RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7235
(305 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 293 bits (752), Expect = e-100
Identities = 124/246 (50%), Positives = 155/246 (63%), Gaps = 32/246 (13%)
Query: 58 GESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETI 117
G+ ++AK +VTMLFSDIVGFT+ICS +P VI+ML LY +FD CG+LDVYKVETI
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETI 63
Query: 118 GDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAV 177
GDAYCVAGGLHK THA +IA MALKM+ + G+PI
Sbjct: 64 GDAYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGEPI----------------- 106
Query: 178 VLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRI 237
+MRIGLH+G+V AGVVGVKMPRYCLFG+NVT+ANKFES S P +I
Sbjct: 107 ---------------KMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKI 151
Query: 238 NISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEEPLEKHID 297
N+SPTTY L++ F F PRSRE LP FP IPGIC+F++ Y+ + +K ++
Sbjct: 152 NVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQGTNSKPCFQKKDVE 211
Query: 298 RAVEDL 303
+
Sbjct: 212 DGNANF 217
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 239 bits (611), Expect = 9e-80
Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQ-LDVYKVETIG 118
S A+ H T+LFSDIVGFT I S ++P V S+L+ LY +FDA + +YKVETIG
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIG 60
Query: 119 DAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVV 178
DAY V + HA + AL+M + ++ G+P+
Sbjct: 61 DAYMVVCNVTVPCDDHADVLLEFALRMHEEASRVASSLGEPV------------------ 102
Query: 179 LKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRIN 238
++R+G+H+G V+AGVVG KMPR+ LFG V A++ ES E +I+
Sbjct: 103 --------------RIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIH 148
Query: 239 ISPTTYECLRNTEHFTFEPR 258
IS Y CLR+ E F R
Sbjct: 149 ISEACYCCLRSKERFEIRER 168
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 236 bits (603), Expect = 4e-78
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 50/248 (20%)
Query: 58 GESIEAKTHEHVTMLFSDIVGFTSICSTATP----FMVISMLENLYNKFDAFC---GQLD 110
+ AK +++VT+LFS IVGF + CS ++++L +LY +FD
Sbjct: 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPF 61
Query: 111 VYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQV 170
VYKVET+GD Y GL + HA+ I +AL M+ DG+ +
Sbjct: 62 VYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQV-QVDGESV---------- 110
Query: 171 RVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFES 230
Q+ IG+HTG V+ GV+G +MPRYCLFG+ V + ++ E+
Sbjct: 111 ----------------------QITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTET 148
Query: 231 GSEPLRINISPTTYECLRNTEH----FTFEPR-SRELLPKGFPENIPGICYFVNDYRHPS 285
E +IN+S TY CL + E+ F E R + K P + ++
Sbjct: 149 TGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPM-----QVWFLSRKNTG 203
Query: 286 LPSEEPLE 293
+ +
Sbjct: 204 TEETKQDD 211
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 234 bits (600), Expect = 9e-78
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 60 SIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGD 119
+I A ++ ++LF+DIVGFT S+ P ++ L+ LY+ FD Q + K+E GD
Sbjct: 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61
Query: 120 AYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVL 179
+Y V G+ + + H Q +A AL M + A G P+
Sbjct: 62 SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPV------------------- 102
Query: 180 KMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINI 239
+R+GL TG V+AGVVG + RYC++G V VA++ ES +I +
Sbjct: 103 -------------PLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQV 149
