Query psy7238
Match_columns 123
No_of_seqs 113 out of 199
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:37:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 99.1 1.6E-10 5.5E-15 98.4 9.4 107 1-123 364-473 (530)
2 2xq2_A Sodium/glucose cotransp 99.1 1.1E-10 3.9E-15 100.6 8.3 107 1-123 393-502 (593)
3 2k1k_A Ephrin type-A receptor 44.2 18 0.00061 20.7 2.5 16 58-73 8-23 (38)
4 2dwf_A Pulmonary surfactant-as 37.9 6.6 0.00023 22.4 -0.0 12 43-54 21-32 (34)
5 2kxa_A Haemagglutinin HA2 chai 36.0 20 0.00067 19.9 1.7 14 60-73 3-16 (30)
6 3p5n_A RIBU, riboflavin uptake 34.6 59 0.002 23.7 4.7 26 50-76 101-126 (189)
7 3rlb_A THIT; S-component, ECF 31.8 1.3E+02 0.0043 22.5 6.3 31 46-76 102-134 (192)
8 2jln_A MHP1; hydantoin, transp 31.7 95 0.0032 25.7 6.0 63 8-75 337-424 (501)
9 1v54_G Cytochrome C oxidase po 30.2 32 0.0011 23.0 2.4 39 52-93 15-54 (85)
10 3qe7_A Uracil permease; uracil 29.0 69 0.0024 26.5 4.7 47 43-90 166-221 (429)
11 2l34_A TYRO protein tyrosine k 27.8 49 0.0017 18.3 2.5 14 60-73 6-19 (33)
12 2y69_G Cytochrome C oxidase po 23.4 50 0.0017 22.6 2.4 39 52-93 27-66 (97)
13 1bts_A BAND 3 anion transport 22.7 62 0.0021 17.1 2.2 19 63-81 8-26 (26)
14 1ssz_A Pulmonary surfactant-as 21.1 22 0.00075 20.0 0.1 12 43-54 21-32 (34)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=99.13 E-value=1.6e-10 Score=98.40 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=82.3
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhcc---chhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALTI---PSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG 77 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~~---~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g 77 (123)
||.+|+.|++++++++++..+|... +++++......+.....++|++++++|||| .|+.||++|+++|.++.+.+.
T Consensus 364 ~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr-~~~~gA~~g~i~G~~~~~~~~ 442 (530)
T 3dh4_A 364 HKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKK-TTSKGAIIGVVASIPFALFLK 442 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999752 366766555555666778999999999999 999999999999999999873
Q ss_pred CCCCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 78 EPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 78 e~~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
- .|+ .+|+ ...--..++.+++..+++|++++
T Consensus 443 ~----~~~--~~~~---------~~~~~~~~~~~~i~~v~vSl~t~ 473 (530)
T 3dh4_A 443 F----MPL--SMPF---------MDQMLYTLLFTMVVIAFTSLSTS 473 (530)
T ss_dssp T----SSS--CCCH---------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H----HcC--CccH---------HHHHHHHHHHHHHHHHHHHhhcC
Confidence 1 111 1110 11223567889999999998864
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=99.13 E-value=1.1e-10 Score=100.57 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=83.1
Q ss_pred CeeehhhHHHHHHHHHHHHHHHhc---cchhHHHHHhhhhhhHhhhhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC
Q psy7238 1 MEIIWVMRAAIFVTGILSTVMALT---IPSIYGLWSMCSDLVYCILFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG 77 (123)
Q Consensus 1 kel~wV~RisVv~vg~ia~~lAl~---~~SIy~Lw~la~~l~~v~lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g 77 (123)
||.+|+.|++++++++++..+|.. .++++++....++.....++|++++++|||| .|+.||++|+++|.++++.+.
