RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7235
(305 letters)
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 220 bits (564), Expect = 2e-72
Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 36/225 (16%)
Query: 35 ERETNVSLLHMIFPPDIAKRLWLGESIE-AKTHEHVTMLFSDIVGFTSICSTATPFMVIS 93
E++ LL + P +A++L G S A+++++VT+LFSDIVGFTS+CST+TP V++
Sbjct: 2 EKKKTDRLLDQLLPASVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTSTPEQVVN 61
Query: 94 MLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGL-HKTQSTHAQRIAWMALKMIHTCASH 152
+L +LY++FD + YKV+TIGDAY VA GL + HA+ IA AL M+ +
Sbjct: 62 LLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELKTV 121
Query: 153 -STHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVK 211
H + ++RIG+HTG V+AGVVG++
Sbjct: 122 LVQHREEG--------------------------------LRVRIGIHTGPVVAGVVGIR 149
Query: 212 MPRYCLFGHNVTVANKFESGSEPLRINISPTTYECL-RNTEHFTF 255
MPRYCLFG V +A++ ES +P +I +S TY L R F F
Sbjct: 150 MPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRGGQFVF 194
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 214 bits (546), Expect = 1e-69
Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 38/220 (17%)
Query: 61 IEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDA 120
+ A+++++VT+LF+DIVGFT++ S +P ++ +L +LY +FD + VYKV+TIGDA
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDA 60
Query: 121 YCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLK 180
Y A GL + HAQ +A MAL M+ S + H
Sbjct: 61 YMAASGLPEPSPAHAQTLAEMALDMLEAIKSVNIH------------------------- 95
Query: 181 MRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINIS 240
++R+G+HTG V+AGV+G + PRY ++G V +A++ ES P +I++S
Sbjct: 96 -------SFEGLRVRVGIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHVS 148
Query: 241 PTTYECLRNTEHFTFEPRSRELLP-KGFPENIPGICYFVN 279
TY L+ E F F R + KG E YF+N
Sbjct: 149 EETYRLLKTREQFEFTERGEVEVKGKGKME-----TYFLN 183
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 163 bits (415), Expect = 4e-50
Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGL 127
VT+LF+DIVGFT++ P ++ +L ++ FD + +TIGDA GL
Sbjct: 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGL 60
Query: 128 HKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDS 187
HA+R AL+M A + LR
Sbjct: 61 PGAHEDHAERAVRAALEMQEALAELNAEREGGPPLR------------------------ 96
Query: 188 HLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECL 247
+RIG+HTG V+AGVVG + P Y + G V +A + ES ++P +I +S TYE L
Sbjct: 97 ------LRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELL 150
Query: 248 RNTEHFTFEPRSRELLPKGFPENIPGICYFV 278
+ F FE L KG + Y +
Sbjct: 151 GDAG-FEFEELGEVEL-KGKSGPVR--VYRL 177
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 85.1 bits (211), Expect = 2e-20
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 38/169 (22%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLH 128
VT+LF+DIVGFTS+ P +L L +FD+ + K++TIGD + V GL
Sbjct: 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL- 60
Query: 129 KTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSH 188
H A M ++ + +G P++
Sbjct: 61 ----DHPAAAVAFAEDMREAVSALNQSEGNPVR--------------------------- 89
Query: 189 LAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRI 237
+RIG+HTG V+ GV+G + P+Y ++G V +A++ ES ++ ++
Sbjct: 90 -----VRIGIHTGPVVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQV 132
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 71.4 bits (175), Expect = 1e-14
Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 45/227 (19%)
Query: 46 IFPPDIAKRLWLGESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAF 105
+ + L G + VT+LF+DIVG T + + ++ +L ++
Sbjct: 28 YLARVVGRLLARGGAG----DRRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEV 83
Query: 106 CGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAW-MALKMIHTCASHSTHDGKPIKLRV 164
+ V+ IGD + G A A + L + + A
Sbjct: 84 VARHGGRVVKFIGDGFLAVFGRPSPL-EDAVACALDLQLALRNPLARLRRES-------- 134
Query: 165 STLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTV 224
++RIG+HTG V+ G G Y + G V
Sbjct: 135 ---------------------------LRVRIGIHTGEVVVGNTG----GYTVVGSAVNQ 163
Query: 225 ANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENI 271
A + ES ++P ++ +S TY+ +R+ S L P +
Sbjct: 164 AARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVRV 210
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 60.7 bits (148), Expect = 5e-11
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 11 TDGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRL 55
L++R++KLK +EEA++ +++E++ LL+ + P +A RL
Sbjct: 165 QLKLKKRLEKLKDKLEEAHRELEEEKKKTDDLLYSMLPKSVANRL 209
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 33.3 bits (76), Expect = 0.17
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 193 QMRIGLHTGTVLA---GVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLRN 249
++ G+HTG VLA G P A + ++ +EP +I +S + LR
Sbjct: 387 EIAAGIHTGLVLAQAPHASGGTTP---------NAAVRMQAQAEPGQILVSEAARKLLRR 437
Query: 250 TEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEE 290
H F+P + E + + R P
Sbjct: 438 --HADFDPTALEE---AAAGAESQPVFELLGERAARTPFTS 473
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 30.8 bits (70), Expect = 0.78
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 260 RELLPKGFPENIPGICYFVNDYRHPSLPSEEPLEKHIDRAVEDL 303
R L G P IPG F D RHPS P + R V L
Sbjct: 268 RVALDPGSPSIIPGRVEFSFDARHPSPPV-------LQRLVALL 304
>gnl|CDD|225912 COG3377, COG3377, Uncharacterized conserved protein [Function
unknown].
