Query psy724
Match_columns 92
No_of_seqs 115 out of 1016
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:40:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 7.9E-37 1.7E-41 242.6 6.1 89 3-91 462-554 (821)
2 COG5022 Myosin heavy chain [Cy 100.0 7E-37 1.5E-41 248.4 5.5 91 2-92 427-522 (1463)
3 cd01383 MYSc_type_VIII Myosin 100.0 1.2E-36 2.5E-41 238.3 6.4 89 3-91 365-457 (677)
4 cd01387 MYSc_type_XV Myosin mo 100.0 1.4E-36 3E-41 237.8 6.8 89 3-91 361-453 (677)
5 cd01381 MYSc_type_VII Myosin m 100.0 2.7E-36 5.8E-41 236.1 6.9 89 3-91 362-454 (671)
6 cd01382 MYSc_type_VI Myosin mo 100.0 2.3E-36 5.1E-41 237.7 6.2 89 3-91 397-489 (717)
7 cd01384 MYSc_type_XI Myosin mo 100.0 2.8E-36 6.2E-41 236.0 6.5 89 3-91 367-459 (674)
8 cd01385 MYSc_type_IX Myosin mo 100.0 2.6E-36 5.7E-41 236.7 6.3 89 3-91 376-469 (692)
9 cd01379 MYSc_type_III Myosin m 100.0 3.8E-36 8.2E-41 234.6 6.2 89 3-91 373-465 (653)
10 cd01378 MYSc_type_I Myosin mot 100.0 6.6E-36 1.4E-40 234.0 6.4 89 3-91 366-460 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 1.3E-35 2.9E-40 232.8 6.6 89 3-91 374-467 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 2.4E-35 5.1E-40 231.3 6.3 88 3-91 368-459 (691)
13 smart00242 MYSc Myosin. Large 100.0 6E-35 1.3E-39 228.7 6.3 89 3-91 369-461 (677)
14 cd00124 MYSc Myosin motor doma 100.0 2.6E-34 5.7E-39 225.1 5.7 89 3-91 362-454 (679)
15 PF00063 Myosin_head: Myosin h 100.0 1.5E-33 3.2E-38 220.7 5.3 90 2-91 363-457 (689)
16 cd01386 MYSc_type_XVIII Myosin 100.0 2.8E-33 6E-38 221.4 6.1 90 3-92 373-487 (767)
17 KOG0161|consensus 100.0 1.1E-32 2.3E-37 230.2 4.7 90 2-92 447-541 (1930)
18 KOG0163|consensus 100.0 1.8E-30 4E-35 202.8 5.6 89 3-91 451-543 (1259)
19 KOG0164|consensus 100.0 1.5E-30 3.2E-35 202.3 3.9 89 3-91 375-468 (1001)
20 KOG0160|consensus 99.9 8.5E-28 1.8E-32 190.6 5.4 88 3-91 368-459 (862)
21 KOG0162|consensus 99.9 4.2E-27 9.1E-32 183.5 3.8 86 3-88 383-473 (1106)
22 KOG4229|consensus 99.9 3.6E-26 7.9E-31 184.5 2.7 89 3-91 427-519 (1062)
23 KOG2655|consensus 63.5 8 0.00017 29.4 2.8 30 5-34 81-115 (366)
24 KOG1547|consensus 57.9 18 0.0004 26.6 3.8 45 5-50 106-156 (336)
25 COG5019 CDC3 Septin family pro 57.7 15 0.00033 28.0 3.4 30 4-33 83-117 (373)
26 cd01850 CDC_Septin CDC/Septin. 52.4 23 0.00049 25.4 3.5 29 5-33 65-98 (276)
27 PF00735 Septin: Septin; Inte 47.3 25 0.00055 25.4 3.1 30 5-34 65-99 (281)
28 COG2153 ElaA Predicted acyltra 40.2 16 0.00034 24.5 1.1 29 24-52 117-145 (155)
29 cd01852 AIG1 AIG1 (avrRpt2-ind 28.4 37 0.00079 22.5 1.4 10 4-13 50-59 (196)
30 PF04548 AIG1: AIG1 family; I 27.9 36 0.00079 23.1 1.3 10 4-13 50-59 (212)
31 KOG3901|consensus 23.8 51 0.0011 20.8 1.3 20 14-33 33-52 (109)
32 PF00350 Dynamin_N: Dynamin fa 20.1 50 0.0011 20.9 0.7 9 5-13 103-111 (168)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=7.9e-37 Score=242.64 Aligned_cols=89 Identities=33% Similarity=0.480 Sum_probs=87.0
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|
T Consensus 462 ~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lL 541 (821)
T PTZ00014 462 VFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSIL 541 (821)
T ss_pred ceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHH
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 542 DEec~~p~~tD~~ 554 (821)
T PTZ00014 542 EDQCLAPGGTDEK 554 (821)
T ss_pred HHHhCCCCCCHHH
Confidence 9999999999975
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=7e-37 Score=248.44 Aligned_cols=91 Identities=45% Similarity=0.851 Sum_probs=87.2
Q ss_pred CCEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhc-CCCcccc
Q psy724 2 FPIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLC 76 (92)
Q Consensus 2 ~~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~ 76 (92)
.+|||||||||| .||||||||||||||||++|++|+|..||++|.+|||.|.+++|.||++|+|||++ .|.|||+
T Consensus 427 ~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIls 506 (1463)
T COG5022 427 SNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILS 506 (1463)
T ss_pred ccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHh
Confidence 479999999999 99999999999999999999999999999999999999999999999999999996 3889999
Q ss_pred cchHhhhccCcCCCCC
Q psy724 77 VLDDQAKLLMAYETLV 92 (92)
Q Consensus 77 lLdee~~~p~~td~~~ 92 (92)
