
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=100.00 E-value=2.7e-41 Score=295.33 Aligned_cols=191 Identities=37% Similarity=0.692 Sum_probs=171.5
Q ss_pred CCcccccccCcEEEEEEeccCcccccccCC----HHhHHHHHHHHHHHHHHhhh---hcCeEEEeeeCceEEEEeCCCCC
Q psy7235 58 GESIEAKTHEHVTMLFSDIVGFTSICSTAT----PFMVISMLENLYNKFDAFCG---QLDVYKVETIGDAYCVAGGLHKT 130 (305)
Q Consensus 58 ~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~----~~~~~~~ln~~~~~~~~~v~---~~~g~~ik~~Gd~~~~~~g~~~~ 130 (305)
|+...+++++++||||+||+|||.+++.++ |++++.+||++|..++.++. .|+|+++|++||++|++||.|.+
T Consensus 2 G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~ 81 (219)
T 2wz1_A 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEP 81 (219)
T ss_dssp ---CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSC
T ss_pred CCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCC
Confidence 456677888999999999999999999999 99999999999999999999 88999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecC
Q psy7235 131 QSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGV 210 (305)
Q Consensus 131 ~~~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~ 210 (305)
.++|+.+|++||++|++.+..++.. . ..+++|||||+|+|++|++|+
T Consensus 82 ~~~~a~~A~~~Al~~~~~~~~~~~~-~--------------------------------~~l~~rIGi~~G~v~~G~iG~ 128 (219)
T 2wz1_A 82 CIHHARSICHLALDMMEIAGQVQVD-G--------------------------------ESVQITIGIHTGEVVTGVIGQ 128 (219)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCEET-T--------------------------------EECCEEEEEEEEEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhcc-C--------------------------------CceEEEEEEEEEEEEEEEeCC
Confidence 9999999999999999999877532 2 345699999999999999999
Q ss_pred CCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhh----CCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCC
Q psy7235 211 KMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLR----NTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP 284 (305)
Q Consensus 211 ~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~----~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~ 284 (305)
.+++|++||++||+|+||++.+++++|+||++|++.+. ....|.++++|.+.+ || +..++.+|.+......
T Consensus 129 ~~~~~~v~Gd~VN~AaRLe~~a~~~~IlvS~~~~~~l~~~~~~~~~~~~~~~g~~~l-KG--~~~~~~vy~l~~~~~~ 203 (219)
T 2wz1_A 129 RMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSM-KG--KKEPMQVWFLSRKNTG 203 (219)
T ss_dssp SSCEEEEESHHHHHHHHHHHTSCTTSEEEEHHHHHHTTSTTTCCTTEEEEEEEEECC-TT--CSSCEEEEEEEESCCC
T ss_pred CceEEEEECHHHHHHHHHHhcCCCCeEEECHHHHHHHhhhcccCCceEEEEeCCEEe-cC--CCccEEEEEEeccCcC
Confidence 87789999999999999999999999999999999997 224799999999999 99 6678889999866443
No 3
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.6e-42 Score=297.05 Aligned_cols=191 Identities=33% Similarity=0.558 Sum_probs=170.6
Q ss_pred cccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHH
Q psy7235 62 EAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWM 141 (305)
Q Consensus 62 ~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~ 141 (305)
.+++++++||||+||+|||.+++.++|++++.+||++|..+++++.+|||+++|++||++|++||.|.+..+|+.+|++|
T Consensus 4 ~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~~~a~~A~~~ 83 (204)
T 1yk9_A 4 IADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADF 83 (204)
T ss_dssp --CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHTH
T ss_pred CccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCch
Q psy7235 142 ALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHN 221 (305)
Q Consensus 142 Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~ 221 (305)
|++|++.+..++...+.. +++|||||+|+|++|++|..+++|++||++
T Consensus 84 Al~~~~~~~~~~~~~~~~--------------------------------l~~rIGI~tG~v~~g~vG~~r~~~~v~G~~ 131 (204)
T 1yk9_A 84 ALDMTNVAAQLKDPRGNP--------------------------------VPLRVGLATGPVVAGVVGSRRFRYCVWGDA 131 (204)
T ss_dssp HHHHHHHTTTCCSSSCCC--------------------------------CCEEEEEEEECEEECCCCSSSCCCCEEEHH
T ss_pred HHHHHHHHHHHHhccCCC--------------------------------ceEEEEEEeeEEEEEEecCCCceEEEEChH
Confidence 999999998887654444 449999999999999999977789999999
Q ss_pred HHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCCCCCCCC
Q psy7235 222 VTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEE 290 (305)
Q Consensus 222 Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~~~~~~ 290 (305)
||+|+||++.+.+++|+||+++++.+.+ .|.++++|.+.+ ||. .++.+|++.+.+....+...
T Consensus 132 Vn~AaRle~~a~~g~I~vs~~~~~~l~~--~~~~~~~g~~~l-kG~---~~~~~y~l~~~~~~~~~~~~ 194 (204)
T 1yk9_A 132 VNVASRMESTDSVGQIQVPDEVYERLKD--DFVLRERGHINV-KGK---GVMRTWYLIGRKVAADPGEV 194 (204)
T ss_dssp HHHTTHHHHSCSTTCEEBCHHHHHCCTT--CEEEEECCCCCC-SSS---SSCCCCEEEEEECCC-----
T ss_pred HHHHHHHHhcCCCCeEEECHHHHHHhhc--CeeEEEcceEEe-cCC---CccEEEEEEeccCCCCcccc
Confidence 9999999999999999999999999997 899999999999 993 36789999887665444333
No 4
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=100.00 E-value=5.5e-41 Score=286.84 Aligned_cols=184 Identities=41% Similarity=0.684 Sum_probs=167.4
Q ss_pred cccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhc-CeEEEeeeCceEEEEeCCCCCCchHHHHHHH
Q psy7235 62 EAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQL-DVYKVETIGDAYCVAGGLHKTQSTHAQRIAW 140 (305)
Q Consensus 62 ~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~-~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~ 140 (305)
.+++++++||||+||+|||.+++.++|+++..+||++|..+++++.+| |+.++|++||++|++||.|....+|+.+|++
T Consensus 3 ~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a~~ 82 (190)
T 3et6_A 3 PAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLE 82 (190)
T ss_dssp CCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHH
T ss_pred CccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCchhHHHHHHH
Confidence 356788999999999999999999999999999999999999999999 7888999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCc
Q psy7235 141 MALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGH 220 (305)
Q Consensus 141 ~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~ 220 (305)
||++|++.+.+++...+.+ +++|||||+|+|++|++|..+++|++||+
T Consensus 83 ~al~~~~~~~~~~~~~~~~--------------------------------l~~riGi~~G~v~~g~vG~~~~~~~v~G~ 130 (190)
T 3et6_A 83 FALRMHEEASRVASSLGEP--------------------------------VRIRVGMHSGPVVAGVVGRKMPRFXLFGD 130 (190)
T ss_dssp HHHHHHHHHHTSCCC---C--------------------------------CCEEEEEEEEEEEEEEECSSSCEEEEESH
T ss_pred HHHHHHHHHHHHHhccCCC--------------------------------ceEEEEEEeccEEEEecCCCcceEEecCc
Confidence 9999999999876654444 44999999999999999998889999999
Q ss_pred hHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeec
Q psy7235 221 NVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDY 281 (305)
Q Consensus 221 ~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~ 281 (305)
+||+|+||++.|++++|+||+++++.++....|.++++|.+.+ || .+++.+|+|...
