BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7238
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VE46|SC5A7_DROME High-affinity choline transporter 1 OS=Drosophila melanogaster
GN=CG7708 PE=2 SV=2
Length = 614
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 104/123 (84%)
Query: 1 MEIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTY 60
MEIIWVMR AI V GIL+T+MALTIPSIYGLWSMCSDLVY ILFPQLLMVVHFK HCNTY
Sbjct: 363 MEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDLVYVILFPQLLMVVHFKKHCNTY 422
Query: 61 GSLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSW 120
GSL+AYI+A +R+SGGE LGL+P I YP YD E QMFPFRTMAML+SL TL SVSW
Sbjct: 423 GSLSAYIVALAIRLSGGEAILGLAPLIKYPGYDEETKEQMFPFRTMAMLLSLVTLISVSW 482
Query: 121 LSK 123
+K
Sbjct: 483 WTK 485
>sp|Q8UWF0|SC5A7_TORMA High-affinity choline transporter 1 OS=Torpedo marmorata GN=CHT1
PE=2 SV=1
Length = 584
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 8/129 (6%)
Query: 2 EIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYG 61
EI+WVMR IF+ G +T MAL SIYGLW + SDLVY I+FPQL+ V+ F NTYG
Sbjct: 378 EIVWVMRITIFLFGGAATSMALLAQSIYGLWYLSSDLVYVIIFPQLISVL-FVKGTNTYG 436
Query: 62 SLAAYIMAFLVRVSGGEPQLGLSPFIYYP----DYDYENSR---QMFPFRTMAMLMSLST 114
S+A YI+ FL+R+SGGEP L + PFIYYP D+ + + Q FPF+TMAML S
Sbjct: 437 SIAGYIIGFLLRISGGEPYLHMQPFIYYPGCYLDHSFGDDPVYVQRFPFKTMAMLFSFLG 496
Query: 115 LASVSWLSK 123
VS+L K
Sbjct: 497 NTGVSYLVK 505
>sp|O02228|SC5A7_CAEEL High-affinity choline transporter 1 OS=Caenorhabditis elegans
GN=cho-1 PE=2 SV=2
Length = 576
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 85/122 (69%), Gaps = 3/122 (2%)
Query: 2 EIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYG 61
E+I VMR AI GI++T+MALTI SIYGLW +C+DLVY ILFPQLL VV+ NTYG
Sbjct: 378 EVIIVMRIAIICVGIMATIMALTIQSIYGLWYLCADLVYVILFPQLLCVVYMPRS-NTYG 436
Query: 62 SLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWL 121
SLA Y + ++R+ GGEP + L F +YP Y + Q FPFRT AML S++T+ VS
Sbjct: 437 SLAGYAVGLVLRLIGGEPLVSLPAFFHYP--MYTDGVQYFPFRTTAMLSSMATIYIVSIQ 494
Query: 122 SK 123
S+
Sbjct: 495 SE 496
>sp|Q9GZV3|SC5A7_HUMAN High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1
SV=1
Length = 580
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 4/125 (3%)
Query: 2 EIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYG 61
EI+WVMR +FV G +T MAL ++YGLW + SDLVY ++FPQLL V+ F NTYG
Sbjct: 376 EIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVL-FVKGTNTYG 434
Query: 62 SLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENS---RQMFPFRTMAMLMSLSTLASV 118
++A Y+ +R++GGEP L L P I+YP Y +++ Q FPF+T+AM+ S T +
Sbjct: 435 AVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICI 494
Query: 119 SWLSK 123
S+L+K
Sbjct: 495 SYLAK 499
>sp|Q9JMD7|SC5A7_RAT High affinity choline transporter 1 OS=Rattus norvegicus GN=Slc5a7
PE=2 SV=1
Length = 580
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 2 EIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYG 61
EI+WVMR +FV G +T MAL ++YGLW + SDLVY I+FPQLL V+ K NTYG
Sbjct: 376 EIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIIIFPQLLCVLFIK-GTNTYG 434
Query: 62 SLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENS---RQMFPFRTMAMLMSLSTLASV 118
++A YI +R++GGEP L L P I+YP Y + + Q FPF+T++M+ S T V
Sbjct: 435 AVAGYIFGLFLRITGGEPYLYLQPLIFYPGYYPDKNGIYNQRFPFKTLSMVTSFFTNICV 494
Query: 119 SWLSK 123
S+L+K
Sbjct: 495 SYLAK 499
>sp|Q8BGY9|SC5A7_MOUSE High affinity choline transporter 1 OS=Mus musculus GN=Slc5a7 PE=1
SV=1
Length = 580
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 2 EIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYG 61
EI+WVMR + V G +T MAL ++YGLW + SDLVY I+FPQLL V+ K NTYG
Sbjct: 376 EIVWVMRITVLVFGASATAMALLTKTVYGLWYLSSDLVYIIIFPQLLCVLFIK-GTNTYG 434
Query: 62 SLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENS---RQMFPFRTMAMLMSLSTLASV 118
++A YI +R++GGEP L L P I+YP Y + + Q FPF+T++M+ S T V
Sbjct: 435 AVAGYIFGLFLRITGGEPYLYLQPLIFYPGYYSDKNGIYNQRFPFKTLSMVTSFFTNICV 494
Query: 119 SWLSK 123
S+L+K
Sbjct: 495 SYLAK 499
>sp|Q8P775|MURD_XANCP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=murD PE=3 SV=1
Length = 468
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 45 PQLLMVVH-FKHHCNTYGSLAAYIMAFLVRVSGGEPQLGL 83
P+L +V++ F H + +GS AAY+ L V+ G P++ L
Sbjct: 186 PELALVLNLFPEHLDWHGSEAAYVRDKLALVTDGRPRIAL 225
>sp|Q4UWX9|MURD_XANC8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=murD PE=3
SV=1
Length = 468
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 45 PQLLMVVH-FKHHCNTYGSLAAYIMAFLVRVSGGEPQLGL 83
P+L +V++ F H + +GS AAY+ L V+ G P++ L
Sbjct: 186 PELALVLNLFPEHLDWHGSEAAYVRDKLALVTDGRPRIAL 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,446,625
Number of Sequences: 539616
Number of extensions: 1439438
Number of successful extensions: 3582
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3562
Number of HSP's gapped (non-prelim): 13
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)