Query psy7241
Match_columns 84
No_of_seqs 112 out of 209
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3761|consensus 99.8 7.4E-22 1.6E-26 158.6 5.1 68 14-81 238-308 (591)
2 KOG3761|consensus 98.1 1.7E-07 3.7E-12 76.3 -2.4 55 1-74 350-404 (591)
3 TIGR00813 sss transporter, SSS 98.0 1.2E-05 2.7E-10 61.9 5.7 46 30-75 218-263 (407)
4 PRK09442 panF sodium/panthothe 98.0 3.6E-05 7.9E-10 61.0 7.5 46 30-75 252-297 (483)
5 PRK10484 putative transporter; 97.9 2.9E-05 6.2E-10 62.4 6.0 46 30-75 259-304 (523)
6 PRK09395 actP acetate permease 97.6 9E-05 2E-09 60.1 5.3 46 30-75 278-323 (551)
7 TIGR02119 panF sodium/pantothe 97.6 0.00014 3E-09 57.4 5.3 46 30-75 251-296 (471)
8 PF00474 SSF: Sodium:solute sy 97.5 0.00015 3.2E-09 55.6 4.1 44 30-73 217-260 (406)
9 PRK12488 acetate permease; Pro 97.4 0.00032 6.9E-09 57.1 5.6 45 30-74 276-320 (549)
10 TIGR02121 Na_Pro_sym sodium/pr 97.4 0.00044 9.6E-09 55.1 5.8 45 30-74 246-290 (487)
11 TIGR02711 symport_actP cation/ 97.0 0.00084 1.8E-08 54.7 4.2 45 30-74 276-320 (549)
12 TIGR03648 Na_symport_lg probab 96.9 0.0038 8.2E-08 50.7 7.3 43 30-72 254-296 (552)
13 PRK15419 proline:sodium sympor 95.5 0.029 6.3E-07 45.0 5.3 41 30-73 250-293 (502)
14 TIGR02119 panF sodium/pantothe 94.1 0.089 1.9E-06 41.6 4.5 28 2-29 328-355 (471)
15 COG4145 PanF Na+/panthothenate 93.7 0.21 4.6E-06 41.3 6.1 44 3-56 328-372 (473)
16 PRK15419 proline:sodium sympor 93.6 0.19 4.2E-06 40.4 5.7 55 3-63 336-391 (502)
17 TIGR02121 Na_Pro_sym sodium/pr 93.6 0.2 4.3E-06 40.1 5.6 56 2-63 328-384 (487)
18 COG0591 PutP Na+/proline sympo 93.0 0.24 5.3E-06 40.1 5.4 32 2-33 335-366 (493)
19 PRK10484 putative transporter; 92.1 0.37 8.1E-06 38.9 5.4 28 2-29 337-364 (523)
20 KOG2349|consensus 91.9 0.19 4.2E-06 42.6 3.6 42 30-71 255-296 (585)
21 PRK09442 panF sodium/panthothe 89.9 0.96 2.1E-05 36.0 5.7 29 2-30 329-357 (483)
22 TIGR03648 Na_symport_lg probab 89.9 0.71 1.5E-05 37.6 5.0 56 2-63 376-432 (552)
23 TIGR00813 sss transporter, SSS 89.0 1.1 2.3E-05 34.7 5.2 28 3-30 305-332 (407)
24 PF00474 SSF: Sodium:solute sy 88.4 0.22 4.8E-06 38.2 1.1 28 3-30 303-330 (406)
25 TIGR02711 symport_actP cation/ 87.7 1.4 3E-05 36.2 5.3 56 3-63 365-421 (549)
26 PRK09395 actP acetate permease 87.7 1.2 2.5E-05 36.4 4.9 56 3-63 367-423 (551)
27 COG0591 PutP Na+/proline sympo 85.4 3.6 7.7E-05 33.4 6.5 36 28-63 248-287 (493)
28 PRK12488 acetate permease; Pro 84.3 2.6 5.7E-05 34.5 5.4 55 3-63 365-421 (549)
29 COG4146 Predicted symporter [G 82.9 1.4 3E-05 37.0 3.2 56 20-75 248-306 (571)
30 cd02431 Ferritin_CCC1_C CCC1-r 62.0 12 0.00025 26.3 3.3 20 49-68 68-87 (149)
31 PF03904 DUF334: Domain of unk 58.6 12 0.00027 28.7 3.1 28 51-78 196-224 (230)
32 COG4618 ArpD ABC-type protease 57.7 42 0.0009 29.0 6.4 45 21-65 34-80 (580)
33 cd01059 CCC1_like CCC1-related 53.3 18 0.00039 24.7 3.0 30 39-70 53-82 (143)
34 PF12911 OppC_N: N-terminal TM 52.0 17 0.00037 20.6 2.4 38 30-70 4-41 (56)
35 PF06686 SpoIIIAC: Stage III s 43.8 53 0.0011 19.2 3.7 26 41-66 22-47 (58)
36 PF03609 EII-Sor: PTS system s 42.8 1.4E+02 0.0031 22.3 7.8 57 14-70 102-160 (238)
37 PF02411 MerT: MerT mercuric t 42.6 48 0.001 22.6 3.8 41 41-81 4-44 (116)
38 COG3090 DctM TRAP-type C4-dica 37.9 1.5E+02 0.0032 21.0 7.2 72 9-80 36-121 (177)
39 COG4147 DhlC Predicted symport 36.7 54 0.0012 28.0 3.9 58 3-65 354-411 (529)