T Consensus 131 ~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~l-kG---~~~~~~y~l~~~ 187 (190)
T 3et6_A 131 TVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITV-KG---KGTMRTYLLSPL 187 (190)
T ss_dssp HHHHHHHHHHTSCTTSEEEEHHHHHHCSCGGGTCCCCEEEECC-SS---SSCEEEEEECCC
T ss_pred chhHHHHHHhcCCCCeEEECHHHHHHhCcCCceEEEEcCCEEe-cC---CCeEEEEEEecc
Confidence 9999999999999999999999999998655799999999999 88 345899999754
No 5
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=100.00 E-value=2.7e-41 Score=295.52 Aligned_cols=189 Identities=25% Similarity=0.427 Sum_probs=151.2
Q ss_pred cCCcccccccCcEEEEEEeccCcccccccCC----HHhHHHHHHHHHHHHHHhhhhc---CeEEEeeeCceEEEEeCCCC
Q psy7235 57 LGESIEAKTHEHVTMLFSDIVGFTSICSTAT----PFMVISMLENLYNKFDAFCGQL---DVYKVETIGDAYCVAGGLHK 129 (305)
Q Consensus 57 ~~~~~~~~~~~~vtvlf~DI~~ft~l~~~~~----~~~~~~~ln~~~~~~~~~v~~~---~g~~ik~~Gd~~~~~~g~~~ 129 (305)
.++..+.++++++||||+||+|||.+++.++ |++++.+||++|..|++++.+| +|+++|++||+||++||+|.
T Consensus 3 ~~~~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~ 82 (220)
T 1ab8_A 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA 82 (220)
T ss_dssp ----CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCC
T ss_pred CCCcccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCc
Confidence 3566778889999999999999999999875 7899999999999999999986 89999999999999999987
Q ss_pred -----------CCchHHHHHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEE
Q psy7235 130 -----------TQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGL 198 (305)
Q Consensus 130 -----------~~~~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGI 198 (305)
...+|+.+|++||++|++.+..++..... .+++||||
T Consensus 83 ~~~~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~~~~--------------------------------~l~~rIGI 130 (220)
T 1ab8_A 83 IPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN--------------------------------DFKLRVGI 130 (220)
T ss_dssp SCCC--------CCHHHHHHHHHHHHHHHHHHHHHTTTTC--------------------------------CCCCEEEE
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHhhccCC--------------------------------ceEEEEEE
Confidence 46789999999999999999887654333 35599999
Q ss_pred eeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEE
Q psy7235 199 HTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFV 278 (305)
Q Consensus 199 h~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v 278 (305)
|+|+|++|++|..+++||+||++||+|+||++.|++++|+||++|++.+.+ ..|.++++|.+.+ || +..+. +|++
T Consensus 131 h~G~v~~G~iG~~r~~y~v~Gd~VN~AaRle~~a~~g~I~vS~~~~~~l~~-~~~~~~~~g~~~l-KG--~~~~~-~~~~ 205 (220)
T 1ab8_A 131 NHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQT-LGYTCTCRGIINV-KG--KGDLK-TYFV 205 (220)
T ss_dssp EEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTCCTTCEEECHHHHHHHHH-HTCCCCC-------------------CC
T ss_pred EeeeEEEEeecCCceeEEEECcHHHHHHHHHhcCCCCeEEECHHHHHHhhc-CceEEEEeccEEe-cC--CCceE-EEEE
Confidence 999999999999888999999999999999999999999999999999986 2599999999999 99 44443 5555
Q ss_pred eecC
Q psy7235 279 NDYR 282 (305)
Q Consensus 279 ~~~~ 282 (305)
....