Query: 240 SPTTYECLRNTEHFTFEPR 258
YE L+ + F R
Sbjct: 150 PDEVYERLK--DDFVLRER 166
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 232 bits (593), Expect = 2e-76
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 36/219 (16%)
Query: 45 MIFPPDIAKRL--WLGESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKF 102
M DI + + I + H++V++LF+DI GFTS+ S T ++ L L+ +F
Sbjct: 9 MEMKADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARF 68
Query: 103 DAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKL 162
D + +++ +GD Y GL + ++ HA M + MI + G +
Sbjct: 69 DKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-- 126
Query: 163 RVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNV 222
MR+G+H+G V GV+G++ ++ ++ ++V
Sbjct: 127 ------------------------------NMRVGIHSGRVHCGVLGLRKWQFDVWSNDV 156
Query: 223 TVANKFESGSEPLRINISPTTYECLRNTEHFTFEPRSRE 261
T+AN E+G + RI+I+ T L + EP
Sbjct: 157 TLANHMEAGGKAGRIHITKATLSYLNG--DYEVEPGCGG 193
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 185 bits (473), Expect = 2e-58
Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 51/219 (23%)
Query: 58 GESIEAKTHEHVTMLFSDIVGFTSICS----TATPFMVISMLENLYNKFDAFCGQL---D 110
E + ++++ V ++F+ I F + + +L + FD +
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSG 63
Query: 111 VYKVETIGDAYCVAGGLH-----------KTQSTHAQRIAWMALKMIHTCASHSTHDGKP 159
V K++TIG Y A GL + Q H + A ++ + + H
Sbjct: 64 VEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFND 123
Query: 160 IKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFG 219
F++R+G++ G V+AGV+G + P+Y ++G
Sbjct: 124 --------------------------------FKLRVGINHGPVIAGVIGAQKPQYDIWG 151
Query: 220 HNVTVANKFESGSEPLRINISPTTYECLRNTEHFTFEPR 258
+ V VA++ +S +I ++ T L+ +T R
Sbjct: 152 NTVNVASRMDSTGVLDKIQVTEETSLILQTLG-YTCTCR 189
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 137 bits (346), Expect = 2e-39
Identities = 37/240 (15%), Positives = 89/240 (37%), Gaps = 8/240 (3%)
Query: 59 ESIEAKTHEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIG 118
+ + VT++F+DI T++ A P ++ + + + G+ Y+V+T+G
Sbjct: 3 NRAPKEPTDPVTLIFTDIESSTAL-WAAHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVG 61
Query: 119 DAYCVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVV 178
D++ +A AQ + L + + + R + +
Sbjct: 62 DSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMD 121
Query: 179 LKMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRIN 238
++ + L ++R+G+HTG V Y +G +A + ES + ++
Sbjct: 122 PEVYSRLWNGL---RVRVGIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVL 177
Query: 239 ISPTTYECLRNTEHFTFEPRSRELLP-KGFPENIPGICYFVNDYRHPSLPSEEPLEKHID 297
++ Y L + + + + +G + + Y +N + + ++ D
Sbjct: 178 MTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVK--MYQLNTVPSRNFAALRLDREYFD 235
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 128 bits (322), Expect = 3e-34
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 64/298 (21%)
Query: 10 LTDGLRRRMDKLKSSIEEANQAVDQ----ERETNVSLLHMIFPPDIAKRLWLGESIEAKT 65
+ +D K S +Q V ++ L + +
Sbjct: 153 IMRPGATELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPG 212
Query: 66 HEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAG 125
VT+ F+D+VGFT + + + + L V+ ++TIGDA +
Sbjct: 213 ARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAP-PVWFIKTIGDAVMLVC 271
Query: 126 GLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWID 185
+ LK++ + +
Sbjct: 272 PD-------PAPLLDTVLKLVEVVDTDNNF------------------------------ 294
