Query psy7238
Match_columns 123
No_of_seqs 113 out of 199
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:37:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3761|consensus 100.0 1.4E-41 2.9E-46 289.1 0.7 122 1-123 385-509 (591)
2 TIGR02121 Na_Pro_sym sodium/pr 99.3 1.4E-11 2.9E-16 105.4 9.3 107 1-123 362-469 (487)
3 PRK09442 panF sodium/panthothe 99.3 2.7E-11 5.9E-16 103.2 9.1 107 1-123 364-471 (483)
4 COG0591 PutP Na+/proline sympo 99.2 2.1E-11 4.6E-16 105.3 7.6 75 1-76 369-444 (493)
5 COG4147 DhlC Predicted symport 99.2 4.6E-11 1E-15 105.0 9.0 116 1-123 387-509 (529)
6 PRK15419 proline:sodium sympor 99.2 8.5E-11 1.8E-15 101.0 9.9 105 1-123 369-474 (502)
7 PRK09395 actP acetate permease 99.2 1E-10 2.2E-15 101.8 9.1 115 1-123 401-521 (551)
8 TIGR02119 panF sodium/pantothe 99.2 1.3E-10 2.9E-15 98.4 9.5 107 1-123 362-469 (471)
9 PRK12488 acetate permease; Pro 99.2 1.4E-10 3E-15 101.2 9.3 114 1-123 399-519 (549)
10 PF00474 SSF: Sodium:solute sy 99.1 8E-11 1.7E-15 97.2 6.0 68 1-69 337-406 (406)
11 TIGR02711 symport_actP cation/ 99.1 5.6E-10 1.2E-14 97.4 9.7 114 1-122 399-518 (549)
12 TIGR03648 Na_symport_lg probab 99.1 7.6E-10 1.6E-14 96.3 10.4 114 1-123 410-536 (552)
13 PRK10484 putative transporter; 99.1 7.1E-10 1.5E-14 95.8 8.6 108 1-123 371-482 (523)
14 TIGR00813 sss transporter, SSS 99.0 7.3E-10 1.6E-14 92.0 5.0 67 2-69 340-407 (407)
15 COG4145 PanF Na+/panthothenate 98.6 4.1E-08 8.8E-13 85.1 4.5 75 2-77 362-437 (473)
16 KOG2349|consensus 96.5 0.0015 3.3E-08 59.0 2.6 109 1-110 375-489 (585)
17 KOG2348|consensus 92.2 0.032 7E-07 50.3 -0.6 77 1-79 393-477 (667)
18 PF11146 DUF2905: Protein of u 82.1 4.4 9.4E-05 27.0 4.9 47 65-117 12-61 (64)
19 PF09515 Thia_YuaJ: Thiamine t 62.6 2.2 4.8E-05 33.2 -0.3 71 15-90 4-77 (177)
20 PF10762 DUF2583: Protein of u 59.9 9 0.0002 27.2 2.4 20 57-76 41-60 (89)
21 PRK10692 hypothetical protein; 58.3 10 0.00022 27.1 2.5 20 57-76 41-60 (92)
22 PF04093 MreD: rod shape-deter 50.7 40 0.00087 24.2 4.7 27 57-84 49-75 (160)
23 TIGR00297 conserved hypothetic 48.7 21 0.00045 29.2 3.2 30 52-81 19-48 (237)
24 PF15099 PIRT: Phosphoinositid 47.3 13 0.00028 28.1 1.7 42 8-55 56-104 (129)
25 COG3859 Predicted membrane pro 40.5 24 0.00053 28.0 2.3 72 12-90 14-86 (185)
26 COG4897 CsbA Uncharacterized p 39.3 22 0.00048 24.6 1.7 30 39-68 5-34 (78)
27 PF13630 SdpI: SdpI/YhfL prote 32.7 31 0.00067 21.9 1.6 23 52-75 22-44 (76)
28 PHA03013 hypothetical protein; 32.5 65 0.0014 23.3 3.3 34 3-36 3-36 (109)
29 PF01940 DUF92: Integral membr 28.7 51 0.0011 26.6 2.5 30 52-81 13-42 (226)
30 PF08570 DUF1761: Protein of u 26.5 48 0.001 23.5 1.8 54 60-121 6-60 (126)
31 PF09964 DUF2198: Uncharacteri 25.5 1.3E+02 0.0028 20.7 3.6 24 41-64 6-29 (74)
32 PF10569 Thiol-ester_cl: Alpha 25.3 6.8 0.00015 22.5 -2.3 13 82-94 1-14 (31)
33 PF14990 DUF4516: Domain of un 24.6 1.2E+02 0.0026 19.1 3.1 32 60-91 15-46 (47)
34 PF08560 DUF1757: Protein of u 24.2 1.2E+02 0.0026 23.2 3.6 41 34-75 36-88 (155)
35 PRK04998 hypothetical protein; 24.2 27 0.00059 23.8 0.2 9 82-90 5-13 (88)
36 PRK10720 uracil transporter; P 23.4 1.7E+02 0.0038 25.2 4.9 34 52-85 174-216 (428)
37 PRK00907 hypothetical protein; 23.2 30 0.00065 24.3 0.2 7 84-90 9-15 (92)
38 PRK00341 hypothetical protein; 22.9 29 0.00063 24.1 0.1 9 83-91 7-15 (91)
39 PRK12452 cardiolipin synthetas 21.5 3.1E+02 0.0066 24.4 6.2 33 49-82 46-85 (509)
40 KOG4491|consensus 21.3 82 0.0018 26.7 2.4 38 38-75 42-80 (323)
No 1
>KOG3761|consensus
Probab=100.00 E-value=1.4e-41 Score=289.09 Aligned_cols=122 Identities=52% Similarity=0.916 Sum_probs=117.3
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEPQ 80 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~~ 80 (123)
||++||||++++++|+.||.||+..+|||+||++|+|++|+++||||+|++|-|+ +|+|||+||+.+|+.+|+.+|||+
T Consensus 385 keii~vmriai~~~g~~at~mal~~ksiyglwyl~adlvyiiifpqllcvl~m~~-sntygalagy~~gl~lri~ggep~ 463 (591)
T KOG3761|consen 385 KEIIIVMRIAIFCFGAMATAMALLIKSIYGLWYLCADLVYIIIFPQLLCVLFMKG-SNTYGALAGYASGLFLRIIGGEPL 463 (591)
T ss_pred ceEEEEEEehhhhhhHHHHHHHHHHHHHHHHHHHhhceeEeEeccceeeEEEecC-CCcchhhhhhheeeEEEEecCcce
Confidence 7999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCcceeCCCc-ccCC--CeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 81 LGLSPFIYYPDY-DYEN--SRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 81 l~lp~~i~~P~~-~~~~--~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