T Consensus 206 ~~~~ 209 (220)
T 1ab8_A 206 NTEM 209 (220)
T ss_dssp C---
T ss_pred eccc
Confidence 4443
No 6
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=100.00 E-value=2.8e-40 Score=286.67 Aligned_cols=189 Identities=25% Similarity=0.292 Sum_probs=170.0
Q ss_pred ccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHH
Q psy7235 63 AKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMA 142 (305)
Q Consensus 63 ~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~A 142 (305)
..+.+++||||+||+|||.+++.++|+++..+||.+|+.+++++..|+|+++|++||++|++||.|...++|+.+|++||
T Consensus 9 ~~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~a~~Av~~A 88 (208)
T 2w01_A 9 GGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAVACG 88 (208)
T ss_dssp CCEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCTTHHHHHHHHH
T ss_pred CCeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCChhHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecC-CCcceEEeCch
Q psy7235 143 LKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGV-KMPRYCLFGHN 221 (305)
Q Consensus 143 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~-~~~~y~v~G~~ 221 (305)
++|+..+..++.... ....+.+++|||||+|+|++|++|+ .+++|++||++
T Consensus 89 l~~~~~l~~~~~~~~----------------------------~~~~~~l~~riGi~~G~v~~g~vG~~~r~~~~v~G~~ 140 (208)
T 2w01_A 89 VEMQLALREVNQQVT----------------------------GLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQ 140 (208)
T ss_dssp HHHHHHHHHHHHHHH----------------------------TTTCCCCCCEEEEEEEEEEEEEEECSSCEEEEEESHH
T ss_pred HHHHHHHHHHHHHHh----------------------------hcCCCceEEEEEEEeeEEEEEEeCCCCeeEEEEECHH
Confidence 999999887653210 1123457799999999999999997 45579999999
Q ss_pred HHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCC
Q psy7235 222 VTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP 284 (305)
Q Consensus 222 Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~ 284 (305)
||+|+||++.+.+++|+||++|++.+.. .|.+++.|.+.+ || +..++.+|.|.+.+.+
T Consensus 141 Vn~AaRl~~~a~~~~I~vs~~~~~~l~~--~~~~~~~~~~~l-kG--~~~~~~vy~v~~~~~~ 198 (208)
T 2w01_A 141 VNLTYRIESYTTGGQIFISSTTLEAAGD--RVHVNGNRTVQP-KG--VKDPVVIWDVAGVGEP 198 (208)
T ss_dssp HHHHHHHHHTCCTTCEEEEHHHHHHHCT--TEEEEEEEEECC-TT--CSSCEEEEEEEEECTT
T ss_pred HHHHHHHHccCCCCeEEECHHHHHhhhc--ceEecccceEee-cC--CCCcEEEEEEccCCcc
Confidence 9999999999999999999999999997 899999999999 99 6678889999877554
No 7
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=100.00 E-value=5.2e-41 Score=293.44 Aligned_cols=186 Identities=28% Similarity=0.523 Sum_probs=164.7
Q ss_pred CcccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHH
Q psy7235 59 ESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRI 138 (305)
Q Consensus 59 ~~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a 138 (305)
..++.++++++||||+||+|||.+++.++|++++.+||++|+.+++++..|||+++|++||+||++||+|....+++.+|
T Consensus 25 ~~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~a~~A 104 (220)
T 1azs_A 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCC 104 (220)
T ss_dssp CCCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHH
T ss_pred ccccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCChHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEe
Q psy7235 139 AWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLF 218 (305)
Q Consensus 139 ~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~ 218 (305)
++||++|++.+..++...+. .+++|||||+|+|++|++|+.+++||+|
T Consensus 105 v~~Al~m~~~l~~~~~~~~~--------------------------------~l~irIGI~tG~v~~G~vG~~~~~y~v~ 152 (220)
T 1azs_A 105 VEMGMDMIEAISLVREMTGV--------------------------------NVNMRVGIHSGRVHCGVLGLRKWQFDVW 152 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCS--------------------------------CCEEEEEEEEEEEEEEECSSSSCCCEEE
T ss_pred HHHHHHHHHHHHHHHhhcCC--------------------------------CcEEEEEEEEeEEEEEEeCCCCcEEEEE
Confidence 99999999998876543222 4559999999999999999988889999
Q ss_pred CchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCc----eeeccCCCCCCcceeEEEEeecCC
Q psy7235 219 GHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRS----RELLPKGFPENIPGICYFVNDYRH 283 (305)
Q Consensus 219 G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g----~~~~~kG~~~~~~~~~y~v~~~~~ 283 (305)
|++||+|+||++.|++|+|+||++|++.+.+ .|.+++.+ ...+ || + ++.+|+|.+.+.
T Consensus 153 Gd~VN~AaRLe~~a~~g~IlvS~~t~~~l~~--~f~~~~~~~~~r~~~l-Kg--~--~v~~Y~l~~~~~ 214 (220)
T 1azs_A 153 SNDVTLANHMEAGGKAGRIHITKATLSYLNG--DYEVEPGCGGERNAYL-KE--H--SIETFLILRCTQ 214 (220)
T ss_dssp SHHHHHHHHHHHTCCTTSEEECSTTTTTTTT--CSCEEECCGGGTCHHH-HH--T--TCCCEEEC----
T ss_pred chHHHHHHHHHhcCCCCeEEECHHHHHhhcC--ceEEEECcCcccccee-cC--C--ceEEEEEecccc
Confidence 9999999999999999999999999999997 78888853 3457 66 3 378999986643
No 8
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=100.00 E-value=1.4e-39 Score=279.74 Aligned_cols=188 Identities=24% Similarity=0.313 Sum_probs=167.1
Q ss_pred ccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCC--chHHHHHHH
Q psy7235 63 AKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQ--STHAQRIAW 140 (305)
Q Consensus 63 ~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~--~~~a~~a~~ 140 (305)
..+.+++||||+||+|||.+++.++|+++..+||.+|..+++++.+|+|+++|++||++|++||.|... .+++.+|+.
T Consensus 4 ~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~ 83 (198)
T 3r5g_A 4 ETQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVS 83 (198)
T ss_dssp CCEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSCHHHHHHHHHH
T ss_pred CceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccccHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999999999999999999999999765 689999999
Q ss_pred HHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCC-cceEEeC
Q psy7235 141 MALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKM-PRYCLFG 219 (305)
Q Consensus 141 ~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~-~~y~v~G 219 (305)
||++|++.+..++... .......++++|||||+|+|++|++|... ++|++||
T Consensus 84 ~al~i~~~~~~~~~~~---------------------------~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~~v~G 136 (198)
T 3r5g_A 84 MGIAMRKHMKVLRQQW---------------------------RAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIG 136 (198)
T ss_dssp HHHHHHHHHHHHHHHH---------------------------HTTTCCSCCEEEEEEEEEEEEEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHHHHH---------------------------HhcCCCCceEEEEEEEEEEEEEEEeCCCcceEEEEEC
Confidence 9999999888765321 11111245779999999999999999764 5799999
Q ss_pred chHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecC
Q psy7235 220 HNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYR 282 (305)
Q Consensus 220 ~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~ 282 (305)
++||+|+||++.|++++|+||++|++.+++ .|.++++|.+.+ || +..|+.+|.|.+.+
T Consensus 137 ~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~--~~~~~~~g~~~l-kG--~~~p~~vy~v~~~~ 194 (198)
T 3r5g_A 137 REVNLASRLESASEAGEILISHETYSLIKD--VIMCRDKGQIAV-KG--FSRPVQIYQVVDSR 194 (198)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEHHHHHHHTT--TSCEEEEEEECC-TT--CSSCEEEEEECCCT
T ss_pred cHHHHHHHHHhhCCCCcEEECHHHHHHhhc--CceEEEcccEEe-ec--CCCcEEEEEEeeec
Confidence 999999999999999999999999999997 799999999999 99 67788899997653
No 9
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=100.00 E-value=5.4e-38 Score=296.05 Aligned_cols=200 Identities=18% Similarity=0.197 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhhCC-------HHHHHHHhcCCcc------------cccccCcEEEEEEeccCcccccccCCHHhHH
Q psy7235 32 VDQERETNVSLLHMIFP-------PDIAKRLWLGESI------------EAKTHEHVTMLFSDIVGFTSICSTATPFMVI 92 (305)
Q Consensus 32 ~~~~~~~~~~ll~~~lP-------~~v~~~l~~~~~~------------~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~ 92 (305)
..+++++.++||.+++| +.++++++.+... +.++++++||||+||+|||.+++.++|++++
T Consensus 160 ~~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~~~~v~~~~r~~~~~~~~~~~vTVlFaDIvgFT~ls~~~~p~evv 239 (407)
T 1y10_A 160 ELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSAEELG 239 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCEEEEEEEEEECSBCTTSCBCCHHHHH
T ss_pred cHhHHHHHHHHHHHhcccccccchHHHHHHHHhcccchhhhhhhhcccccccceeeEEEEEEEccCchHHHhhCCHHHHH
Confidence 35677889999999999 8898888765321 2346789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCccchhhhhhhHhhh
Q psy7235 93 SMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRV 172 (305)
Q Consensus 93 ~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (305)
.+||.|+..++.++. |+|+++|++||+|||+||.|. .|++||++|++.+...+ ..