+|||||..|.|||+++
T Consensus 507 lLDEE~~~p~atd~s~ 522 (1463)
T COG5022 507 LLDEECVMPHATDESF 522 (1463)
T ss_pred hhcHHhcCCCCCchHH
Confidence 9999999999999863
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.2e-36 Score=238.25 Aligned_cols=89 Identities=47% Similarity=0.843 Sum_probs=87.0
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|
T Consensus 365 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lL 444 (677)
T cd01383 365 RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLL 444 (677)
T ss_pred ceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHh
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 445 dee~~~p~~tD~~ 457 (677)
T cd01383 445 DEESTFPNATDLT 457 (677)
T ss_pred HHHHcCCCCCHHH
Confidence 9999999999975
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.4e-36 Score=237.81 Aligned_cols=89 Identities=47% Similarity=0.772 Sum_probs=87.0
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|
T Consensus 361 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lL 440 (677)
T cd01387 361 LSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRIL 440 (677)
T ss_pred ceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHH
Confidence 57999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 441 dee~~~p~~td~~ 453 (677)
T cd01387 441 DDQCCFPQATDHT 453 (677)
T ss_pred HHHhcCCCCchHH
Confidence 9999999999975
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.7e-36 Score=236.06 Aligned_cols=89 Identities=45% Similarity=0.818 Sum_probs=87.0
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||++||.|||++|
T Consensus 362 ~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lL 441 (671)
T cd01381 362 NSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLI 441 (671)
T ss_pred ceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceec
Confidence 57999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 442 Dee~~~p~~td~~ 454 (671)
T cd01381 442 DEESKFPKGTDQT 454 (671)
T ss_pred hHhhcCCCCCHHH
Confidence 9999999999975
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.3e-36 Score=237.69 Aligned_cols=89 Identities=37% Similarity=0.710 Sum_probs=86.9
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||+|.+++|.||++|+|||++||.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 477 Dee~~~p~~tD~~ 489 (717)
T cd01382 477 DEENRLPQPSDQH 489 (717)
T ss_pred HHHhcCCCCCHHH
Confidence 9999999999975
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.8e-36 Score=235.97 Aligned_cols=89 Identities=45% Similarity=0.783 Sum_probs=87.0
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|
T Consensus 367 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lL 446 (674)
T cd01384 367 SLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALL 446 (674)
T ss_pred eEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHH
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 447 dee~~~p~~td~~ 459 (674)
T cd01384 447 DEACMFPKSTHET 459 (674)
T ss_pred HHHHcCCCCCHHH
Confidence 9999999999975
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.6e-36 Score=236.70 Aligned_cols=89 Identities=53% Similarity=0.949 Sum_probs=86.6
Q ss_pred CEEEEeeccCc----C-ccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCccccc
Q psy724 3 PIIGIISLFML----I-LGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (92)
Q Consensus 3 ~~IgILDi~GF----~-n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~l 77 (92)
.+||||||||| . ||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|++||++||.|||++
T Consensus 376 ~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~l 455 (692)
T cd01385 376 LSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYL 455 (692)
T ss_pred eEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 57999999999 5 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhhhccCcCCCC
Q psy724 78 LDDQAKLLMAYETL 91 (92)
Q Consensus 78 Ldee~~~p~~td~~ 91 (92)
|||||++|++||++
T Consensus 456 Ldee~~~p~~td~~ 469 (692)
T cd01385 456 LDEESNFPHATSQT 469 (692)
T ss_pred hHHHhcCCCCCHHH
Confidence 99999999999975
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.8e-36 Score=234.64 Aligned_cols=89 Identities=45% Similarity=0.783 Sum_probs=86.8
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|