Query: 186 DSHLAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYE 245
++R G+ +G ++ FG V VA++ + P + ++ + E
Sbjct: 295 ------PRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVRE 341
Query: 246 CLRN---TEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSEEPLEKHIDRAV 300
L + + F + +G ++ + V R + + D
Sbjct: 342 ALGDAPEADGFQWSFA-GPRRLRGIRGDVR--LFRV---RRGATRTGSGGAAQDDDLA 393
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 78.0 bits (193), Expect = 2e-17
Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 53/234 (22%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFC-------GQLDVYKVETIGDAY 121
+T+L SD+ GFTS P V+ +L N+Y F G +D + +GD
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVL-NIY--FGKMADVITHHGGTIDEF----MGDGI 67
Query: 122 CVAGGLHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKM 181
V G +Q A R ++M +
Sbjct: 68 LVLFGAPTSQQDDALRAVACGVEMQLALRE---------------------------VNQ 100
Query: 182 RWIDDSHLAVFQMRIGLHTGTVLAGVVG--VKMPRYCLFGHNVTVANKFESGSEPLRINI 239
+ L +M IG++TG V+ G +G + +Y + G V + + ES + +I I
Sbjct: 101 QVTGL-GLQPLEMGIGINTGEVVVGNIGSEKRT-KYGVVGAQVNLTYRIESYTTGGQIFI 158
Query: 240 SPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHP---SLPSEE 290
S TT E + + PKG + + + V P SL EE
Sbjct: 159 SSTTLEAAG--DRVHVNGNRT-VQPKGVKDPVV--IWDVAGVGEPYNLSLAVEE 207
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 76.0 bits (188), Expect = 8e-17
Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 49/213 (23%)
Query: 68 HVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFC-------GQLDVYKVETIGDA 120
+T+ FSDI GFT + + +L N Y + G +D + +GD
Sbjct: 9 KLTVFFSDIRGFTELSEELEAEALTDLL-NNY--LNEMSKIALKYGGTIDKF----VGDC 61
Query: 121 YCVAGG--LHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVV 178
V G + A M + M
Sbjct: 62 VMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKV--------------------------- 94
Query: 179 LKMRWIDDSHLAVFQMRIGLHTGTVLAGVVG--VKMPRYCLFGHNVTVANKFESGSEPLR 236
L+ +W ++R+G++TG G G +M Y + G V +A++ ES SE
Sbjct: 95 LRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTRM-DYTIIGREVNLASRLESASEAGE 153
Query: 237 INISPTTYECLRNTEHFTFEPRSRELLPKGFPE 269
I IS TY ++ + + + + KGF
Sbjct: 154 ILISHETYSLIK--DVIMCRDKGQ-IAVKGFSR 183
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 73.8 bits (182), Expect = 1e-15
Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 45/212 (21%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFC-------GQLDVYKVETIGDAY 121
+T+LFSDIVGFT + + V +L N Y G +D + +GDA
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELL-NEY--LGEMTRAVFENQGTVDKF----VGDAI 80
Query: 122 CVAGG--LHKTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVL 179
G + S +R A +M+ KL
Sbjct: 81 MALYGAPEEMSPSEQVRRAIATARQMLVALE----------KLN------------QGWQ 118
Query: 180 KMRWIDDSHLAVFQMRIGLHTGTVLAGVVGVKMPR--YCLFGHNVTVANKFESGSEPLRI 237
+ + + + + R G+H G + G+ G + R + G +V +A + + + P I
Sbjct: 119 ERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQE-RSDFTAIGPSVNIAARLQEATAPNSI 177
Query: 238 NISPTTYECLRNTEHFTFEPRSRELLPKGFPE 269
+S + + + E + L KG E
Sbjct: 178 MVSAMVAQYVPDEEII----KREFLELKGIDE 205
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 65.4 bits (160), Expect = 5e-13
Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 50/204 (24%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLH 128
T++F+DIVG T + +L+N + +V T GD +
Sbjct: 18 ATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFT-- 75
Query: 129 KTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSH 188
A ++ A+
Sbjct: 76 -----SPSAAIACADDIVDAVAALG----------------------------------- 95