T Consensus 240 ~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p~-------~a~~~Al~m~~~l~~~~----~~------------- 294 (407)
T 1y10_A 240 HLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDPA-------PLLDTVLKLVEVVDTDN----NF------------- 294 (407)
T ss_dssp HHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSHH-------HHHHHHHHHHHHHHTCT----TS-------------
T ss_pred HHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCHH-------HHHHHHHHHHHHHHHhC----CC-------------
Confidence 999999998888776 899999999999999999753 68999999999887632 12
Q ss_pred hhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhCC--
Q psy7235 173 LRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRNT-- 250 (305)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~-- 250 (305)
+++|||||+|+|++|+ ||+||++||+|+||++.|+||+|+||++|++.+...
T Consensus 295 -------------------l~iRIGIhtG~Vv~Gv-------ydv~GdtVN~AsRLes~a~~g~I~vS~~t~~~l~~~~~ 348 (407)
T 1y10_A 295 -------------------PRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPE 348 (407)
T ss_dssp -------------------CCEEEEEEEEEEEEET-------TEEEEHHHHHHHHHHHHCCTTCEEEEHHHHHSCCCC--
T ss_pred -------------------ceEEEEEEEEEEEEec-------CccCCCHHHHHHHHHhcCCCCeEEECHHHHHHHhcccc
Confidence 3399999999999983 799999999999999999999999999999999873
Q ss_pred -CCeEEEeCceeeccCCCCCCcceeEEEEeecCCCC
Q psy7235 251 -EHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPS 285 (305)
Q Consensus 251 -~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~ 285 (305)
..|.|+++|.+.+ || +.+++.+|+|.+...+.
T Consensus 349 ~~~f~~~~~G~v~l-KG--k~~~v~~y~l~~~~~~~ 381 (407)
T 1y10_A 349 ADGFQWSFAGPRRL-RG--IRGDVRLFRVRRGATRT 381 (407)
T ss_dssp -CCCEEEEEEEECC-TT--CCSCEEEEEEEC-----
T ss_pred cCceEEEEeceEEe-CC--CCCceEEEEEcccCCCc
Confidence 4799999999999 99 66899999998765443
No 10
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=100.00 E-value=2.1e-38 Score=277.06 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=163.8
Q ss_pred cccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCC--CchHHHHHH
Q psy7235 62 EAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKT--QSTHAQRIA 139 (305)
Q Consensus 62 ~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~--~~~~a~~a~ 139 (305)
...+.+++||||+||+|||.+++.++|+++..+||++|..+++++..|+|+++|++||++|++||.|.. ..+++.+|+
T Consensus 21 l~~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av 100 (219)
T 1wc3_A 21 MRPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAI 100 (219)
T ss_dssp CCCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHH
T ss_pred cCCceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCCChHHHHHHH
Confidence 345668999999999999999999999999999999999999999999999999999999999999865 457899999
Q ss_pred HHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecC-CCcceEEe
Q psy7235 140 WMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGV-KMPRYCLF 218 (305)
Q Consensus 140 ~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~-~~~~y~v~ 218 (305)
+||++|++.+..++..... .........+++++|||||+|+|++|++|. .+++|++|
T Consensus 101 ~~Al~~~~~l~~~~~~~~~----------------------~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~r~~y~v~ 158 (219)
T 1wc3_A 101 ATARQMLVALEKLNQGWQE----------------------RGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAI 158 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HTSSSSTTCCCCEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhh----------------------cccccccCCCccEEEEEEEeceEEEEEcCCCCeeEEEEE
Confidence 9999999998876532100 000011123567899999999999999997 45589999
Q ss_pred CchHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEee
Q psy7235 219 GHNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVND 280 (305)
Q Consensus 219 G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~ 280 (305)
|++||+|+||++.|++++|+||+++++.++. +.++++|.+.+ || +..++.+|.|..
T Consensus 159 Gd~VN~AaRLe~~a~~g~IlvS~~~~~~l~~---~~~~~~g~~~l-KG--~~~~v~vy~v~~ 214 (219)
T 1wc3_A 159 GPSVNIAARLQEATAPNSIMVSAMVAQYVPD---EEIIKREFLEL-KG--IDEPVMTCVINP 214 (219)
T ss_dssp SHHHHHHHHHHHHSCTTEEEEEHHHHTTSCG---GGEEEEEEECC-TT--CSSCEEEEEECS
T ss_pred CHHHHHHHHHHhcCCCCeEEECHHHHHhhcc---cceeEeeeEEe-cc--cCCcEEEEEEcC
Confidence 9999999999999999999999999999986 26889999999 99 567889999864
No 11
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=100.00 E-value=2.9e-37 Score=272.34 Aligned_cols=219 Identities=16% Similarity=0.222 Sum_probs=167.2
Q ss_pred CcccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHH
Q psy7235 59 ESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRI 138 (305)
Q Consensus 59 ~~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a 138 (305)
+...++.++++||||+||+|||.+++.+ |+++..+||.+++.+++++..|+|+++|++||+||++||.| .+|
T Consensus 3 ~~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p-------~~A 74 (235)
T 1fx2_A 3 NRAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP-------FAA 74 (235)
T ss_dssp GGSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH-------HHH
T ss_pred CcCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCH-------HHH
Confidence 3445677899999999999999999986 89999999999999999999999999999999999999974 468
Q ss_pred HHHHHHHHHHhhhcccCCCCccchhhhhhhHhhhh-----hhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCc
Q psy7235 139 AWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVL-----RPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMP 213 (305)
Q Consensus 139 ~~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~ 213 (305)
+++|++|+..+...++.... +..........+.. .|..........+..+.++++|||||+|+|++|++|. +.