+.+||+++|||+ .+.| |.|+|||||.+|+.|++|++++|++++
T Consensus 464 l~l~~~~~ypg~y~d~ngiy~q~fpfkt~amlss~~t~~~is~~ae 509 (591)
T KOG3761|consen 464 LSLPAFFFYPGMYPDDNGIYNQKFPFKTLAMLSSFATIICISILAE 509 (591)
T ss_pred eecchhhccCccccCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 4444 789999999999999999999999863
No 2
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=99.29 E-value=1.4e-11 Score=105.42 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=86.8
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccc-hhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIP-SIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEP 79 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~-SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~ 79 (123)
||.+|+.|++++++++++..+|+..+ ++.++..+++.+....++|++++++|||| .|+.||++||+.|.+..+.+..+
T Consensus 362 ~~~l~v~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r-~t~~ga~~g~i~G~~~~~~~~~~ 440 (487)
T TIGR02121 362 KELVMVGRLSVLVIAIIAIILAMNPNSSILNLVGYAWAGFGAAFGPVVLFSLYWKR-MTRNGALAGMIIGAVTVIVWISK 440 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999864 89999999988888889999999999999 99999999999999999887522
Q ss_pred CCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 80 QLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 80 ~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
++ +.....| -...+..+++..+++|++++
T Consensus 441 ---------~~-----~~~~~~~-~~~g~~~~~~~~~~~s~~t~ 469 (487)
T TIGR02121 441 ---------LG-----GSFGLYE-IVPGFIISSIVIVVVSKLTK 469 (487)
T ss_pred ---------hc-----cccchhH-hHHHHHHHHHHHHHHHhccC
Confidence 11 0001111 13567888888899998764
No 3
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=99.25 E-value=2.7e-11 Score=103.16 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=83.3
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccch-hHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIPS-IYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEP 79 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~S-Iy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~ 79 (123)
||.+|+.|+++++++++++.+|+..++ +..+..++.+.....++|++++++|||| .|++||++|+++|.++++.+.-
T Consensus 364 ~~~~~v~r~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~lgl~w~r-~~~~ga~~~~i~G~~~~~~~~~- 441 (483)
T PRK09442 364 KKLKRISLIITLILGLLVLLAALKPPDMIIWLNLFAFGGLEAVFLWPIVLGLYWER-ANATGALASMIVGLVSYLLLAT- 441 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHH-
Confidence 467899999999999999999998765 4555556666667789999999999999 9999999999999999988742
Q ss_pred CCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 80 QLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 80 ~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
++ +.| +.. | +.+ ..+.+|+++.+.+|++++
T Consensus 442 -~~-----~~~-~~~-~--~~~----~~~~~s~i~~~~vs~~~~ 471 (483)
T PRK09442 442 -FG-----IKI-FGF-H--PIV----PSLLLSLLAFLIGNLFGT 471 (483)
T ss_pred -hc-----ccc-ccc-c--hHH----HHHHHHHHHHHHHHhccC
Confidence 11 011 110 1 122 478899999999998864
No 4
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=99.23 E-value=2.1e-11 Score=105.34 Aligned_cols=75 Identities=25% Similarity=0.402 Sum_probs=71.5
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHh
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ 76 (123)
||++|+.|+++++++.+|..+|+.. ++++++..+++.++...++|.++.+||||| .|++|+++||++|.++++..
T Consensus 369 k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~~l~~~~~~g~~a~~~p~~~~~L~wkr-~t~~ga~agmi~G~i~~~~~ 444 (493)
T COG0591 369 KELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAGFGAQFLPALLLGLFWKR-ATKRGAIAGMIAGLIVVLLT 444 (493)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHhheeeecc-chHhHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999996 588889999999999999999999999999 99999999999999999995
No 5
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=99.22 E-value=4.6e-11 Score=104.96 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=93.5
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHH--hC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVS--GG 77 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll--~g 77 (123)
||-+++.|+.+++++++|..++..+ ++|..++.++-++.-..+||.+++++|||| .|+.||++||+.|+.+-+. -.