T Consensus 373 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lL 452 (653)
T cd01379 373 LNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALL 452 (653)
T ss_pred ceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHH
Confidence 47999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 453 dee~~~~~~td~~ 465 (653)
T cd01379 453 DEESRFPQATDQT 465 (653)
T ss_pred HHHhcCCCCCHHH
Confidence 9999999999975
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6.6e-36 Score=233.97 Aligned_cols=89 Identities=38% Similarity=0.745 Sum_probs=86.7
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhc-CCCccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 77 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~l 77 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++ +|.|||++
T Consensus 366 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~l 445 (674)
T cd01378 366 KVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSI 445 (674)
T ss_pred ceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHH
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred chHhhhcc-CcCCCC
Q psy724 78 LDDQAKLL-MAYETL 91 (92)
Q Consensus 78 Ldee~~~p-~~td~~ 91 (92)
|||||++| ++||++
T Consensus 446 Ldee~~~p~~~tD~~ 460 (674)
T cd01378 446 LDDVCATPHEGTDQT 460 (674)
T ss_pred HHHHHcCCCCCChHH
Confidence 99999999 999975
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.3e-35 Score=232.80 Aligned_cols=89 Identities=43% Similarity=0.791 Sum_probs=86.4
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCccccccc-CChHHHHHHHhcCCCccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 77 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~l 77 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||.|..++| .||++|++||++||.|||++
T Consensus 374 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~l 453 (693)
T cd01377 374 YFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSL 453 (693)
T ss_pred ceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhh
Confidence 58999999999 89999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred chHhhhccCcCCCC
Q psy724 78 LDDQAKLLMAYETL 91 (92)
Q Consensus 78 Ldee~~~p~~td~~ 91 (92)
|||||++|++||++
T Consensus 454 Ldee~~~~~~tD~~ 467 (693)
T cd01377 454 LDEECVFPKATDKT 467 (693)
T ss_pred hhHHhcCCCCCHHH
Confidence 99999999999975
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.4e-35 Score=231.34 Aligned_cols=88 Identities=48% Similarity=0.868 Sum_probs=85.3
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
++||||||||| .||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|
T Consensus 368 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lL 446 (691)
T cd01380 368 SFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLL 446 (691)
T ss_pred ceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHh
Confidence 58999999999 89999999999999999999999999999999999999999999999999999996 69999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 447 dee~~~p~~td~~ 459 (691)
T cd01380 447 DEECRLPKGSDES 459 (691)
T ss_pred HHhhcCCCCChHH
Confidence 9999999999975
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=6e-35 Score=228.68 Aligned_cols=89 Identities=49% Similarity=0.946 Sum_probs=86.8
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|++||+++|.|||++|
T Consensus 369 ~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lL 448 (677)
T smart00242 369 YFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLL 448 (677)
T ss_pred eEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHH
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 449 dee~~~~~~td~~ 461 (677)
T smart00242 449 DEECRFPKATDQT 461 (677)
T ss_pred HHHhcCCCCCHHH
Confidence 9999999999975
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.6e-34 Score=225.12 Aligned_cols=89 Identities=51% Similarity=0.897 Sum_probs=86.8
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.+||||||||| .|+||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.||+++|
T Consensus 362 ~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lL 441 (679)
T cd00124 362 LFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLL 441 (679)
T ss_pred ceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHH
Confidence 58999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|++||++