T Consensus 75 ~~~Al~i~~~l~~~~w~~~~-l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~riGIh~G~v~~G~~G~-~~ 152 (235)
T 1fx2_A 75 VQLAQELQLCFLHHDWGTNA-LDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV-TK 152 (235)
T ss_dssp HHHHHHHHHHHHHSCCSCSH-HHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTT-SS
T ss_pred HHHHHHHHHHHHhCCCchhH-hhhhhhhhhhhccccccccCccccccccccccccccCcEEEEEEEeeEEEEEeccc-cc
Confidence 99999999988665443210 00000000000000 0000000000112234568899999999999999998 67
Q ss_pred ceEEeCchHHHHHHHhcCCCCCcEEeCHHHHHHhhC--CCCeEEEeCceeeccCCCCCCcceeEEEEeecCCCCCCCCC
Q psy7235 214 RYCLFGHNVTVANKFESGSEPLRINISPTTYECLRN--TEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEE 290 (305)
Q Consensus 214 ~y~v~G~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~--~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~~~~~~~ 290 (305)
+|++||++||+|+||++.|++|+|+||++|++.+.. ...|.++++|.+.+ || +..++.+|.|...+...+++..
T Consensus 153 ~~~v~Gd~VN~AaRle~~a~~g~IlvS~~~~~~l~~~~~~~~~~~~~g~~~l-kG--~~~~v~vy~l~~~~~~~~~~~~ 228 (235)
T 1fx2_A 153 GYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVAL-RG--VSDPVKMYQLNTVPSRNFAALR 228 (235)
T ss_dssp SEEEESHHHHHHHHHHHTCCTTCEEEEHHHHHTSCHHHHHTCCEEEEEEECC-TT--CSSCEEEEEECCSTTCCCCSCC
T ss_pred ceEEECHHHHHHHHHHhhcCCCEEEECHHHHHHHhhhcccCceeEecccEEe-cc--cCCceEEEEEeccCCCcCcccc
Confidence 899999999999999999999999999999999963 12699999999999 99 6678899999877665555443
No 12
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=100.00 E-value=1.7e-37 Score=264.28 Aligned_cols=173 Identities=18% Similarity=0.159 Sum_probs=153.5
Q ss_pred cccccccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHH
Q psy7235 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIA 139 (305)
Q Consensus 60 ~~~~~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~ 139 (305)
..+..+.+++||||+||+|||.+++.++++++..+||++|..+++++.+|||+++|++||++|++||.| .+|+
T Consensus 9 ~~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p-------~~A~ 81 (184)
T 1ybt_A 9 HHGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP-------SAAI 81 (184)
T ss_dssp ----CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH-------HHHH
T ss_pred CCCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH-------HHHH
Confidence 445667789999999999999999999999999999999999999999999999999999999999875 4799
Q ss_pred HHHHHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeC
Q psy7235 140 WMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFG 219 (305)
Q Consensus 140 ~~Al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G 219 (305)
+||++|++.+..++ + ++|||||+|+|++|.+|.. |++||
T Consensus 82 ~~Al~~~~~l~~~~------l--------------------------------~~riGi~~G~v~~g~ig~~---~~~~G 120 (184)
T 1ybt_A 82 ACADDIVDAVAALG------I--------------------------------EVRIGIHAGEVEVRDASHG---TDVAG 120 (184)
T ss_dssp HHHHHHHHHHHTTT------C--------------------------------CEEEEEEEEEEEEEECSSC---EEEES
T ss_pred HHHHHHHHHHHhcC------C--------------------------------cEEEEEEEeEEEEEecCCC---ceEEC
Confidence 99999999887653 2 3999999999999988874 99999
Q ss_pred chHHHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCC
Q psy7235 220 HNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP 284 (305)
Q Consensus 220 ~~Vn~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~ 284 (305)
++||+|+||++.|++|+|+||+++++.+.. ..|.++++|.+.+ || +..++.+|.|...+.+
T Consensus 121 ~~Vn~AaRl~~~a~~g~IlvS~~~~~~l~~-~~~~~~~~g~~~l-kG--~~~~~~vy~l~~~~~~ 181 (184)
T 1ybt_A 121 VAVHIGARVCALAGPSEVLVSSTVRDIVAG-SRHRFAERGEQEL-KG--VPGRWRLCVLMRDDAT 181 (184)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEHHHHHHTTT-SSCCEEEEEEECC-TT--SSSCEEEEEECCCC--
T ss_pred cHHHHHHHHHhcCCCCEEEECHHHHHhhcc-cCceEEEcCCEEe-cC--CCCcEEEEEEecCCCC
Confidence 999999999999999999999999999963 3799999999999 99 6678899999765443
No 13
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=100.00 E-value=2.3e-35 Score=251.84 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=150.6
Q ss_pred cccCcEEEEEEeccCcccccccCCHHhHHHHHHHHHHH-HHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHH
Q psy7235 64 KTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNK-FDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMA 142 (305)
Q Consensus 64 ~~~~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~-~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~A 142 (305)
.+.+++||||+||+|||.+++.++++.+ ..|+++|.. +++++..|||+++|++||++|++||. +.+|++||
T Consensus 3 ~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~-------~~~A~~~A 74 (189)
T 3mr7_A 3 AERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT-------AQAALRCA 74 (189)
T ss_dssp CEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESS-------HHHHHHHH
T ss_pred CcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCC-------HHHHHHHH
Confidence 4568899999999999999999888776 677887777 99999999999999999999999984 57999999
Q ss_pred HHHHHHhhhcccCCCCccchhhhhhhHhhhhhhhhhhhhhhcccccCceeeEEEEEeeceEEEEeecCCCcceEEeCchH
Q psy7235 143 LKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNV 222 (305)
Q Consensus 143 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~~~y~v~G~~V 222 (305)
++|++.+..++..... .+.+++|||||+|+|++| .|++||++|
T Consensus 75 l~i~~~l~~~~~~~~~------------------------------~~~l~~riGi~~G~v~~g-------~~~~~G~~V 117 (189)
T 3mr7_A 75 LEIQQAMQQREEDTPR------------------------------KERIQYRIGINIGDIVLE-------DGDIFGDAV 117 (189)
T ss_dssp HHHHHHHHHHTTTSCG------------------------------GGCCCEEEEEEEEEEEEC-------SSCEESHHH
T ss_pred HHHHHHHHHHhhhccc------------------------------CCceeEEEEEEEEEEEEE-------CCeEEChHH
Confidence 9999999887654221 134669999999999998 789999999
Q ss_pred HHHHHHhcCCCCCcEEeCHHHHHHhhCCCCeEEEeCceeeccCCCCCCcceeEEEEeecCCC
Q psy7235 223 TVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP 284 (305)
Q Consensus 223 n~Aarl~~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~~~kG~~~~~~~~~y~v~~~~~~ 284 (305)
|+|+||++.|++++|+||++|++.+.....|.++++|.+.+ || +..++.+|.+.+....
