BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7241
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VE46|SC5A7_DROME High-affinity choline transporter 1 OS=Drosophila melanogaster
GN=CG7708 PE=2 SV=2
Length = 614
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 32 NVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75
VYFQRVLSSK+A +AQ+LSYVAA GC++MA+PPV+IGAIAK+T
Sbjct: 243 QVYFQRVLSSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKAT 286
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 31/32 (96%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+SAAVMSSADSSVLSA+SMFARNVYKLIFRQ
Sbjct: 328 VSAAVMSSADSSVLSAASMFARNVYKLIFRQK 359
>sp|Q9GZV3|SC5A7_HUMAN High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1
SV=1
Length = 580
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 34 YFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
YFQRVLSS SAT AQ+LS++AAFGCL+MA+P ++IGAI STD
Sbjct: 257 YFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTD 299
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+SAAVMSSADSS+LSASSMFARN+Y+L FRQN
Sbjct: 340 VSAAVMSSADSSILSASSMFARNIYQLSFRQN 371
>sp|O02228|SC5A7_CAEEL High-affinity choline transporter 1 OS=Caenorhabditis elegans
GN=cho-1 PE=2 SV=2
Length = 576
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 31 QNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
VYFQRVLSSK+A AQ LS+VA GC++MA+PP +IGAIA++TD
Sbjct: 250 WQVYFQRVLSSKTAHGAQTLSFVAGVGCILMAIPPALIGAIARNTD 295
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVL 39
+SAAVMSSADSSVLSA+SMFA N++KL R + + V+
Sbjct: 342 VSAAVMSSADSSVLSAASMFAHNIWKLTIRPHASEKEVI 380
>sp|Q8UWF0|SC5A7_TORMA High-affinity choline transporter 1 OS=Torpedo marmorata GN=CHT1
PE=2 SV=1
Length = 584
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 39/44 (88%)
Query: 33 VYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
VYFQRVLS+ SAT AQ+LS++AAFGC++MA+P V+IGAI STD
Sbjct: 258 VYFQRVLSASSATYAQVLSFLAAFGCVLMAIPSVLIGAIGTSTD 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+SAAVMSSADSS+LSASSMFARN+Y L FRQ
Sbjct: 342 VSAAVMSSADSSILSASSMFARNIYHLAFRQE 373
>sp|Q8BGY9|SC5A7_MOUSE High affinity choline transporter 1 OS=Mus musculus GN=Slc5a7 PE=1
SV=1
Length = 580
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 34 YFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
YFQRVLSS SAT AQ+LS++AAFGCL+MA+P + IGAI STD
Sbjct: 257 YFQRVLSSSSATYAQVLSFLAAFGCLVMALPAICIGAIGASTD 299
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+SAAVMSSADSS+LSASSMFARN+Y+L FRQN
Sbjct: 340 VSAAVMSSADSSILSASSMFARNIYQLSFRQN 371
>sp|Q9JMD7|SC5A7_RAT High affinity choline transporter 1 OS=Rattus norvegicus GN=Slc5a7
PE=2 SV=1
Length = 580
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 34 YFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
YFQRVLSS SAT AQ+LS++AAFGCL+MA+P + IGAI STD
Sbjct: 257 YFQRVLSSSSATYAQVLSFLAAFGCLVMALPAICIGAIGASTD 299
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+SAAVMSSADSS+LSASSMFARN+Y+L FRQN
Sbjct: 340 VSAAVMSSADSSILSASSMFARNIYQLSFRQN 371
>sp|P31637|SC5A3_CANFA Sodium/myo-inositol cotransporter OS=Canis familiaris GN=SLC5A3
PE=2 SV=1
Length = 718
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFR 30
M AA+MS DS SAS++F +VYKLI R
Sbjct: 371 MIAALMSDLDSIFNSASTIFTLDVYKLIRR 400
>sp|P53794|SC5A3_HUMAN Sodium/myo-inositol cotransporter OS=Homo sapiens GN=SLC5A3 PE=3
SV=2
Length = 718
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLI 28
M AA+MS DS SAS++F +VYKLI
Sbjct: 371 MIAALMSDLDSIFNSASTIFTLDVYKLI 398
>sp|P53793|SC5A3_BOVIN Sodium/myo-inositol cotransporter OS=Bos taurus GN=SLC5A3 PE=3 SV=1
Length = 718
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLI 28
M AA+MS DS SAS++F +VYKLI
Sbjct: 371 MIAALMSDLDSIFNSASTIFTLDVYKLI 398
>sp|Q9JKZ2|SC5A3_MOUSE Sodium/myo-inositol cotransporter OS=Mus musculus GN=Slc5a3 PE=1
SV=2
Length = 718
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLI 28
M AA+MS DS SAS++F +VYKLI
Sbjct: 371 MIAALMSDLDSIFNSASTIFTLDVYKLI 398
>sp|B5XT62|Y013_KLEP3 Putative transport protein KPK_0013 OS=Klebsiella pneumoniae
(strain 342) GN=KPK_0013 PE=3 SV=1
Length = 553
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 45 TQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSLAFC 84
TQ + LS++A +G I A+P + +G +A+ K+ L C
Sbjct: 459 TQGEGLSWIA-YGIFITAIPLLTVGILARMLAKMNYLTLC 497
>sp|A6TFY7|Y4047_KLEP7 Putative transport protein KPN78578_40470 OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=KPN78578_40470 PE=3 SV=1
Length = 553
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 45 TQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSLAFC 84
TQ LS++A +G I A+P + +G +A+ K+ L C
Sbjct: 459 TQGDGLSWIA-YGIFITAIPLLTVGVLARMLAKMNYLTLC 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.128 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,725,500
Number of Sequences: 539616
Number of extensions: 412141
Number of successful extensions: 1699
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 19
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)