T Consensus 442 dee~~~~~~~d~~ 454 (679)
T cd00124 442 DEECLFPKGTDET 454 (679)
T ss_pred HHHhCCCCCCHHH
Confidence 9999999999975
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.98 E-value=1.5e-33 Score=220.68 Aligned_cols=90 Identities=51% Similarity=0.928 Sum_probs=83.3
Q ss_pred CCEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCccccccc-CChHHHHHHHhcCCCcccc
Q psy724 2 FPIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 76 (92)
Q Consensus 2 ~~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~ 76 (92)
.++||||||||| .|+||||||||||||||++|++++|..++++|.+|||.|..++| .||++|++||+++|.|||+
T Consensus 363 ~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~ 442 (689)
T PF00063_consen 363 SSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILS 442 (689)
T ss_dssp SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHH
T ss_pred cccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHH
Confidence 468999999999 89999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchHhhhccCcCCCC
Q psy724 77 VLDDQAKLLMAYETL 91 (92)
Q Consensus 77 lLdee~~~p~~td~~ 91 (92)
+|||||++|++||++
T Consensus 443 lLdee~~~~~~sd~~ 457 (689)
T PF00063_consen 443 LLDEECLLPRGSDES 457 (689)
T ss_dssp HHHHHCTSTTS-HHH
T ss_pred HhhhhhhcccchhhH
Confidence 999999999999864
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.98 E-value=2.8e-33 Score=221.44 Aligned_cols=90 Identities=28% Similarity=0.408 Sum_probs=83.1
Q ss_pred CEEEEeeccCc----C------ccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCccccccc-CChHHHHHHHhcCC
Q psy724 3 PIIGIISLFML----I------LGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP 71 (92)
Q Consensus 3 ~~IgILDi~GF----~------n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p 71 (92)
.+||||||||| . ||||||||||||||||++|++++|..++++|.+|||+|+...+ .||++|++||+++|
T Consensus 373 ~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p 452 (767)
T cd01386 373 ASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAP 452 (767)
T ss_pred cEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccc
Confidence 58999999999 2 8999999999999999999999999999999999999986555 79999999999865
Q ss_pred --------------CcccccchHhhhccCcCCCCC
Q psy724 72 --------------NGLLCVLDDQAKLLMAYETLV 92 (92)
Q Consensus 72 --------------~Gll~lLdee~~~p~~td~~~ 92 (92)
.|||++|||||++|++||+++
T Consensus 453 ~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f 487 (767)
T cd01386 453 QQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTF 487 (767)
T ss_pred ccccccchhhccCCCchhhhhhHhhcCCCCcHHHH
Confidence 599999999999999999763
No 17
>KOG0161|consensus
Probab=99.97 E-value=1.1e-32 Score=230.17 Aligned_cols=90 Identities=43% Similarity=0.778 Sum_probs=86.8
Q ss_pred CCEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCccccccc-CChHHHHHHHhcCCCcccc
Q psy724 2 FPIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 76 (92)
Q Consensus 2 ~~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~ 76 (92)
.+|||||||+|| .||||||||||+||+||++|+++.|..++++|.+|||.|.+++| .|-++|++||+ +|+||+|
T Consensus 447 ~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~s 525 (1930)
T KOG0161|consen 447 DYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILS 525 (1930)
T ss_pred CCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHHH
Confidence 589999999999 89999999999999999999999999999999999999999999 79999999999 5889999
Q ss_pred cchHhhhccCcCCCCC
Q psy724 77 VLDDQAKLLMAYETLV 92 (92)
Q Consensus 77 lLdee~~~p~~td~~~ 92 (92)
+|||||++|+|||.++
T Consensus 526 lLdEEc~~PkAtd~tf 541 (1930)
T KOG0161|consen 526 LLDEECVVPKATDKTF 541 (1930)
T ss_pred HHHHHHhcCCCccchH
Confidence 9999999999999874
No 18
>KOG0163|consensus
Probab=99.96 E-value=1.8e-30 Score=202.81 Aligned_cols=89 Identities=43% Similarity=0.743 Sum_probs=86.5
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
.|||||||+|| +|||||||||||||+||++|++++++.+|+.|..||+.++.+.|.||++|++||+.|..|||.+|
T Consensus 451 ~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlL 530 (1259)
T KOG0163|consen 451 FFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLL 530 (1259)
T ss_pred ceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhh
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
|||+++|+++++.