T Consensus 118 n~AaRl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~l-kG--~~~~v~vy~~~~~~~~ 176 (189)
T 3mr7_A 118 NVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKV-KN--ITRPIRVWQWVPDADR 176 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEHHHHHHHTTTCCSCCEEEEEEEE-TT--EEEEEEEEEECCCC--
T ss_pred HHHHHHHhhCCCCeEEECHHHHHhhccccCceEEECCCEEe-CC--cCCcEEEEEEcccccc
Confidence 99999999999999999999999999855699999999999 99 6678899999765443
No 14
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=98.40 E-value=2.8e-07 Score=63.90 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=53.7
Q ss_pred CcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC
Q psy7235 1 MELSSPGSKLTDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWLG 58 (305)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~lP~~v~~~l~~~ 58 (305)
|+++|++.....++..+++..+.++++..+.++.||++..+||.+++|++|++.++.|
T Consensus 9 lvl~~~q~~ae~~L~~~lE~~~~~Lee~t~~L~~EK~ktd~LL~~mLP~~VA~~Lk~G 66 (66)
T 3hls_A 9 LVLLGEQFREEYKLTQELEMLTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHC-
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCc
Confidence 4678889999999999999999999999999999999999999999999999999864
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=96.59 E-value=0.068 Score=44.06 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=57.6
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+...+..+-++-||.|++++. .... ..+...+-.+.
T Consensus 60 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~--~~~~---~~~~~~~~~i~ 134 (206)
T 3i5c_A 60 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP--GTSP---GGARLLAEKVR 134 (206)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE--TCCH---HHHHHHHHHHH
T ss_pred CcEEEEEEECcchhHHHhccChhHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEEC--CCCH---HHHHHHHHHHH
Confidence 458999999999999999988887777777777777666645567788999999988873 2222 23444444555
Q ss_pred HHhhhc
Q psy7235 147 HTCASH 152 (305)
Q Consensus 147 ~~~~~~ 152 (305)
..+...
T Consensus 135 ~~~~~~ 140 (206)
T 3i5c_A 135 RTVESL 140 (206)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 555543
No 16
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=95.06 E-value=0.16 Score=44.48 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=54.4
Q ss_pred cCcEEEEEEeccCccc-ccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 66 HEHVTMLFSDIVGFTS-ICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 66 ~~~vtvlf~DI~~ft~-l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
..+++|..+||.++|. .....++-+......+++..+.+.+++++|.....-||-|++++
T Consensus 129 dsqIaVahiDI~d~t~~~t~~~s~yd~~~~~l~l~~~Ll~y~~~igG~lf~iGgdny~ift 189 (268)
T 2qv6_A 129 DGYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPS 189 (268)
T ss_dssp SCCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEEC
T ss_pred cCceEEEEEEecCccccccccCChHHHHHHHHHHHHHHHHHHHHhCCEEEEECCCEEEEEe
Confidence 4579999999999998 66667899999999999999999999999999888899999988
No 17
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=94.42 E-value=0.16 Score=40.56 Aligned_cols=79 Identities=8% Similarity=0.072 Sum_probs=58.1
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+.++-||.+++++. .. +...+...+-.+.
T Consensus 43 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~--~~---~~~~~~~~~~~i~ 116 (177)
T 3hva_A 43 KPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK--GK---TPEQAQAALQRLL 116 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCEEEECSSSEEEEEEE--TC---CHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCeEEEEeC--CC---CHHHHHHHHHHHH
Confidence 467999999999999988888777777777777777777655 56678889999988873 22 2344555666666
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 117 ~~~~~ 121 (177)
T 3hva_A 117 KKVEN 121 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66654
No 18
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=93.95 E-value=0.35 Score=38.84 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=56.2
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++-||.+++++.- .+ +...+-.+.
T Consensus 35 ~~~~l~~idid~f~~in~~~G~~~gd~lL~~ia~~L~~~~~~-~~~~~R~~~d~F~il~~~----~~----~~~~~~~l~ 105 (178)
T 3mtk_A 35 IDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGE-GNKAFKIGFDRFAIICKS----EN----ISDFIERML 105 (178)
T ss_dssp TTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCS-SSEEEEEETTEEEEEEEC----SS----HHHHHHHHH
T ss_pred CceEEEEEEhhHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEecC----cc----HHHHHHHHH
Confidence 467999999999999999988887777787777777777654 567888999999888732 11 344445555
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
+.+..
T Consensus 106 ~~~~~ 110 (178)
T 3mtk_A 106 SQLLL 110 (178)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 55543
No 19
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=93.78 E-value=0.26 Score=40.43 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=55.2
Q ss_pred cEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy7235 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIH 147 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~ 147 (305)
+++++++||.+|..+.+.++-..-=.+|..+-..+...+.. +..+.++-||.+++++.- .....+...+..+.+
T Consensus 33 ~~~l~~iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~-~~~v~R~gGDEF~ill~~-----~~~~~~~~~~~~i~~ 106 (179)
T 3tvk_A 33 NLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIIIVKA-----ANDEEACRAGVRICQ 106 (179)
T ss_dssp EEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCT-TSCEEECSSSEEEEEEEE-----SSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCc-ccEEEEccCCEEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 57999999999999988887665555666666666666644 456788999999888732 223455566666666
Q ss_pred Hhhh
Q psy7235 148 TCAS 151 (305)
Q Consensus 148 ~~~~ 151 (305)
.+..