T Consensus 387 ~~~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlglfWKr-~n~~GAi~G~~~GL~~tlv~i~l 465 (529)
T COG4147 387 KKEVRVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGLFWKR-LNTAGAIAGMLLGLIVTLVLIIL 465 (529)
T ss_pred cceehhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHHHHhh-ccHHhHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999996 599999999999999999999999999999 9999999999999876543 23
Q ss_pred CCCCC--CC--cceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 78 EPQLG--LS--PFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 78 e~~l~--lp--~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
.|... .+ |....+++ |+=+--+++|...|+...++|.+++
T Consensus 466 ~~~i~~~~~~~~~~~~~~~------~~~~~g~~sipv~F~~~~ivSllt~ 509 (529)
T COG4147 466 SPTIWVVILGHPGFGWAGF------PYEGPGLFSIPVGFLGAWIVSLLTK 509 (529)
T ss_pred CccccccccCccccccccC------CCCCcchhhhhHHHHHhHheeccCC
Confidence 33222 11 22223333 3345567899999999999998874
No 6
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=99.21 E-value=8.5e-11 Score=101.03 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=85.8
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEP 79 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~ 79 (123)
||.+|+.|++++++++++..+|+.. ++++++...++.+....++|.+++++|||| .|+.||++|+++|.++.+.|..+
T Consensus 369 ~~~l~~~Ri~~v~~~~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~wkr-~t~~ga~~g~i~G~~~~~~~~~~ 447 (502)
T PRK15419 369 KELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSR-MTRNGALAGMIIGALTVIVWKQF 447 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999885 589999999988887888999999999999 99999999999999999987421
Q ss_pred CCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 80 QLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 80 ~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
+ | + ...| -...++.+++..+.+|.+++
T Consensus 448 ----~-----~-~------~~~~-~~~~~~~~~~~~v~~sl~t~ 474 (502)
T PRK15419 448 ----G-----W-L------GLYE-IIPGFIFGSIGIVVFSLLGK 474 (502)
T ss_pred ----h-----h-c------chhH-hHHHHHHHHHHHHHHHhccC
Confidence 0 0 0 0111 23457888989999998764
No 7
>PRK09395 actP acetate permease; Provisional
Probab=99.18 E-value=1e-10 Score=101.81 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=85.8
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhc--cchhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALT--IPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGE 78 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~--~~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge 78 (123)
|+.+++.|+++++++++++.+|+. ++++..++.++.++....++|++++++|||| .|+.||++||++|.++.+...
T Consensus 401 ~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~lllglfwkr-~~~~gA~ag~i~G~~~~l~~~- 478 (551)
T PRK09395 401 RDELRVSKITTLVLGVVAIILGILFEKQNIAFMVGLAFAIAASANFPVLLLSMYWKG-LTTRGAVIGGWLGLISAVVLM- 478 (551)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHHHHHH-
Confidence 467899999999999999999985 3578888888888888899999999999999 999999999999999877542
Q ss_pred CCCCCCccee-CCCcccCCCeeecch---HHHHHHHHHHHHHhhhhccC
Q psy7238 79 PQLGLSPFIY-YPDYDYENSRQMFPF---RTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 79 ~~l~lp~~i~-~P~~~~~~~~q~fPf---rT~~ml~s~~~~~~~S~l~~ 123 (123)
+..|.... .++.+ .+.+|+ --..+..+++..+++|.+++
T Consensus 479 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~vs~~v~~ivS~~t~ 521 (551)
T PRK09395 479 --ILSPTVWVDILGHE----KAIFPYEYPALFSMPLAFVGIWFFSITDN 521 (551)
T ss_pred --HHcchhhhhccccc----cccCCccccHHHHHHHHHHHhheeeecCC
Confidence 00000000 01110 112332 12588899999999998764
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.18 E-value=1.3e-10 Score=98.38 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=81.7
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccchh-HHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIPSI-YGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEP 79 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~SI-y~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~ 79 (123)
||.+|++|+.++++|+++..+|+..+++ ..+..++.......++|++++++|||| .|+.||++|++.|.++++.+.-
T Consensus 362 ~~~~~~~r~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~plllgl~w~r-~t~~ga~~~~i~G~~~~~~~~~- 439 (471)
T TIGR02119 362 SKIKKISMCITLIIGLLVIIAAIKPPDLIIWLNLFAFGGLEAAFIWPIVLGLYWKR-ANATGALASMIVGVGSYITLES- 439 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHHH-
Confidence 4678999999999999999999987654 334446666667788999999999999 9999999999999999988752
Q ss_pred CCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 80 QLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 80 ~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
+++ .| ++. | ..+ ..+..+++..+.+|.+++
T Consensus 440 ---~~~---~~-~~~-~--~~~----~g~~~~~~~~~~~s~~~~ 469 (471)
T TIGR02119 440 ---FKP---KI-FGL-H--NIV----PSLVFALIAFIIGSLFGK 469 (471)
T ss_pred ---Hcc---cc-ccc-c--hHH----HHHHHHHHHHHHhhccCC
Confidence 010 01 111 1 112 377888988888998754
No 9
>PRK12488 acetate permease; Provisional
Probab=99.16 E-value=1.4e-10 Score=101.22 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=84.5
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc--chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC-