T Consensus 531 DEEaklP~~s~qh 543 (1259)
T KOG0163|consen 531 DEEAKLPKPSYQH 543 (1259)
T ss_pred hhhccCCCcchHH
Confidence 9999999999864
No 19
>KOG0164|consensus
Probab=99.96 E-value=1.5e-30 Score=202.26 Aligned_cols=89 Identities=38% Similarity=0.705 Sum_probs=84.5
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
+.||+|||||| .|||||||||||||+||+.|.+.+++.||+||.+|||+|.+++|.+|..++||++.+..||++||
T Consensus 375 ~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlail 454 (1001)
T KOG0164|consen 375 TVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAIL 454 (1001)
T ss_pred eEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhh
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccC-cCCCC
Q psy724 79 DDQAKLLM-AYETL 91 (92)
Q Consensus 79 dee~~~p~-~td~~ 91 (92)
||||+.|+ .||.+
T Consensus 455 De~Cl~~G~vtD~t 468 (1001)
T KOG0164|consen 455 DEACLRPGTVTDET 468 (1001)
T ss_pred hHHhcCCCccchHH
Confidence 99999987 55543
No 20
>KOG0160|consensus
Probab=99.94 E-value=8.5e-28 Score=190.63 Aligned_cols=88 Identities=50% Similarity=0.887 Sum_probs=85.9
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
++||||||||| .|+||||||||+||+||+.|.+|+|+.++++|..|+|+|..++|.||++|+++|++ |.|++++|
T Consensus 368 ~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Ll 446 (862)
T KOG0160|consen 368 RFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALL 446 (862)
T ss_pred ceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhcc
Confidence 68999999999 99999999999999999999999999999999999999999999999999999996 99999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
||||++|+++|++
T Consensus 447 de~c~lp~~t~~~ 459 (862)
T KOG0160|consen 447 DEECMLPKGTDET 459 (862)
T ss_pred chhccCCCCCcch
Confidence 9999999999976
No 21
>KOG0162|consensus
Probab=99.93 E-value=4.2e-27 Score=183.54 Aligned_cols=86 Identities=40% Similarity=0.716 Sum_probs=81.2
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhc-CCCccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 77 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~l 77 (92)
.+||||||||| .|||||+||||.||+||+.|.+.+++.||++|.+|||.|.++.|.||.-++|||+. .|.|||++
T Consensus 383 ~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ 462 (1106)
T KOG0162|consen 383 YSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSA 462 (1106)
T ss_pred cceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHH
Confidence 47999999999 89999999999999999999999999999999999999999999999999999986 58999999
Q ss_pred chHhhhccCcC
Q psy724 78 LDDQAKLLMAY 88 (92)
Q Consensus 78 Ldee~~~p~~t 88 (92)
|||.|....|.
T Consensus 463 ldD~~At~Ha~ 473 (1106)
T KOG0162|consen 463 LDDVCATAHAD 473 (1106)
T ss_pred HHHHHHHhccc
Confidence 99999876654
No 22
>KOG4229|consensus
Probab=99.92 E-value=3.6e-26 Score=184.54 Aligned_cols=89 Identities=51% Similarity=0.893 Sum_probs=86.8
Q ss_pred CEEEEeeccCc----CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy724 3 PIIGIISLFML----ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 78 (92)
Q Consensus 3 ~~IgILDi~GF----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lL 78 (92)
-+||||||||| .|+|||+|+|+|||++|.+|++++|..++++|..|+|.|..+.|.||..|+++|..||+||+.+|
T Consensus 427 ~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~li 506 (1062)
T KOG4229|consen 427 LSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLI 506 (1062)
T ss_pred ceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhee
Confidence 36999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCcCCCC
Q psy724 79 DDQAKLLMAYETL 91 (92)
Q Consensus 79 dee~~~p~~td~~ 91 (92)
|||+.+|++||++
T Consensus 507 Dees~fP~~td~t 519 (1062)
T KOG4229|consen 507 DEESRFPKATDQT 519 (1062)
T ss_pred cccCcCCchHHHH
Confidence 9999999999986
No 23
>KOG2655|consensus
Probab=63.47 E-value=8 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=21.5
Q ss_pred EEEeeccCc----CccH-HHHHHhhhhhhHHHHHH
Q psy724 5 IGIISLFML----ILGF-EQLCINYANEHLQYYFN 34 (92)
Q Consensus 5 IgILDi~GF----~n~~-eql~iN~~nE~l~~~~~ 34 (92)
+.|+|+||| -|+. .+-+++|..++..+|+.
