Query psy7238
Match_columns 123
No_of_seqs 113 out of 199
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 21:38:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c3da_ a.102.4.4 (A:) C3D, a 29.2 2.1 0.00016 30.1 -2.3 15 82-96 6-21 (294)
2 d1v54g_ f.23.2.1 (G:) Mitochon 21.3 27 0.002 21.8 2.3 48 52-103 15-62 (84)
3 d2joqa1 d.58.54.2 (A:4-89) Hyp 16.7 12 0.00091 22.6 -0.2 7 84-90 7-13 (86)
4 d1rwua_ d.58.54.1 (A:) Hypothe 11.5 24 0.0018 21.2 0.1 8 83-90 5-12 (87)
5 d2dpma_ c.66.1.28 (A:) DNA met 10.3 37 0.0027 23.3 0.8 10 83-92 2-11 (275)
6 d1qled_ f.23.8.1 (D:) Bacteria 8.6 74 0.0054 17.4 1.5 20 3-23 21-40 (43)
7 d1i17a_ d.6.1.1 (A:) Prion-lik 7.7 69 0.005 20.8 1.2 19 78-96 31-49 (107)
8 d1hzfa_ a.102.4.4 (A:) C4adg f 7.1 8.6 0.00063 27.3 -4.1 20 83-102 5-25 (326)
9 d1m56d_ f.23.8.1 (D:) Bacteria 7.0 98 0.0071 16.8 1.5 15 3-17 20-34 (42)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.4 1.7E+02 0.012 14.8 2.2 13 105-117 20-32 (34)
No 1
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.25 E-value=2.1 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=11.5
Q ss_pred CCCcceeCC-CcccCC
Q psy7238 82 GLSPFIYYP-DYDYEN 96 (123)
Q Consensus 82 ~lp~~i~~P-~~~~~~ 96 (123)
+||-+++|| ||.|-+
T Consensus 6 ~L~~L~~yPyGC~EQt 21 (294)
T d1c3da_ 6 RLKHLIVTPSGAGEQN 21 (294)
T ss_dssp GGGGGCCCCCSSTTHH
T ss_pred HHHHHHhCCCCcHHHH
Confidence 588899999 576643
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.25 E-value=27 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=32.7
Q ss_pred eeccCCchHHHHHHHHHHHHHHHHhCCCCCCCCcceeCCCcccCCCeeecch
Q psy7238 52 HFKHHCNTYGSLAAYIMAFLVRVSGGEPQLGLSPFIYYPDYDYENSRQMFPF 103 (123)
Q Consensus 52 y~k~~~N~yGAiag~i~G~~lrll~ge~~l~lp~~i~~P~~~~~~~~q~fPf 103 (123)
-||+ .+-++|+-+++++++-.....|.- -=|++++||..+-.+ ..||.
T Consensus 15 lWkk-is~~va~P~i~l~~~n~~~~~~h~-e~pe~~~Y~yl~IR~--K~FpW 62 (84)
T d1v54g_ 15 TWRF-LTFGLALPSVALCTLNSWLHSGHR-ERPAFIPYHHLRIRT--KPFSW 62 (84)
T ss_dssp HHHH-HHHHTHHHHHHHHHHHHTTSCSCC-CCCCCCCCTTSSCCS--SCCSS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccccc-cCCCCCCCchhhhhc--cccCC
Confidence 3777 788899999998888776655443 347888898654332 33665
No 3
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}
Probab=16.70 E-value=12 Score=22.56 Aligned_cols=7 Identities=57% Similarity=1.151 Sum_probs=5.2
Q ss_pred CcceeCC
Q psy7238 84 SPFIYYP 90 (123)
Q Consensus 84 p~~i~~P 90 (123)
+|.|.||
T Consensus 7 ~~~iefP 13 (86)
T d2joqa1 7 KPTIIYP 13 (86)
T ss_dssp CCCCCSS
T ss_pred CCceecC
Confidence 4667888
No 4
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}
Probab=11.49 E-value=24 Score=21.19 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=5.8
Q ss_pred CCcceeCC
Q psy7238 83 LSPFIYYP 90 (123)
Q Consensus 83 lp~~i~~P 90 (123)
+-++|.||
T Consensus 5 ldeliefP 12 (87)
T d1rwua_ 5 LNELLEFP 12 (87)
T ss_dssp SSCSSCCC
T ss_pred hhhhccCC
Confidence 45678899
No 5
>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.28 E-value=37 Score=23.30 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=8.4
Q ss_pred CCcceeCCCc
Q psy7238 83 LSPFIYYPDY 92 (123)
Q Consensus 83 lp~~i~~P~~ 92 (123)
+.|+|+|||-
T Consensus 2 mkp~lry~Gg 11 (275)
T d2dpma_ 2 LQPFTKWTGG 11 (275)
T ss_dssp CCCSSCCTTC
T ss_pred CCCcccCCCc
Confidence 6789999985
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=8.60 E-value=74 Score=17.44 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=13.2
Q ss_pred eehhhHHHHHHHHHHHHHHHh
Q psy7238 3 IIWVMRAAIFVTGILSTVMAL 23 (123)
Q Consensus 3 l~wV~RisVv~vg~ia~~lAl 23 (123)
+-|+.|.+++.++++ ..||+
T Consensus 21 i~~~t~~~i~~i~~l-iflAi 40 (43)
T d1qled_ 21 IKGATWVSILSIAVL-VFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 458889888877654 33444
No 7
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.72 E-value=69 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=14.3
Q ss_pred CCCCCCCcceeCCCcccCC
Q psy7238 78 EPQLGLSPFIYYPDYDYEN 96 (123)
Q Consensus 78 e~~l~lp~~i~~P~~~~~~ 96 (123)
|..-..|.-|||++|++.+
T Consensus 31 eNy~ryPdqVyY~~~se~~ 49 (107)
T d1i17a_ 31 ANYWQFPDGIYYEGCSEAN 49 (107)
T ss_dssp HHGGGSCSEEECCCCSSTT
T ss_pred HHHHhCCCccccCcccccc
Confidence 3445679999999997654
No 8
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.09 E-value=8.6 Score=27.33 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=11.5
Q ss_pred CCcceeCC-CcccCCCeeecc
Q psy7238 83 LSPFIYYP-DYDYENSRQMFP 102 (123)
Q Consensus 83 lp~~i~~P-~~~~~~~~q~fP 102 (123)
|--+++|| ||.|-+-..++|
T Consensus 5 l~~L~~yPyGC~EQt~s~~~p 25 (326)
T d1hzfa_ 5 VASLLRLPRGCGEQTMIYLAP 25 (326)
T ss_dssp HHTTCCCCCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHH
Confidence 44578999 575533234444
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.01 E-value=98 Score=16.84 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.8
Q ss_pred eehhhHHHHHHHHHH
Q psy7238 3 IIWVMRAAIFVTGIL 17 (123)
Q Consensus 3 l~wV~RisVv~vg~i 17 (123)
+-|+.|.+++.++++
T Consensus 20 ik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 20 VRMVTWAAVVIVAAL 34 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888888777654
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=6.38 E-value=1.7e+02 Score=14.82 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q psy7238 105 TMAMLMSLSTLAS 117 (123)
Q Consensus 105 T~~ml~s~~~~~~ 117 (123)
+++|+..|+.++.
T Consensus 20 slamlfvfialia 32 (34)
T d1xmeb2 20 SLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5678888777654
Done!