T Consensus 107 ~i~~ 110 (179)
T 3tvk_A 107 LVDN 110 (179)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=93.68 E-value=0.33 Score=38.74 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=56.9
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++-||.|++++.. . +...+...+-.+.
T Consensus 38 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~d~F~ill~~--~---~~~~~~~~~~~i~ 111 (177)
T 3ign_A 38 QATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQ-SDSAGRYGGEEFGIILPE--T---DAESARVICERIR 111 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCT-TSEEEECSSSEEEEEEET--C---CHHHHHHHHHHHH
T ss_pred CceEEEEEEchhhHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeCC--C---CHHHHHHHHHHHH
Confidence 457999999999999999888877777777777766666543 456788999999888732 2 2334555566666
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 112 ~~~~~ 116 (177)
T 3ign_A 112 EAIEK 116 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66654
No 21
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=93.54 E-value=0.22 Score=39.54 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=48.6
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeC
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGG 126 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g 126 (305)
...+++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++-||.++++..
T Consensus 29 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 87 (171)
T 3icl_A 29 NPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRD-GDTVARIGGDKFTILLN 87 (171)
T ss_dssp SCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCT-TCEEEEETTTEEEEEES
T ss_pred CcEEEEEEEChHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEec
Confidence 457899999999999999998888777888887777777654 56788899999988873
No 22
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=93.34 E-value=0.52 Score=42.65 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=52.9
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
..++++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++-||.+.++.. .... ..+...+-.+.
T Consensus 212 ~~~all~idId~fk~INd~~G~~~gD~lL~~va~~L~~~~~~-~d~v~R~ggdeF~ill~--~~~~---~~~~~~~~~l~ 285 (342)
T 3ezu_A 212 SNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRR-SDVVGRYDGDEFVVYLS--PVEP---ASLRTVAENLR 285 (342)
T ss_dssp CEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCT-TCEEEECSSSEEEEEES--SCCH---HHHHHHHHHHH
T ss_pred CcEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHHCCC-CcEEEEEcCCEEEEEEC--CCCH---HHHHHHHHHHH
Confidence 468999999999999999998877777777777777776654 56778899999988873 2222 34445555555
Q ss_pred HHhhh
Q psy7235 147 HTCAS 151 (305)
Q Consensus 147 ~~~~~ 151 (305)
..+..
T Consensus 286 ~~l~~ 290 (342)
T 3ezu_A 286 RSIEE 290 (342)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 23
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=93.05 E-value=1.9 Score=38.53 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=43.8
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeC
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGG 126 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g 126 (305)
...+++++||.+|..+.+.++....-.+|..+...+...+...+..+.++-||.|++++.
T Consensus 201 ~~~~l~~idid~fk~ind~~G~~~gD~~L~~va~~l~~~~~~~~~~~~R~ggdeF~ill~ 260 (358)
T 3bre_A 201 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 260 (358)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHhcCCcCcEEEEecCCeEEEEeC
Confidence 467899999999998877777665555666666555554444456777889999988763
No 24
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=92.99 E-value=0.82 Score=42.45 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=59.2
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhc---CeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQL---DVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMAL 143 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~---~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al 143 (305)
...+++++||.+|..+.+.++.+.--.+|..+-..+...+..+ +..+.++-||.+.++..- .. ...+...+-
T Consensus 47 ~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~~~~~~~v~R~ggdeF~ill~~--~~---~~~~~~~~~ 121 (430)
T 3pjx_A 47 SSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAPG--MT---REEALQLAQ 121 (430)
T ss_dssp SCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTSGGGTTCEEEEETTEEEEEEET--CC---HHHHHHHHH
T ss_pred CceEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCcCceEEEecCceEEEEeCC--CC---HHHHHHHHH
Confidence 4578999999999999999988888788888888888777664 677888999999887632 22 233444555
Q ss_pred HHHHHhhh
Q psy7235 144 KMIHTCAS 151 (305)
Q Consensus 144 ~i~~~~~~ 151 (305)
.+...+..
T Consensus 122 ~l~~~l~~ 129 (430)
T 3pjx_A 122 SLDSALSS 129 (430)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555554
No 25
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=92.48 E-value=0.26 Score=39.70 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred CcEEEEEEec---cCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHH
Q psy7235 67 EHVTMLFSDI---VGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMAL 143 (305)
Q Consensus 67 ~~vtvlf~DI---~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al 143 (305)
...+++++|| .+|..+.+.++.+..-.+|..+-..+...+.. ..+.++-||.++++..- .....+...+-
T Consensus 26 ~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~--~~v~R~~~deF~ill~~-----~~~~~~~~~~~ 98 (176)
T 3hvw_A 26 GALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD--FTLYKISPTRFGLLLPR-----QQQEETESVCL 98 (176)
T ss_dssp SEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT--SCEEEEETTEEEEEEEG-----GGGGGHHHHHH
T ss_pred CCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC--CeEEEecCCEEEEEeCC-----CCHHHHHHHHH
Confidence 4578899999 88998888888888888888888888888877 77888999999888732 22334445555
Q ss_pred HHHHHhhh
Q psy7235 144 KMIHTCAS 151 (305)
Q Consensus 144 ~i~~~~~~ 151 (305)
.+...+..
T Consensus 99 ~l~~~~~~ 106 (176)
T 3hvw_A 99 RLLRAFES 106 (176)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhC
Confidence 66665554
No 26
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=90.63 E-value=1.6 Score=34.21 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=45.5
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
..++++++||.+|..+.+.++.+..-.+|..+-..+...+.. +..+-++-||.|++++
T Consensus 41 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~deF~il~ 98 (167)
T 3qyy_A 41 WPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGA-QDWIGRWGGDEFLIGV 98 (167)
T ss_dssp CCCEEEEEEESSHHHHHHHHCHHHHHHHHHHHHHHHTTTCCT-TCEEEEEETTEEEEEE
T ss_pred CcEEEEEEechhhhHHHhhcCcHHHHHHHHHHHHHHHHhcCC-CCEEEeecCceEEEEc
Confidence 357999999999999998888877766666666666555543 5678889999998877
No 27
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=88.11 E-value=2.4 Score=39.38 Aligned_cols=78 Identities=15% Similarity=0.045 Sum_probs=57.9
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMI 146 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~ 146 (305)
..++++++||.+|..+.+.++...--.+|..+-..+...+.. ...+.++-||.|+++..- . ....+...|-.+.