Query: 189 LAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLR 248
++RIG+H G V + G V + + + + P + +S T + +
Sbjct: 96 ---IEVRIGIHAGEVEVRDAS---HGTDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVA 149
Query: 249 NTEHFTFEPRSRELLPKGFPENIP 272
+ F R + L KG P
Sbjct: 150 GSR-HRFAERGEQEL-KGVPGRWR 171
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 59.6 bits (145), Expect = 6e-11
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 45/204 (22%)
Query: 69 VTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLH 128
+L +D+ G++ + ++ D Q V+T GD
Sbjct: 8 CAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-- 65
Query: 129 KTQSTHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSH 188
AQ AL++ + +++
Sbjct: 66 -----TAQAALRCALEIQQAMQQREEDTPRKERIQY------------------------ 96
Query: 189 LAVFQMRIGLHTGTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYECLR 248
RIG++ G ++ +FG V VA + E+ SEP I +S ++ +
Sbjct: 97 ------RIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQ 143
Query: 249 NTEHFTFEPRSRELLPKGFPENIP 272
+ F + + K I
Sbjct: 144 DRVSEPFTDLGLQKV-KNITRPIR 166
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 47.4 bits (113), Expect = 1e-07
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 12 DGLRRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRL 55
L + ++ L ++ +A++ E++ +LL+ + PP +A L
Sbjct: 20 YKLTQELEMLTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANEL 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 40/243 (16%), Positives = 70/243 (28%), Gaps = 70/243 (28%)
Query: 1 MELSSPGSKLTDGLRR-------RMDKLKSSIEE--ANQAVDQERETNVSLLHMIFPPDI 51
LS + DGL DKL + IE + R+ L +FPP
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSA 385
Query: 52 A------KRLWLG------ESIEAKTHEHVTMLFSDIVGFT-SI----CSTATPFMVISM 94
+W + K H++ +++ T SI
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 95 LENL----YNKFDAFCG------QLDVYKVETIGDAYCVAGGLHKTQSTHAQRIA----- 139
L YN F LD Y IG + H H +R+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--H------HLKNIEHPERMTLFRMV 496
Query: 140 -----WMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQM 194
++ K+ H + + ++TL Q++ + +I D+ ++
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSI-----LNTLQQLKFYK-------PYICDND-PKYER 543
Query: 195 RIG 197
+
Sbjct: 544 LVN 546
Score = 41.4 bits (96), Expect = 4e-04
Identities = 45/306 (14%), Positives = 90/306 (29%), Gaps = 85/306 (27%)
Query: 15 RRR-MDKLKSSIEEANQAVDQERETNVSLLH-MIFPPDIAKRLWLGESIEAKTHEHVTML 72
R + KL+ ++ E NV L+ + K W+ +++ V
Sbjct: 133 RLQPYLKLRQALLEL------RPAKNV-LIDGV---LGSGKT-WV--ALDVCLSYKVQCK 179
Query: 73 FSDIVGFTSICSTATPFMVISMLENLYNKFDA-FCGQLDVYKVETIGDAYCVAGGLHKTQ 131
+ + ++ + +P V+ ML+ L + D + + D
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--------------------- 218
Query: 132 STHAQRIAWMALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPA-VVLKMRWIDDSHLA 190
H+ I H I+ + LL+ + +VL +
Sbjct: 219 --HSSNI------------KLRIHS---IQAELRRLLKSKPYENCLLVLLNVQ-NAKAWN 260
Query: 191 VF--QMRIGLHT--GTVLAGVVGVKMPRYCLFGHNVTVANKFESGSEPLRINISPTTYEC 246
F +I L T V + L H+ E + L + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDE--VKSLLLKYLDCRPQD 317
Query: 247 LRNTEHFTFEPRSRELLPKGFPENIPGICYFVND-------YRHPSLPSEEPLEKHIDRA 299
L RE+L P + I + D ++H + + L I+ +
Sbjct: 318 LP-----------REVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC---DKLTTIIESS 362
Query: 300 VEDLDE 305
+ L+
Sbjct: 363 LNVLEP 368
Score = 33.3 bits (75), Expect = 0.098
Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 60/237 (25%)