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI--PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG- 77 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~--~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g- 77 (123)
||.+++.|++++++++++..+|+.. .++..+..++.+.....++|++++++|||| .|+.||++||++|.++.+..-
T Consensus 399 ~~~l~v~Ri~~vvvgv~a~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~wkr-~t~~ga~ag~i~G~~~~~~~~~ 477 (549)
T PRK12488 399 AQEMRVSKIATLGIGLLAVVLGLMFESQNIAFLSGLVLAIAASVNFPVLFLSMFWKG-LTTRGAVAGSYAGLVSAVVLVV 477 (549)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999973 377888777777777889999999999999 999999999999998775321
Q ss_pred -CCCCCCCcceeCCCcccCCCeeecc---hHHHHHHHHHHHHHhhhhccC
Q psy7238 78 -EPQLGLSPFIYYPDYDYENSRQMFP---FRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 78 -e~~l~lp~~i~~P~~~~~~~~q~fP---frT~~ml~s~~~~~~~S~l~~ 123 (123)
-|....+ +|+.+ ...|| .--..+..+++..+++|.+++
T Consensus 478 ~~~~~~~~----~~~~~----~~~~~~~~~~~~g~~~~~~v~~vvS~~t~ 519 (549)
T PRK12488 478 LGPAVWVN----VLHNA----TALFPYSNPALFSMSLAFLSAWVFSVTDR 519 (549)
T ss_pred hcchhhhh----ccccc----cccCCCcccHHHHHHHHHHHHheeeeCCC
Confidence 0100000 11111 01222 224689999999999998863
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=99.13 E-value=8e-11 Score=97.15 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=59.1
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccch--hHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHH
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIPS--IYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMA 69 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~S--Iy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G 69 (123)
||.+|+.|++++++++++..+|+..++ ++++..++++.....++|++++++|||| .|++||++|+++|
T Consensus 337 ~~~~~~~ri~~~v~~~i~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~gl~wkr-~t~~ga~~~~i~G 406 (406)
T PF00474_consen 337 KQLLRVSRIAIVVIGIIAILLALFFPDSGIIDLILFAFGILAAPFFPPLLLGLYWKR-ATKRGAIAGMIVG 406 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHGGGGGGSSHHHHHHHHHTTTHHHHHHHHHHHHH-TT---HHHHHHHHH--
T ss_pred hhhhhccceeEEeeHHhHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHhhheeeC
Confidence 567899999999999999999998653 8999999999999999999999999999 9999999999988
No 11
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=99.09 E-value=5.6e-10 Score=97.44 Aligned_cols=114 Identities=15% Similarity=0.270 Sum_probs=83.7
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhc-c-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALT-I-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGE 78 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~-~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge 78 (123)
||.+++.|++++++++++..+|+. + .++..++.++.++....++|.+++++|||| .|+.||++|+++|.+..+..--
T Consensus 399 ~~~~~v~Ri~~vv~g~ia~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~Wkr-~n~~GA~ag~i~G~~~~~~~~~ 477 (549)
T TIGR02711 399 RDELRVSKITVLILGVIAIGLGILFENQNIAFMVGLAFSIAASCNFPIILLSMYWSK-LTTRGAMIGGWLGLITAVVLMI 477 (549)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999986 3 478888888888888889999999999999 9999999999999988774331
Q ss_pred --CCCCCCcce--eCCCcccCCCeeecchHHHHHHHHHHHHHhhhhcc
Q psy7238 79 --PQLGLSPFI--YYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLS 122 (123)
Q Consensus 79 --~~l~lp~~i--~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~ 122 (123)
|... .++. .+|.+... .| -.+++..+++..+++|..+
T Consensus 478 ~~p~~~-~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~vs~~~ 518 (549)
T TIGR02711 478 LGPTIW-VQILGHEKPIYPYE-----YP-ALFSMIVAFIGIWFFSITD 518 (549)
T ss_pred cCchhh-hhhccCCccccCCC-----Cc-hhhhhHHHHHHHheeeecC
Confidence 1000 0000 11111111 12 2378888888888888654
No 12
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=99.08 E-value=7.6e-10 Score=96.30 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC--
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG-- 77 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g-- 77 (123)
|+.+|+.|+.++++++++..+|+.. +++.++...+..+....++|++++++|||| .|+.||++|+++|..+++..-
T Consensus 410 ~~~l~~~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~~~~~~~~~~~~~llgl~w~r-~~~~ga~~g~i~G~~~~~~~~~~ 488 (552)
T TIGR03648 410 KQRLLVARIALVVAAVIAGYFGLNPPGFIAQVVAFAFGLAAASFFPALVLGIFWKR-MNREGAIAGMLTGLGFTFSYIVY 488 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999985 589999888888888999999999999999 999999999999999976421
Q ss_pred -CCC----CCCCcceeCCCcccCCCeeecc-----hHHHHHHHHHHHHHhhhhccC
Q psy7238 78 -EPQ----LGLSPFIYYPDYDYENSRQMFP-----FRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 78 -e~~----l~lp~~i~~P~~~~~~~~q~fP-----frT~~ml~s~~~~~~~S~l~~ 123 (123)
++. .+.++.++++ .+++ .-.+.+..+++..+++|.+++
T Consensus 489 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~v~~~v~~~vS~~t~ 536 (552)
T TIGR03648 489 FKPWGFIGTNPGANVPEN--------WWFGISPEGIGLIGMPVNFAVAIVVSLVTP 536 (552)
T ss_pred ccccccccccccccCCcc--------ccccCCcccchHHHHHHHHHHheeeecCCC
Confidence 110 0101111111 1111 135789999999999998763
No 13
>PRK10484 putative transporter; Provisional
Probab=99.05 E-value=7.1e-10 Score=95.81 Aligned_cols=108 Identities=9% Similarity=0.146 Sum_probs=81.5
Q ss_pred CeeehhhHHHHHHHHHHHHHHHh---c-cchhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHh
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMAL---T-IPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl---~-~~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ 76 (123)
||.+|+.|++++++++++..+|+ . +++++++.....+.....++|++++++|||| .|+.||++|++.|.++.+.+
T Consensus 371 ~~~l~v~Ri~~vv~~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl~~~~llgl~wkr-~n~~ga~~g~i~G~~~~~~~ 449 (523)
T PRK10484 371 KQLVKVGKKFGFVLAIISMIVAPLIANAPQGLYSYLQQLNGIYNVPILAIIIVGFFTKR-VPALAAKVALGFGIILYIII 449 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHhCc-CChHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999995 2 3688887776666777778889999999999 99999999999999987765
Q ss_pred CCCCCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 77 GEPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 77 ge~~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
.- +|.++ ......--..++++.+..+++|.+++
T Consensus 450 ~~----------~~~~~----~~~~~~~~~~~~~~~~v~v~vsl~~~ 482 (523)
T PRK10484 450 NF----------VLKFD----IHFLYVLAILFVINVVVMLIIGKIKP 482 (523)
T ss_pred HH----------HhCCC----ccHHHHHHHHHHHHHHHHHHHhcccC
Confidence 31 11111 01111224457788888888998763
No 14
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.96 E-value=7.3e-10 Score=92.00 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=62.1
Q ss_pred eeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHH
Q psy7238 2 EIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMA 69 (123)
Q Consensus 2 el~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G 69 (123)
+.+++.|+.++++++++..++..+ ++++++..++.++....++|++++++|||| .|++||++||++|
T Consensus 340 ~~~~~~r~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~pl~lgl~w~r-~~~~ga~~~~i~G 407 (407)
T TIGR00813 340 KIVMRGRIAVLVAAVIAGFVAAAQGGQVLQYVQEAFGGLGAPFLPVFLLGIFWKR-MNAKGALAGMIAG 407 (407)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcchHHHHHHHHHhcCc-CChHhHHHHhhcC
Confidence 457899999999999999998865 699999999999999999999999999999 9999999999986
No 15
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=98.61 E-value=4.1e-08 Score=85.11 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=68.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHhcc-chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC
Q psy7238 2 EIIWVMRAAIFVTGILSTVMALTI-PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG 77 (123)
Q Consensus 2 el~wV~RisVv~vg~ia~~lAl~~-~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g 77 (123)
++.+.+|++++..+++-+..|+++ +-|.++..+|-.+.-+.|+++++++|||+| .|++||.|+|++|.+..+++-
T Consensus 362 ki~~is~~~t~i~~~l~~i~al~Pp~~iiwlnlfAfggle~~Fl~plvlgLYw~k-aNa~ga~aSMi~g~~~y~~l~ 437 (473)
T COG4145 362 KIKRISMIATLIFGALLLIAALNPPEMIIWLNLFAFGGLEAVFLWPLVLGLYWEK-ANAAGALASMIVGLVLYVLLA 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcceeeeeehhhhcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999997 688899999999999999999999999999 999999999999999888763
No 16
>KOG2349|consensus
Probab=96.54 E-value=0.0015 Score=58.96 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhHhhhhh---hhhhhheeccCCchHHHHHHHHHHHHH--HHH
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCSDLVYCILFP---QLLMVVHFKHHCNTYGSLAAYIMAFLV--RVS 75 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~~SIy~Lw~la~~l~~v~lfP---qLl~~Ly~k~~~N~yGAiag~i~G~~l--rll 75 (123)
||..+.+|+-+++.|+++..++...++-=+.-..+.+.....-+| .++.++++|| +|..||..|++.|.++ |..
T Consensus 375 ~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr-~N~kgA~~Gli~~~~~~~wi~ 453 (585)
T KOG2349|consen 375 RELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLGMFVPR-VNEKGALVGLIAGLLLMLWIS 453 (585)
T ss_pred HHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhccc-cCCcchhHHHHHHHHHHHHHH
Confidence 578899999999999999999998642224444444444444444 3578999999 9999999999999874 666
Q ss_pred hCCCCCCCCcceeCCCccc-CCCeeecchHHHHHHH
Q psy7238 76 GGEPQLGLSPFIYYPDYDY-ENSRQMFPFRTMAMLM 110 (123)
Q Consensus 76 ~ge~~l~lp~~i~~P~~~~-~~~~q~fPfrT~~ml~ 110 (123)
-||....-|+-+++=.++. .++..+-.+.|..+..
T Consensus 454 i~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~ 489 (585)
T KOG2349|consen 454 IGAQIVIAPGCILPDTLPVSVEGCHYLYFAIILFTV 489 (585)
T ss_pred hhhhhccCCccccCCCCCCccccccchhhhhhhhhc
Confidence 7776777776666544421 1233333444444433
No 17
>KOG2348|consensus
Probab=92.21 E-value=0.032 Score=50.35 Aligned_cols=77 Identities=16% Similarity=0.322 Sum_probs=51.1
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc----chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHH----HHHHHHHH
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI----PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLA----AYIMAFLV 72 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~----~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAia----g~i~G~~l 72 (123)
||++++.|.+++.+|..--.+|..- -|+=.+..+-.-+...+-+ +..|.|.||| .|++|++. |.+.|.+.
T Consensus 393 kell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~-pit~~l~~kk-mn~~~~iv~~~lG~i~~Iit 470 (667)
T KOG2348|consen 393 KELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVF-PITLTLLWKK-MNKYGAIVGPPLGSITGIIT 470 (667)
T ss_pred ceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhH-hHHHHHHHHH-hhhhhEeecCcccchhhhhh
Confidence 7999999999999887766666442 1332222222222222233 4678999999 99998865 56777888
Q ss_pred HHHhCCC
Q psy7238 73 RVSGGEP 79 (123)
Q Consensus 73 rll~ge~ 79 (123)
|+.+-..