T Consensus 393 ~~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~llglfwkr-~~~~gA~~g~i~G~~~~~~~~ 471 (593)
T 2xq2_A 393 HKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKK-TTSKGAIIGVVASIPFALFLK 471 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999973 3689988877777888899999999999999 999999999999999998762
Q ss_pred CCCCCCCcceeCCCcccCCCeeecchHHHHHHHHHHHHHhhhhccC
Q psy7238 78 EPQLGLSPFIYYPDYDYENSRQMFPFRTMAMLMSLSTLASVSWLSK 123 (123)
Q Consensus 78 e~~l~lp~~i~~P~~~~~~~~q~fPfrT~~ml~s~~~~~~~S~l~~ 123 (123)
. +++ .+|+. -.--..++.+++..+++|.+++
T Consensus 472 --~--~~~--~~~~~---------~~~~~~~~~~~iv~v~vSl~t~ 502 (593)
T 2xq2_A 472 --F--MPL--SMPFM---------DQMLYTLLFTMVVIAFTSLSTS 502 (593)
T ss_dssp --H--SSC--CCCHH---------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred --H--HcC--CccHH---------HHHHHHHHHHHHHHHhheeecC
Confidence 1 111 11100 0112456777888888888753
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=44.17 E-value=18 Score=20.70 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHH
Q psy7238 58 NTYGSLAAYIMAFLVR 73 (123)
Q Consensus 58 N~yGAiag~i~G~~lr 73 (123)
..-|++||+++|.++-
T Consensus 8 ls~GaIAGiVvG~v~g 23 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLG 23 (38)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCCCceeeeehHHHHH
Confidence 4689999999998753
No 4
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=37.91 E-value=6.6 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.8
Q ss_pred hhhhhhhhheec
Q psy7238 43 LFPQLLMVVHFK 54 (123)
Q Consensus 43 lfPqLl~~Ly~k 54 (123)
+.|||+|+|-.+
T Consensus 21 ~lPQLvCgLvlr 32 (34)
T 2dwf_A 21 MLPQLVCRLVLR 32 (34)
T ss_dssp CCSHHHHHHHHS
T ss_pred chHHHHHHHHhc
Confidence 789999998653
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=36.00 E-value=20 Score=19.88 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7238 60 YGSLAAYIMAFLVR 73 (123)
Q Consensus 60 yGAiag~i~G~~lr 73 (123)
.||+||+|-|.-.-
T Consensus 3 FGAIAGfieggW~g 16 (30)
T 2kxa_A 3 FGAIAGFIEGGWTG 16 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhhhhhhcCccc
Confidence 69999999876543
No 6
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=34.57 E-value=59 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=19.9
Q ss_pred hheeccCCchHHHHHHHHHHHHHHHHh
Q psy7238 50 VVHFKHHCNTYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 50 ~Ly~k~~~N~yGAiag~i~G~~lrll~ 76 (123)
-+|.|+ .|..+++.|.++|.+.....
T Consensus 101 ~~y~k~-~~~~~~~~~~i~G~~~~~i~ 126 (189)
T 3p5n_A 101 AIYKNK-RSTKSLITGLIIATIVMTIV 126 (189)
T ss_dssp HHHSSS-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 345555 78889999999988876655
No 7
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=31.81 E-value=1.3e+02 Score=22.47 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=21.3
Q ss_pred hhhhhheeccCCc--hHHHHHHHHHHHHHHHHh
Q psy7238 46 QLLMVVHFKHHCN--TYGSLAAYIMAFLVRVSG 76 (123)
Q Consensus 46 qLl~~Ly~k~~~N--~yGAiag~i~G~~lrll~ 76 (123)
.-+++++.||..+ ..+++.|+++|.+.|..+
T Consensus 102 ~GlaG~f~~~~~~~~~~~~~lg~~ig~~~r~~~ 134 (192)
T 3rlb_A 102 LGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFF 134 (192)
T ss_dssp GGGGGGGCCCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhheeccccccHHHHHHHHHHHHHHHHHH
Confidence 3345777765122 378999999999988843
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=31.70 E-value=95 Score=25.73 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhccc-hhHHHHHhhhhhhHhhhhhhhhhhh---ee--ccCC-------------------chHHH
Q psy7238 8 RAAIFVTGILSTVMALTIP-SIYGLWSMCSDLVYCILFPQLLMVV---HF--KHHC-------------------NTYGS 62 (123)
Q Consensus 8 RisVv~vg~ia~~lAl~~~-SIy~Lw~la~~l~~v~lfPqLl~~L---y~--k~~~-------------------N~yGA 62 (123)
|..++++++++++++...+ +. ....-..+..+++++..++ || || . -...|
T Consensus 337 ~~~~~i~~vi~~~i~~~~~~~~----f~~FL~~lg~~l~P~~gI~l~Dy~i~rr-~~~~~~~l~~~~g~y~y~~g~n~~a 411 (501)
T 2jln_A 337 KTGVIVSAVVGLLMMPWQFAGV----LNTFLNLLASALGPLAGIMISDYFLVRR-RRISLHDLYRTKGIYTYWRGVNWVA 411 (501)
T ss_dssp HHHHHHHHHHHHHTCGGGTHHH----HHHHHHHHHHTTHHHHHHHHHHHHTTST-TCCCHHHHTBSSSTTCTBTTBCHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCChHHhhCCCCccccCCCCCHHH
Confidence 6677788999998887752 22 2222234555677777766 54 43 2 12357
Q ss_pred HHHHHHHHHHHHH
Q psy7238 63 LAAYIMAFLVRVS 75 (123)
Q Consensus 63 iag~i~G~~lrll 75 (123)
++++++|.+.-+.
