RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy724
(92 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 72.4 bits (177), Expect = 4e-17
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 16 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 76 CVLDDQAKL 84
+LD+ +
Sbjct: 449 SLLDEACLI 457
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 68.6 bits (167), Expect = 7e-16
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 17 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 76
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485
Query: 77 VLDDQAKLLMA 87
+L+++ A
Sbjct: 486 ILEEECMFPKA 496
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 67.8 bits (165), Expect = 1e-15
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 17 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 76
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483
Query: 77 VLDDQAKLLMA 87
+L+++ A
Sbjct: 484 ILEEECMFPKA 494
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 67.1 bits (163), Expect = 3e-15
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 16 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 72
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 397 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 456
Query: 73 GLLCVLDDQAKLLMA 87
G+L +LD++ A
Sbjct: 457 GVLALLDEECWFPKA 471
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 64.8 bits (157), Expect = 1e-14
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 17 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 76
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445
Query: 77 VLDDQAKL 84
+LD++ K+
Sbjct: 446 LLDEECKM 453
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 62.0 bits (150), Expect = 1e-13
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 16 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 73
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477
Query: 74 LLCVLDDQAKLLMA 87
+L +LD+Q+ A
Sbjct: 478 ILALLDEQSVFPNA 491
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 0.82
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 22 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 60
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate
reductoisomerase, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 22.8 bits (49), Expect = 6.4
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 2 FPIIGIISLFMLILGFEQLCINYANEHLQYYFNQHVFQY 40
+P + + +N ANE F ++
Sbjct: 15 YPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRF 53
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 23.3 bits (49), Expect = 7.2
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 23 NYANEHLQYYFNQHVFQYEQEEYNKEGIRWRH 54
+ + + +YYF + + + E +GI W
Sbjct: 201 HAGHLNGKYYFGGNYRKTDVEFPYDDGIIWAT 232
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 22.8 bits (49), Expect = 8.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 47 KEGIRWRHIEFSD 59
G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 22.8 bits (49), Expect = 9.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 47 KEGIRWRHIEFSD 59
K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 22.8 bits (49), Expect = 9.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 47 KEGIRWRHIEFSD 59
K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.145 0.448
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,577
Number of extensions: 13851
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 19
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)