Query: 31 AVDQERETNVSLLHMI--FPPDIAKRL---WLGESIEAKTHEHVTMLFSDIVGFTSICST 85
+ T++SL H PD K L +L + E + +T
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--------------VLTT 325
Query: 86 ATPFMVISM----LENLYNKFDAFCGQLDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWM 141
P +S+ + + +D + ++ K+ TI ++ + R
Sbjct: 326 N-PR-RLSIIAESIRDGLATWDNW-KHVNCDKLTTIIES-SL-----NVLEPAEYR---- 372
Query: 142 ALKMIHTCASHSTHDGKPIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTG 201
KM + + P ++L + W D V + LH
Sbjct: 373 --KMFDRLS----------------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 202 TVLAGVVGVKMPRYCLFGHNVTVANKFESGSEP-LRINISPTTYECLRNTEHFTFEP 257
+++ K + ++ + K + +E L +I Y + + P
Sbjct: 415 SLVEK--QPKESTISI--PSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIP 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 75/235 (31%)
Query: 13 GLRRRMDKLKSSIEEANQAVDQERETNVSLL----HMIF--PPD--IAKRLWLGESIEAK 64
L + ++++ + + N + ++ +SL+ +++ PP L L +A
Sbjct: 343 NLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-RKAKAP 399
Query: 65 THEHVT-MLFSD-----IVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIG 118
+ + + FS+ F + A+PF S L L D L
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPV---ASPFH--SHL--LVPASDLINKDLV-------- 444
Query: 119 DAYCVAGGLHKTQSTHAQRIAWMA--LKMIHTCASHSTHDGKPIKLR-VSTLLQVRVLRP 175
+++ A ++ + T DG LR +S + R++
Sbjct: 445 ----------------KNNVSFNAKDIQ----IPVYDTFDGS--DLRVLSGSISERIVDC 482
Query: 176 AVVLKMRW-----IDDSHLAVF----QMRIGLHT-----GT----VLAGVVGVKM 212
+ L ++W +H+ F +G+ T GT ++AG + +
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 37.0 bits (85), Expect = 0.008
Identities = 43/272 (15%), Positives = 77/272 (28%), Gaps = 91/272 (33%)
Query: 60 SIE------AKTHEHVTMLFSDIVGFTSICSTATPFMV-----ISMLENLYNKFDAFCGQ 108
S+E + + L F I T + E L KF +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQ---FNKILPEPTEGFAADDEPTTPAE-LVGKFLGY--- 67
Query: 109 LDVYKVETIGDAYCVAGGLHKTQSTHAQRIAWMALKM----------IHTCASHSTHDGK 158
V+ + ++ ++ + L IH A+ +
Sbjct: 68 --------------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 159 PIKLRVSTLLQVRVLRPAVVLKMRWIDDSHL-AVFQMRIGLHTGTVLAGVVGVKMPRYCL 217
++ L+ + A ++ R D A+F+ V G + +
Sbjct: 114 TTLVKTKELI--KNYITARIMAKRPFDKKSNSALFR--------AVGEGNAQL----VAI 159
Query: 218 F---GHNVTVANKFESGSEPLRINISPTTYECL------RNTEHFTFEPRSRE----LLP 264
F G+ FE E LR ++ TY L + E + R+ +
Sbjct: 160 FGGQGNTDDY---FE---E-LR-DLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 265 KGF--------PENIPGICYFVNDYRHP-SLP 287
+G P N P Y ++ P S P
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLS---IPISCP 239
Score = 32.3 bits (73), Expect = 0.26
Identities = 33/237 (13%), Positives = 64/237 (27%), Gaps = 73/237 (30%)
Query: 95 LENLYNKFDAFCGQLDVYKVETIGDAYC-VAGGLHKTQSTHAQRI---AWMALKMIHTCA 150
L +LY + G L ++ + + + Q + W+
Sbjct: 173 LRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-------N 221
Query: 151 SHSTHDGK-----PIKLRVSTLLQVRVLRPAVVLKMRWIDDSHLAVFQMRIGLHTGTV-- 203
+T D PI + ++Q+ +H V +G G +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQL----------------AHYVVTAKLLGFTPGELRS 265
Query: 204 -LAGVVGVKMPRYCLFGHNVTVANKF-ESGSEPLRINISPTTYECL-----RNTEHF--- 253
L G G + A E+ S L R E +
Sbjct: 266 YLKGATGH--------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 254 TFEPR-SRELLPKGFPENIPGICYFVNDYRHPSL----PSEEPLEKHIDRAVEDLDE 305
+ P + L E +P P L ++E ++ ++++ L
Sbjct: 318 SLPPSILEDSLENN--EGVPS----------PMLSISNLTQEQVQDYVNKTNSHLPA 362
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.011