Length = 95
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 87 TPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGL 127
P + + E Y A CG L+V E +GD G+
Sbjct: 24 APLLALKG-EKGY----AMCGYLNVEAAEKVGDTAVRVVGV 59
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional.
Length = 464
Score = 30.1 bits (68), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 71 MLFSDIVGFTSICSTATPFMVISMLENLYN 100
+ F + GFTS A P MVIS+ + N
Sbjct: 142 LSFMALRGFTSALGRAGPVMVISLAGAVAN 171
>gnl|CDD|238616 cd01289, FabA_like, Domain of unknown function, appears to be
related to a diverse group of beta-hydroxydecanoyl ACP
dehydratases (FabA) and beta-hydroxyacyl ACP
dehydratases (FabZ). This group appears to lack the
conserved active site histidine of FabA and FabZ.
Length = 138
Score = 28.8 bits (65), Expect = 1.8
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 22/91 (24%)
Query: 135 AQRIA-WMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVL-----------RPAVVLKMR 182
AQ IA L + G P R LL R +V+
Sbjct: 57 AQAIAAHGGL--------LARQQGNPP--RPGFLLGSRKYEAHVDRFDLGSTLLIVVAEL 106
Query: 183 WIDDSHLAVFQMRIGLHTGTVLAGVVGVKMP 213
DS L VF+ I G + +G + V P
Sbjct: 107 LQGDSGLGVFECTIEDQGGVLASGRLNVYQP 137
>gnl|CDD|237066 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 29.7 bits (67), Expect = 2.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 21/64 (32%)
Query: 244 YECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPS--LPSEEPLEKHIDRAVE 301
Y LR+ E+F EL+ GF E H S +P+ +EK I+RAV
Sbjct: 63 YTALRDKENFKNN---EELICAGFEE-------------HASFVIPA---IEKVIERAVT 103
Query: 302 DLDE 305
D D+
Sbjct: 104 DSDD 107
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein. Members of this family are
probably coiled-coil proteins that are similar to the
CHD5 (Congenital heart disease 5) protein. In
Saccharomyces cerevisiae this protein localises to the
ER and is thought to play a homeostatic role.
Length = 161
Score = 28.4 bits (64), Expect = 2.7
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 14 LRRRMDKLKSSIEEANQAVDQERETNVSLLHMIF 47
L R++DKL +E+ + + ++ +L +
Sbjct: 71 LNRKLDKLTDELEKLKKELTAQKSKFKWVLKKLR 104
>gnl|CDD|133855 PHA00147, PHA00147, upper collar protein.
Length = 308
Score = 28.6 bits (64), Expect = 4.0
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 232 SEPLRINISPTTYECLRNTEHFTFEPRS-RELLPKGFPENIPGICYFVNDYRHPSLP 287
S L PT Y F+ + +L K G+ + ND R P++
Sbjct: 81 SGQLDHYNQPTGYRASSPGYQNYFKLYNYEDLKEKD-----MGVVIYNNDVREPTID 132
>gnl|CDD|200375 TIGR04124, archaeo_artE, archaeosortase family protein ArtE. This
protein family is related to the predicted
protein-sorting transpeptidase Exosortase (EpsH), with
the Cys, Arg, and His putative active site residues
preserved, but it is strictly archaeal and is not
associated with any known PEP-CTERM-like target
sequence. The immediate gene neighborhood in most
genomes suggests RNA (methylase, cyclase) and cofactor
(thiamine pyrophosphate) metabolism. The function is
unknown. It is designated archaeosortase family protein
ArtE.
Length = 153
Score = 27.7 bits (62), Expect = 5.8
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 63 AKTHEHVTMLFSDIVGFTSICSTATPFMVISMLE 96
A + + L+ DI+G+ I T T +V+ L+
Sbjct: 117 ANMYPENSELYHDIIGYIVI-LTLTVILVLIYLK 149
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 28.3 bits (64), Expect = 5.8
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 25/91 (27%)
Query: 70 TMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAF------C------GQLDVY---KV 114
T F +G+T+I T ++S + KF+ G +Y K
Sbjct: 431 TQSFRPAIGYTAIAKTDNAGAMLS-----HAKFEELNLEFYSYTLYHRTGMFQLYDNIKA 485
Query: 115 ETI--GDAYCVAGGL-HKTQSTHAQRIAWMA 142
+A CV L T S QR A
Sbjct: 486 LPPSNRNARCVV--LTRDTLSFETQRPANTN 514
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
Length = 247
Score = 27.9 bits (62), Expect = 6.7
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 49 PDIAKRLWLGESIEAKTHEHVTML 72
P + +R+ LGE + ++ ++L
Sbjct: 220 PGVMRRICLGEHVGTLINDDASLL 243
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 27.4 bits (61), Expect = 9.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 27 EANQAVDQERETNVSLLHMIFPPDIAKRLWLGESIEAKTHEHVTMLFSD 75
EANQ ++ E + +S L + FP + K I + + V L SD
Sbjct: 260 EANQNLNTESKKVISDLELTFPLEKLKS-IRDGKITLEDLKLVEELISD 307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,517,707
Number of extensions: 1450565
Number of successful extensions: 1347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1343
Number of HSP's successfully gapped: 29
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)