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLD 115 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHh
Confidence 678999999 3332 25666888888887763
No 24
>KOG1547|consensus
Probab=57.95 E-value=18 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=28.1
Q ss_pred EEEeeccCc------CccHHHHHHhhhhhhHHHHHHHhhhhhhHhhhhhcCC
Q psy724 5 IGIISLFML------ILGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 50 (92)
Q Consensus 5 IgILDi~GF------~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi 50 (92)
+.|+|+||| .|.+ +-.+-|.||+--+|...-+-...++....-.+
T Consensus 106 ltviDTPGfGDqInN~ncW-ePI~kyIneQye~yL~eElni~R~kripDTRV 156 (336)
T KOG1547|consen 106 LTVIDTPGFGDQINNDNCW-EPIEKYINEQYEQYLREELNIAREKRIPDTRV 156 (336)
T ss_pred EEEecCCCcccccCccchh-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceE
Confidence 679999999 3344 45668999988777654444333333333333
No 25
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=57.65 E-value=15 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=20.0
Q ss_pred EEEEeeccCc----CccH-HHHHHhhhhhhHHHHH
Q psy724 4 IIGIISLFML----ILGF-EQLCINYANEHLQYYF 33 (92)
Q Consensus 4 ~IgILDi~GF----~n~~-eql~iN~~nE~l~~~~ 33 (92)
.+.|+|+||| .|+. .+-.++|..++..+|+
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl 117 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYL 117 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 3789999999 3321 2455577777766655
No 26
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=52.44 E-value=23 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEeeccCc----Ccc-HHHHHHhhhhhhHHHHH
Q psy724 5 IGIISLFML----ILG-FEQLCINYANEHLQYYF 33 (92)
Q Consensus 5 IgILDi~GF----~n~-~eql~iN~~nE~l~~~~ 33 (92)
+.|+|+||| .|+ --+-.++|..++...+.
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 789999999 222 22556677777776655
No 27
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=47.33 E-value=25 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEeeccCc----CccH-HHHHHhhhhhhHHHHHH
Q psy724 5 IGIISLFML----ILGF-EQLCINYANEHLQYYFN 34 (92)
Q Consensus 5 IgILDi~GF----~n~~-eql~iN~~nE~l~~~~~ 34 (92)
+.|+|+||| .|+. -+..++|..++...+..
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~ 99 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLE 99 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 679999999 2322 24666888887776543
No 28
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=40.17 E-value=16 Score=24.51 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHhhhhhhHhhhhhcCCcc
Q psy724 24 YANEHLQYYFNQHVFQYEQEEYNKEGIRW 52 (92)
Q Consensus 24 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~~ 52 (92)
-|++.||.+|.++-|....++|.+.||+-
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 47889999999999999999999999963
No 29
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=28.37 E-value=37 Score=22.49 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=8.8
Q ss_pred EEEEeeccCc
Q psy724 4 IIGIISLFML 13 (92)
Q Consensus 4 ~IgILDi~GF 13 (92)
-|-|+|+|||
T Consensus 50 ~i~viDTPG~ 59 (196)
T cd01852 50 RVNVIDTPGL 59 (196)
T ss_pred EEEEEECcCC
Confidence 4789999999
No 30
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=27.90 E-value=36 Score=23.09 Aligned_cols=10 Identities=20% Similarity=0.105 Sum_probs=6.8
Q ss_pred EEEEeeccCc
Q psy724 4 IIGIISLFML 13 (92)
Q Consensus 4 ~IgILDi~GF 13 (92)
.|-|+|+|||
T Consensus 50 ~v~VIDTPGl 59 (212)
T PF04548_consen 50 QVTVIDTPGL 59 (212)
T ss_dssp EEEEEE--SS
T ss_pred EEEEEeCCCC
Confidence 3789999999
No 31
>KOG3901|consensus
Probab=23.80 E-value=51 Score=20.80 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.6
Q ss_pred CccHHHHHHhhhhhhHHHHH
Q psy724 14 ILGFEQLCINYANEHLQYYF 33 (92)
Q Consensus 14 ~n~~eql~iN~~nE~l~~~~ 33 (92)
.+-+|.+.++|.+|..|...
T Consensus 33 v~~Le~iV~~Yi~elt~~a~ 52 (109)
T KOG3901|consen 33 VDLLEDIVLEYITELTHAAM 52 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999866644
No 32
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=20.13 E-value=50 Score=20.85 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=8.3
Q ss_pred EEEeeccCc
Q psy724 5 IGIISLFML 13 (92)
Q Consensus 5 IgILDi~GF 13 (92)
+-++|+||+
T Consensus 103 ~~lvDtPG~ 111 (168)
T PF00350_consen 103 LTLVDTPGL 111 (168)
T ss_dssp EEEEEEEEB
T ss_pred eEEEeCCcc
Confidence 679999999
Done!