T Consensus 471 Wl~~ak~ 477 (667)
T KOG2348|consen 471 WLVSAKK 477 (667)
T ss_pred hhhhhhh
Confidence 8876543
No 18
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=82.15 E-value=4.4 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeCCCc---ccCCCeeecchHHHHHHHHHHHHHh
Q psy7238 65 AYIMAFLVRVSGGEPQLGLSPFIYYPDY---DYENSRQMFPFRTMAMLMSLSTLAS 117 (123)
Q Consensus 65 g~i~G~~lrll~ge~~l~lp~~i~~P~~---~~~~~~q~fPfrT~~ml~s~~~~~~ 117 (123)
=.++|.+...... +| +=|-||+ +.+|..=+||+-|...++-++|+++
T Consensus 12 l~v~G~l~~~~~k-----~~-lGrLPGDi~i~~~~~~fyfPi~s~illS~vlslll 61 (64)
T PF11146_consen 12 LIVLGLLLPWLGK-----FG-LGRLPGDIRIRRGNFTFYFPITSSILLSVVLSLLL 61 (64)
T ss_pred HHHHHHHHHHHhh-----CC-CCCCCccEEEEECCEEEEEehHHHHHHHHHHHHHH
Confidence 3556777666633 55 6688996 5667788999999888887777664
No 19
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=62.59 E-value=2.2 Score=33.17 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHHHHHhccchhHHHHH--hhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC-CCCCCCCcceeCC
Q psy7238 15 GILSTVMALTIPSIYGLWS--MCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG-EPQLGLSPFIYYP 90 (123)
Q Consensus 15 g~ia~~lAl~~~SIy~Lw~--la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g-e~~l~lp~~i~~P 90 (123)
+.+..++|+.-+-+ .+.. ...+... .+.|.++.++.|- .++|.++|.+.|++--+.++ ...--.+.++.||
T Consensus 4 ~ai~~ALa~VL~~i-~~~~~P~Ggsisl-~mlPi~l~a~r~G---~~~G~~~G~l~Gll~~~~g~~~~~~p~q~llDY~ 77 (177)
T PF09515_consen 4 IAIMAALALVLSFI-PLFIMPQGGSISL-SMLPIILIAFRRG---WKAGILAGFLYGLLQFLLGPAYIVHPVQVLLDYP 77 (177)
T ss_dssp HHHHHHHHHHHCTS---EEE-TTEE--C-CHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTT-S--SSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHhhccCcccH-HHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHhCCceehhHHHHHHHHH
Confidence 34444454444444 3322 4556666 7999999998764 49999999999998888776 3444455677777
No 20
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=59.94 E-value=9 Score=27.18 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q psy7238 57 CNTYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 57 ~N~yGAiag~i~G~~lrll~ 76 (123)
.=++||+.|+.+|+++|+.+
T Consensus 41 ~~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 41 FLAHGALFSIFIGALLWLVG 60 (89)
T ss_pred HHHhhHHHHHHHHHHHHHhc
Confidence 45789999999999999975
No 21
>PRK10692 hypothetical protein; Provisional
Probab=58.30 E-value=10 Score=27.06 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q psy7238 57 CNTYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 57 ~N~yGAiag~i~G~~lrll~ 76 (123)
.=++||+.|+.+|+++|+.+
T Consensus 41 ~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 41 FFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHHhhHHHHHHHHHHHHHhc
Confidence 45789999999999999975
No 22
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=50.72 E-value=40 Score=24.18 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy7238 57 CNTYGSLAAYIMAFLVRVSGGEPQLGLS 84 (123)
Q Consensus 57 ~N~yGAiag~i~G~~lrll~ge~~l~lp 84 (123)
.|..|+..|++.|++.-+..|+|. |+-
T Consensus 49 ~~~~g~~~~~~~GLl~D~~~~~~l-G~~ 75 (160)
T PF04093_consen 49 GNRAGLWLGFIIGLLQDIYYGGPL-GIY 75 (160)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcc-hHH
Confidence 679999999999999999988764 443
No 23
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=48.68 E-value=21 Score=29.20 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.9
Q ss_pred eeccCCchHHHHHHHHHHHHHHHHhCCCCC
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRVSGGEPQL 81 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrll~ge~~l 81 (123)
|+||.-|..|++++.++|.+.+...|.+..
T Consensus 19 ~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~ 48 (237)
T TIGR00297 19 AYAPLLDPWGYGHAWIMGVIIILFAGFRGL 48 (237)
T ss_pred HHHccCCHhHHHHHHHHHHHHHHHhhHHHH
Confidence 666646999999999999999888877643
No 24
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=47.27 E-value=13 Score=28.07 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhccc------hhHHHHHhhhhhhHhhhhhhhhhh-heecc
Q psy7238 8 RAAIFVTGILSTVMALTIP------SIYGLWSMCSDLVYCILFPQLLMV-VHFKH 55 (123)
Q Consensus 8 RisVv~vg~ia~~lAl~~~------SIy~Lw~la~~l~~v~lfPqLl~~-Ly~k~ 55 (123)
...+++.|++.|.+|++-| ++.++..+|..+ -.|+|+ |=|+.