T Consensus 318 ~~~~l~~idid~fk~iNd~~Gh~~gD~~L~~~a~~l~~~~~~-~d~~~R~ggdeF~il~~~--~---~~~~~~~~~~~i~ 391 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA-IDLPCRYGGEEFVVIMPD--T---ALADALRIAERIR 391 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCT-TSEEEECSSSEEEEEETT--C---CHHHHHHHHHHHH
T ss_pred CcEEEEEEEchhhchhhhccChhhHHHHHHHHHHHHHHhCCC-cCEEEEEcCceEEEEeCC--C---CHHHHHHHHHHHH
Confidence 467999999999999999998887777777777777776654 457788999999988732 2 2334555666666
Q ss_pred HHhh
Q psy7235 147 HTCA 150 (305)
Q Consensus 147 ~~~~ 150 (305)
..+.
T Consensus 392 ~~~~ 395 (459)
T 1w25_A 392 MHVS 395 (459)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 28
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=70.80 E-value=30 Score=34.08 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=54.4
Q ss_pred cEEEEEEeccCcccccccC--------------------------CH---HhHHHHHHHHHH-HHHHhhhhcCeEEEeee
Q psy7235 68 HVTMLFSDIVGFTSICSTA--------------------------TP---FMVISMLENLYN-KFDAFCGQLDVYKVETI 117 (305)
Q Consensus 68 ~vtvlf~DI~~ft~l~~~~--------------------------~~---~~~~~~ln~~~~-~~~~~v~~~~g~~ik~~ 117 (305)
-.+||-+|..+.-.+.+.- ++ ..+.+.|+.|+. .+..++ +++|.++-.=
T Consensus 415 YyAvL~mDGD~MGk~lsg~~~~~~~~~~h~~i~e~l~~~~~~k~~TpsrhaaLSRaL~~Ff~~~V~~Iv-k~~G~vIYaG 493 (693)
T 3ung_C 415 YYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTPQVHVAISQALANFSIREVRSVV-KDEGLLIYAG 493 (693)
T ss_dssp EEEEEEEEESSCC--------------------------------CHHHHHHHHHHHHHHHHTHHHHHH-TTSSEEEEEC
T ss_pred eEEEEEcccccHHHHhcCCCcccchhhcchhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhCcEEEEEc
Confidence 4688889988876665432 11 345677888885 566777 5899999999
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhc
Q psy7235 118 GDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASH 152 (305)
Q Consensus 118 Gd~~~~~~g~~~~~~~~a~~a~~~Al~i~~~~~~~ 152 (305)
||-++++.. ...|..+|.++++.++..
T Consensus 494 GDDfL~llP--------~d~AlelAe~LRe~F~~~ 520 (693)
T 3ung_C 494 GDDVLAILP--------VDKALEVAYKIRKEFGKS 520 (693)
T ss_dssp SSEEEEEEE--------HHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEee--------HHHHHHHHHHHHHHHHHH
Confidence 999999983 367888898988887763
No 29
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=59.89 E-value=1.9 Score=40.06 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred CcEEEEEEeccCcccccccCCHHhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 67 EHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 67 ~~vtvlf~DI~~ft~l~~~~~~~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
...+++++||.+|..+.+.++....-.+|..+-..+...+.. +..+.++-||.+.+++
T Consensus 43 ~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~~~v~R~ggdeF~ill 100 (437)
T 3hvb_A 43 KPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALF 100 (437)
T ss_dssp -----------------------------------------------------------
T ss_pred CceEEEEEEcCcHHHHHHhhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCEEEEEe
Confidence 457899999999999998888766666666666666555543 4566778899988776
No 30
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=49.87 E-value=19 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7235 7 GSKLTDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHM 45 (305)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~ 45 (305)
+++.+++-..|++.++.+|.+..+++.+...+...|++.
T Consensus 53 nTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk 91 (114)
T 2xzr_A 53 NTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSK 91 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999876
No 31
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=43.97 E-value=41 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7235 10 LTDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHM 45 (305)
Q Consensus 10 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~ 45 (305)
-|..|+|+++++..+++..+..+...+......+..
T Consensus 50 KWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~ 85 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999888877665543
No 32
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=28.90 E-value=67 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7235 10 LTDGLRRRMDKLKSSIEEANQAVDQE 35 (305)
Q Consensus 10 ~~~~l~~~~~~~~~~i~~~~~~~~~~ 35 (305)
-|..|+|+++++..+++..+..+..+
T Consensus 33 KWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 33 KWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47889999999999998888876654
No 33
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore, membrane, methylation, photoreceptor protein, receptor; NMR {Natronomonas pharaonis}
Probab=25.69 E-value=19 Score=23.67 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=31.3
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy7235 5 SPGSKLTDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIF 47 (305)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~l 47 (305)
|...+....|..++..+-..+.....+++..++..+.++..+.
T Consensus 19 g~L~~s~n~M~~~L~~~i~~i~~~~~~~e~~~~~~e~~~~~~~ 61 (68)
T 2rm8_A 19 GDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTELL 61 (68)
T ss_dssp SSSCCCTTTHHHHTTSSHHHHHHHHHHHHHHHHGGGCTTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888877777787777778887777776666543
No 34
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=21.94 E-value=1.6e+02 Score=25.34 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=46.9
Q ss_pred EEEEeccCcccccccCCH---HhHHHHHHHHHHHHHHhhhhcCeEEEeeeCceEEEEe
Q psy7235 71 MLFSDIVGFTSICSTATP---FMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125 (305)
Q Consensus 71 vlf~DI~~ft~l~~~~~~---~~~~~~ln~~~~~~~~~v~~~~g~~ik~~Gd~~~~~~ 125 (305)
|..+.|.|+-.+++.+.| .++..+-.+++..+.+.+..+||.+.-+-=|-++++-
T Consensus 4 it~i~i~~Y~~WT~t~g~~RE~~lQ~lQs~l~~~l~~~~~~~~g~~f~~R~D~~ia~t 61 (268)
T 2qv6_A 4 ITVIQIDNYGPWTVTPNPRRESDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAIT 61 (268)
T ss_dssp EEEEEETTHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEEC
T ss_pred EEEEEEcCcccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCEEeecccceEEEEe
Confidence 556788999999998875 4567777899999999999999999999999998875
Done!