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 19/48 (39%)
Query: 15 RRRMDKLKSSIEEANQAVDQERETNVSLLHMIFPPDIAKRLWLGESIE 62
++ + KL++S++ ++ D A L + ++E
Sbjct: 19 KQALKKLQASLK-------------------LYADDSAPALAIKATME 47
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction,
receptor complex, hydrolase, TR protein, ADP binding,
coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae}
PDB: 3zs8_C
Length = 84
Score = 31.3 bits (70), Expect = 0.080
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 14 LRRRMDKLKSSIEEANQAVDQERETNVSLLH 44
R++D L I + E + + LH
Sbjct: 51 NNRKLDSLDKEINNLKDEIQSENKAFQAHLH 81
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein
insertion, ATP binding, membrane PR binding; HET: ADP;
4.50A {Saccharomyces cerevisiae}
Length = 94
Score = 30.9 bits (69), Expect = 0.13
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 14 LRRRMDKLKSSIEEANQAVDQERETNVSLLH 44
R++D L I + E + + LH
Sbjct: 61 NNRKLDSLDKEINNLKDEIQSENKAFQAHLH 91
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex,
TA-protein biogenesis, GET PA hydrolase-transport
protein complex; 3.30A {Saccharomyces cerevisiae}
Length = 93
Score = 30.9 bits (69), Expect = 0.14
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 14 LRRRMDKLKSSIEEANQAVDQERETNVSLLH 44
R++D L I + E + + LH
Sbjct: 54 NNRKLDSLDKEINNLKDEIQSENKAFQAHLH 84
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex,
TA-protein biogenesis, GET PA hydrolase-transport
protein complex; 3.00A {Saccharomyces cerevisiae} PDB:
3sjc_C
Length = 65
Score = 29.0 bits (64), Expect = 0.36
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 14 LRRRMDKLKSSIEEANQAVDQERET 38
R++D L I + E
Sbjct: 37 NNRKLDSLDKEINNLKDEIQSENHH 61
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 29.9 bits (66), Expect = 0.95
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 230 SGSEPLRINISPTTYECLRNTEHFTFEPRSRELLPKGFPENIPGICYFVNDYRHPSLPSE 289
S P + I+ E +H+ +P K FP+ + FVN + +
Sbjct: 380 SERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKTFPDFLSEHSQFVNLLQWTKDTNG 439
Query: 290 EPLEKHIDR 298
P + +
Sbjct: 440 APRFLKLHK 448
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 3.1
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 2 ELSSPGSK-LTDGLRRR---MDKLKSSIEEANQAVDQERETNV 40
E K L + +R+ ++K K + A++A Q+ + ++
Sbjct: 111 EWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI,
protein structure initiat YORK structural genomics
research consortium; 1.80A {Salmonella typhimurium LT2}
PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Length = 415
Score = 27.7 bits (62), Expect = 4.6
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 75 DIVGFTSICSTATPFMVISMLENLYNKFD---AFCGQLDVYKVETIGDAYCVAGGLHKTQ 131
G+ + A M+++ E+ +D+ + D GGL
Sbjct: 261 QYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQP----DV-GWCGGL---- 311
Query: 132 STHAQRIAWMA----LKMI-HTCASHSTH 155
T IA +A ++ H + +S H
Sbjct: 312 -TTLVEIAALAKSRGQLVVPHGSSVYSHH 339
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding
site, enzyme functio initiative, EFI; HET: SO4; 1.53A
{Proteus mirabilis}
Length = 365
Score = 27.0 bits (59), Expect = 8.5
Identities = 8/57 (14%), Positives = 14/57 (24%)
Query: 65 THEHVTMLFSDIVGFTSICSTATPFMVISMLENLYNKFDAFCGQLDVYKVETIGDAY 121
HEH+ S +V + + + D + I D
Sbjct: 22 PHEHLFNDLSGVVDEPFYEFSHVLVDKKVSADIQWGLKYDPYCCCDNMDKKPIEDVI 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,704,180
Number of extensions: 276625
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 54
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)