T Consensus 56 G~vili~GvvvT~vays~n~~~si~~~~G~vlLs~GL------mlL~~~alcW~~ 104 (129)
T PF15099_consen 56 GVVILIAGVVVTAVAYSFNSHGSIISIFGPVLLSLGL------MLLACSALCWKP 104 (129)
T ss_pred hHHHHHHhhHhheeeEeecCCcchhhhehHHHHHHHH------HHHHhhhheehh
Confidence 4678999999999999843 456777777773 345566 66653
No 25
>COG3859 Predicted membrane protein [Function unknown]
Probab=40.52 E-value=24 Score=28.04 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhCCCCCC-CCcceeCC
Q psy7238 12 FVTGILSTVMALTIPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGGEPQLG-LSPFIYYP 90 (123)
Q Consensus 12 v~vg~ia~~lAl~~~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~ge~~l~-lp~~i~~P 90 (123)
-++++.|+++.+.++ | -|....+..+. +-|.++.+..|- =++|-++|.+.|++=-+++.-=.+. .+.+++||
T Consensus 14 AimaAlA~vLSfi~~--~-~~~~ggSvslg-mIPi~liafRrG---~kaG~~tGLl~Gll~~i~G~~Y~lhpsQ~~ldYi 86 (185)
T COG3859 14 AIMAALAMVLSFIPI--Y-DLPQGGSVSLG-MIPILLIAFRRG---LKAGLLTGLLWGLLHLILGKAYILHPSQVLLDYI 86 (185)
T ss_pred HHHHHHHHHHHHccc--c-cccCCCceehH-HHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhCchhhccHHHHHHHhh
Confidence 345667777766654 2 23444444554 789888886554 4889999999998755544322222 34567787
No 26
>COG4897 CsbA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.26 E-value=22 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=23.0
Q ss_pred hHhhhhhhhhhhheeccCCchHHHHHHHHH
Q psy7238 39 VYCILFPQLLMVVHFKHHCNTYGSLAAYIM 68 (123)
Q Consensus 39 ~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~ 68 (123)
+...+||.++.+||-+.-.|+|-|++=+++
T Consensus 5 ~sAlfFPc~LVvLF~riT~n~yVa~vLt~v 34 (78)
T COG4897 5 ISALFFPCLLVVLFARITYNRYVALVLTVV 34 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999999999884499988765443
No 27
>PF13630 SdpI: SdpI/YhfL protein family
Probab=32.67 E-value=31 Score=21.94 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=18.6
Q ss_pred eeccCCchHHHHHHHHHHHHHHHH
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRVS 75 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrll 75 (123)
-||+ +|++++...++.|.+.-+.
T Consensus 22 ~W~~-a~r~~g~~~~~~Gi~~~~~ 44 (76)
T PF13630_consen 22 NWKK-AHRFAGKIFIIGGIVLLII 44 (76)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4788 9999999999888885544
No 28
>PHA03013 hypothetical protein; Provisional
Probab=32.48 E-value=65 Score=23.31 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.3
Q ss_pred eehhhHHHHHHHHHHHHHHHhccchhHHHHHhhh
Q psy7238 3 IIWVMRAAIFVTGILSTVMALTIPSIYGLWSMCS 36 (123)
Q Consensus 3 l~wV~RisVv~vg~ia~~lAl~~~SIy~Lw~la~ 36 (123)
.-|+..+-+.+.-++++.+-+.+-+||+|.+++.
T Consensus 3 ~~~iiniii~i~fiisliiiyfplniyelms~s~ 36 (109)
T PHA03013 3 FKFIINIIIIIAFIISLIIIYFPLNIYELMSFST 36 (109)
T ss_pred eehhhHHHHHHHHHHHHHHhhccchHHHhhhhhe
Confidence 3577888888888889999888999999988764
No 29
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.74 E-value=51 Score=26.62 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=24.4
Q ss_pred eeccCCchHHHHHHHHHHHHHHHHhCCCCC
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRVSGGEPQL 81 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrll~ge~~l 81 (123)
|+||.-+..|++++.++|.+.....|-+.+
T Consensus 13 ~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~ 42 (226)
T PF01940_consen 13 YKKKSLTLSGALAAFLVGTLIYGFGGWPWF 42 (226)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHhhhHHHH
Confidence 666656999999999999988887765543
No 30
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=26.48 E-value=48 Score=23.49 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHH-hCCCCCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhc
Q psy7238 60 YGSLAAYIMAFLVRVS-GGEPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWL 121 (123)
Q Consensus 60 yGAiag~i~G~~lrll-~ge~~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l 121 (123)
-|++++|++|.+-.-- .|++. .+-=|.++||..|.-|-+ .|..+++..++.|+.
T Consensus 6 vaa~~~~~~G~lWY~plFg~~W------~~~~g~~~~~~~~~~~~~--~~~~~~~~~~v~a~~ 60 (126)
T PF08570_consen 6 VAAIAAFVLGFLWYGPLFGKAW------MRAMGITPEDAKKGNPAK--PFIISFLGSLVQAYF 60 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH------HHHcCCCcccccCcchhh--hHHHHHHHHHHHHHH
Confidence 4678888888884433 34432 223334555533433333 777777777776653
No 31
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=25.51 E-value=1.3e+02 Score=20.71 Aligned_cols=24 Identities=29% Similarity=0.503 Sum_probs=17.8
Q ss_pred hhhhhhhhhhheeccCCchHHHHH
Q psy7238 41 CILFPQLLMVVHFKHHCNTYGSLA 64 (123)
Q Consensus 41 v~lfPqLl~~Ly~k~~~N~yGAia 64 (123)
..+||.++.++|-+---|.|.+..
T Consensus 6 Al~~P~lLVvlFtrVT~n~~vg~~ 29 (74)
T PF09964_consen 6 ALFFPCLLVVLFTRVTYNHYVGTI 29 (74)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 448999999999987227776543
No 32
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=25.33 E-value=6.8 Score=22.46 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=8.3
Q ss_pred CCCcceeCC-Cccc
Q psy7238 82 GLSPFIYYP-DYDY 94 (123)
Q Consensus 82 ~lp~~i~~P-~~~~ 94 (123)
++..+|++| ||-|
T Consensus 1 ~l~~Li~~P~GCgE 14 (31)
T PF10569_consen 1 NLDSLIRYPYGCGE 14 (31)
T ss_dssp TGGGGSSS--SSTT
T ss_pred CHHHHHhcCCCcHH
Confidence 456789999 5655
No 33
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=24.58 E-value=1.2e+02 Score=19.08 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeCCC
Q psy7238 60 YGSLAAYIMAFLVRVSGGEPQLGLSPFIYYPD 91 (123)
Q Consensus 60 yGAiag~i~G~~lrll~ge~~l~lp~~i~~P~ 91 (123)
.-++.+|..|.-+.=.--.|-+.||++.+=||
T Consensus 15 ~~s~~sM~aGA~vVH~~ykPdltiP~i~~~~~ 46 (47)
T PF14990_consen 15 VASLLSMLAGASVVHNIYKPDLTIPEIPPKPG 46 (47)
T ss_pred HHHHHHHHhhhHHHHHHhCccCCCCCCCCCCC
Confidence 45788889998888888899999999876553
No 34
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=24.22 E-value=1.2e+02 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=25.2
Q ss_pred hhhhhhHhhh-hhhhhhhheec-----------cCCchHHHHHHHHHHHHHHHH
Q psy7238 34 MCSDLVYCIL-FPQLLMVVHFK-----------HHCNTYGSLAAYIMAFLVRVS 75 (123)
Q Consensus 34 la~~l~~v~l-fPqLl~~Ly~k-----------~~~N~yGAiag~i~G~~lrll 75 (123)
.+++++++.. .|....-.--| | ...+|+++|.++|-++...