T Consensus 412 ~~a~~~G~~~~~~ 424 (501)
T 2jln_A 412 LAVYAVALAVSFL 424 (501)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776654
No 9
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=30.20 E-value=32 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=26.8
Q ss_pred eeccCCchHHHHHHHHHHHHHHH-HhCCCCCCCCcceeCCCcc
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRV-SGGEPQLGLSPFIYYPDYD 93 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrl-l~ge~~l~lp~~i~~P~~~ 93 (123)
-||+ .+-++|+-++++.++--. .+.| --.|+++.||..+
T Consensus 15 ~Wkk-is~~va~P~v~l~~~n~y~~~~e--~~~pE~~~Y~yl~ 54 (85)
T 1v54_G 15 TWRF-LTFGLALPSVALCTLNSWLHSGH--RERPAFIPYHHLR 54 (85)
T ss_dssp HHHH-HHHHTHHHHHHHHHHHHTTSCSC--CCCCCCCCCTTSS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhccC--CCCCCCCCCchhh
Confidence 4777 777889988777665443 3444 4558888888654
No 10
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=28.97 E-value=69 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=29.2
Q ss_pred hhhhhhhhheeccCCchHHHHHHHHHHHHHHHHhC---------CCCCCCCcceeCC
Q psy7238 43 LFPQLLMVVHFKHHCNTYGSLAAYIMAFLVRVSGG---------EPQLGLSPFIYYP 90 (123)
Q Consensus 43 lfPqLl~~Ly~k~~~N~yGAiag~i~G~~lrll~g---------e~~l~lp~~i~~P 90 (123)
+.-.+++..+.|+....+..+.|+++|.++....| .|.+++|.+ ..|
T Consensus 166 l~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~~d~~~v~~a~~~~lP~~-~~P 221 (429)
T 3qe7_A 166 LAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL-YTP 221 (429)
T ss_dssp HHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHSCSSCCCCC-CCC
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcCCCcccccccccccccCC-CCC
Confidence 33334444455554456789999999988876655 256677663 344
No 11
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=27.78 E-value=49 Score=18.33 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy7238 60 YGSLAAYIMAFLVR 73 (123)
Q Consensus 60 yGAiag~i~G~~lr 73 (123)
-|++||+++|-+.-
T Consensus 6 ~gaIaGIVvgdi~~ 19 (33)
T 2l34_A 6 PGVLAGIVVGDLVL 19 (33)
T ss_dssp THHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHH
Confidence 58999999987654
No 12
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.36 E-value=50 Score=22.63 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=27.1
Q ss_pred eeccCCchHHHHHHHHHHHHHHH-HhCCCCCCCCcceeCCCcc
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRV-SGGEPQLGLSPFIYYPDYD 93 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrl-l~ge~~l~lp~~i~~P~~~ 93 (123)
-||+ -+-++|+-++++.++--. .+.|. -.|+++.||.-+
T Consensus 27 ~Wkk-iS~~va~P~v~l~~~n~y~~~~eh--~~~E~~~Y~yl~ 66 (97)
T 2y69_G 27 TWRF-LTFGLALPSVALCTLNSWLHSGHR--ERPAFIPYHHLR 66 (97)
T ss_dssp HHHH-HHHHTHHHHHHHHHHHHTTSCSCC--CCCCCCCCTTSS
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCchhh
Confidence 4777 677888888877766433 45553 568899999654
No 13
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=22.74 E-value=62 Score=17.06 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q psy7238 63 LAAYIMAFLVRVSGGEPQL 81 (123)
Q Consensus 63 iag~i~G~~lrll~ge~~l 81 (123)
++.-+.|++..+.+|+|+.
T Consensus 8 ~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 8 ISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp HHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcccCC
Confidence 3455667777788999873
No 14
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=21.13 E-value=22 Score=19.97 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.4
Q ss_pred hhhhhhhhheec
Q psy7238 43 LFPQLLMVVHFK 54 (123)
Q Consensus 43 lfPqLl~~Ly~k 54 (123)
+.||++|+|-.+
T Consensus 21 mlpqlvc~lvlr 32 (34)
T 1ssz_A 21 MLPQLVCRLVLR 32 (34)
T ss_dssp CCHHHHHHHHTS
T ss_pred hhHHHHHHHhee
Confidence 689999987543
Done!