T Consensus 36 q~gs~lGsl~~~Pi~~~~~~~~~~~~~~~~~~~~-~~~~G~l~G~~~gp~m~~~ 88 (155)
T PF08560_consen 36 QAGSFLGSLIVGPIYRLLKQPRLNPKELTNRFVK-GGRNGALAGAVLGPVMTYA 88 (155)
T ss_pred HHHHHHHHHHhHHHHHHHhCccccHHHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 5666666666 56543322222 2 4568899999998876554
No 35
>PRK04998 hypothetical protein; Provisional
Probab=24.19 E-value=27 Score=23.81 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=7.5
Q ss_pred CCCcceeCC
Q psy7238 82 GLSPFIYYP 90 (123)
Q Consensus 82 ~lp~~i~~P 90 (123)
.+++.|.||
T Consensus 5 ~~~~~iefP 13 (88)
T PRK04998 5 KLKELLEFP 13 (88)
T ss_pred cccccccCC
Confidence 468899999
No 36
>PRK10720 uracil transporter; Provisional
Probab=23.35 E-value=1.7e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=22.8
Q ss_pred eeccCCchHHHHHHHHHHHHHHHHhC---------CCCCCCCc
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRVSGG---------EPQLGLSP 85 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrll~g---------e~~l~lp~ 85 (123)
+.|+....+..+.|+++|.++-...| +|..++|+
T Consensus 174 ~~kg~~~~~~iLigIvvG~ila~~lG~~d~~~v~~a~~~~lP~ 216 (428)
T PRK10720 174 LFRGFLAIIPILIGVLVGYALSFAMGMVDTTPIIEAHWFALPT 216 (428)
T ss_pred HhccHHHHhHHHHHHHHHHHHHHHhcCCCHHHhhcCccccCCC
Confidence 45542344567899999998877766 34566665
No 37
>PRK00907 hypothetical protein; Provisional
Probab=23.20 E-value=30 Score=24.29 Aligned_cols=7 Identities=14% Similarity=0.296 Sum_probs=5.3
Q ss_pred CcceeCC
Q psy7238 84 SPFIYYP 90 (123)
Q Consensus 84 p~~i~~P 90 (123)
-++|.||
T Consensus 9 ~~liEFP 15 (92)
T PRK00907 9 DHGFQFP 15 (92)
T ss_pred CccEecC
Confidence 3678888
No 38
>PRK00341 hypothetical protein; Provisional
Probab=22.88 E-value=29 Score=24.08 Aligned_cols=9 Identities=44% Similarity=0.563 Sum_probs=7.2
Q ss_pred CCcceeCCC
Q psy7238 83 LSPFIYYPD 91 (123)
Q Consensus 83 lp~~i~~P~ 91 (123)
-+|.|.||.
T Consensus 7 ~~~~ieFPc 15 (91)
T PRK00341 7 KSPKIEFPC 15 (91)
T ss_pred CCcccCCCC
Confidence 468999994
No 39
>PRK12452 cardiolipin synthetase; Reviewed
Probab=21.48 E-value=3.1e+02 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=24.9
Q ss_pred hhheeccCCchHHHHHHH-------HHHHHHHHHhCCCCCC
Q psy7238 49 MVVHFKHHCNTYGSLAAY-------IMAFLVRVSGGEPQLG 82 (123)
Q Consensus 49 ~~Ly~k~~~N~yGAiag~-------i~G~~lrll~ge~~l~ 82 (123)
..+..++ .|...+++=+ ++|.++.++.|++.++
T Consensus 46 ~~i~~~~-r~p~~~~aWl~~i~~~P~~G~~lYl~fG~~~~~ 85 (509)
T PRK12452 46 FVIFIEN-RSPQSTLAWFLVLALLPVVGVLLYSIFGRSRWR 85 (509)
T ss_pred HhHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhhCCCchh
Confidence 3456666 7888887755 5799999999987763
No 40
>KOG4491|consensus
Probab=21.26 E-value=82 Score=26.68 Aligned_cols=38 Identities=13% Similarity=0.459 Sum_probs=26.4
Q ss_pred hhHhhhhhhhhhhh-eeccCCchHHHHHHHHHHHHHHHH
Q psy7238 38 LVYCILFPQLLMVV-HFKHHCNTYGSLAAYIMAFLVRVS 75 (123)
Q Consensus 38 l~~v~lfPqLl~~L-y~k~~~N~yGAiag~i~G~~lrll 75 (123)
..+...-|.++..- |.||-.|.-||++|+++|+++-+.
T Consensus 42 wlFsvvvp~li~~~~lkrkSld~SGa~~G~lV~filtIa 80 (323)
T KOG4491|consen 42 WLFSVVVPVLIVSNGLKRKSLDHSGALGGLLVGFILTIA 80 (323)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHh
Confidence 34445667666544 344425999999999999997663
Done!