40 TIGR02872 spore_ytvI sporulati 33.6 1.7E+02 0.0038 21.4 5.9 27 49-75 218-245 (341)
41 COG3838 VirB2 Type IV secretor 32.8 81 0.0018 21.5 3.7 44 30-81 37-80 (108)
42 PRK03545 putative arabinose tr 30.9 79 0.0017 23.5 3.6 50 30-82 314-363 (390)
43 PF14325 DUF4383: Domain of un 30.7 70 0.0015 21.9 3.1 31 39-69 63-93 (125)
44 COG2807 CynX Cyanate permease 29.5 68 0.0015 26.4 3.3 40 41-80 326-366 (395)
45 PF07225 NDUF_B4: NADH-ubiquin 29.5 71 0.0015 22.2 3.0 30 43-80 79-108 (125)
46 PF05230 MASE2: MASE2 domain; 29.1 1E+02 0.0022 20.1 3.5 36 32-67 44-84 (91)
47 KOG2349|consensus 28.9 63 0.0014 27.8 3.1 57 3-72 343-399 (585)
48 TIGR00881 2A0104 phosphoglycer 28.8 94 0.002 21.9 3.6 39 42-80 340-378 (379)
49 KOG4085|consensus 28.5 1.8E+02 0.0038 21.4 5.0 55 13-70 59-118 (175)
50 PF14927 Neurensin: Neurensin 28.2 83 0.0018 22.3 3.2 29 43-71 39-67 (140)
51 PRK12382 putative transporter; 27.3 1.3E+02 0.0028 22.2 4.3 41 42-82 332-372 (392)
52 TIGR00890 2A0111 Oxalate/Forma 26.7 1E+02 0.0022 21.7 3.4 39 43-81 326-364 (377)
53 TIGR00822 EII-Sor PTS system, 25.4 3.2E+02 0.0069 21.1 7.8 56 15-70 103-159 (265)
54 PRK09757 PTS system N-acetylga 25.2 3.2E+02 0.0069 21.0 7.7 56 15-70 104-160 (267)
55 PRK15065 PTS system mannose-sp 24.3 3.3E+02 0.0073 20.9 7.7 55 14-68 102-157 (262)
56 PF10233 Cg6151-P: Uncharacter 24.2 96 0.0021 21.2 2.8 18 51-68 66-84 (113)
57 PF08019 DUF1705: Domain of un 23.6 2.1E+02 0.0045 19.5 4.5 41 30-70 44-84 (156)
58 TIGR00891 2A0112 putative sial 23.5 1.8E+02 0.0039 20.9 4.3 40 42-81 358-398 (405)
59 PRK09556 uhpT sugar phosphate 23.2 1.2E+02 0.0027 23.3 3.6 39 43-81 380-431 (467)
60 PF07226 DUF1422: Protein of u 23.2 2.3E+02 0.0051 19.7 4.6 32 27-58 44-79 (117)
61 PRK03545 putative arabinose tr 23.2 1.6E+02 0.0034 21.9 4.0 39 43-81 128-166 (390)
62 COG4146 Predicted symporter [G 23.1 2.1E+02 0.0045 24.5 5.1 31 3-33 339-369 (571)
63 PF13828 DUF4190: Domain of un 22.7 1.9E+02 0.0041 17.5 4.1 27 48-74 6-32 (62)
64 PRK10983 putative inner membra 21.0 1.4E+02 0.003 23.5 3.5 22 51-72 226-248 (368)
No 1
>KOG3761|consensus
Probab=99.85 E-value=7.4e-22 Score=158.57 Aligned_cols=68 Identities=49% Similarity=0.746 Sum_probs=65.8
Q ss_pred HhhhhHHHHHHHHHhh---hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhh
Q psy7241 14 LSASSMFARNVYKLIF---RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 14 ls~as~fiDnil~lIl---p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~ 81 (84)
++..+.|+|.+++++| |||.|||||||+||+.-||..|+++|++|++|+|||.+||++|++||||+|-
T Consensus 238 ~~e~~~wid~~lll~~ggipwq~yfqrvlss~sa~~aq~lsfla~~gcilmaip~~ligai~~ntdw~~t~ 308 (591)
T KOG3761|consen 238 FKETSLWIDCFLLLMFGGIPWQAYFQRVLSSKSAHGAQTLSFLAAFGCILMAIPAALIGAIAANTDWNMTA 308 (591)
T ss_pred chhhHHHHHHHHHHHhcCCcHHHHHHHHHhccccchhHHHHHHHHhchHheeCCHHHHhhhhccCcccccc
Confidence 5788999999999999 9999999999999999999999999999999999999999999999999984
No 2
>KOG3761|consensus
Probab=98.14 E-value=1.7e-07 Score=76.26 Aligned_cols=55 Identities=51% Similarity=0.759 Sum_probs=45.4
Q ss_pred CchhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 1 ~~aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
|+||||||+||++||.++||.+|++++.+++.. |+|| +. ++|+|.-+..|+.|+.
T Consensus 350 vsaavmssadssilsaasmfa~ni~kls~r~~a---------sdke--ii--------~vmriai~~~g~~at~ 404 (591)
T KOG3761|consen 350 VSAAVMSSADSSILSAASMFAHNIWKLSFRPHA---------SDKE--II--------IVMRIAIFCFGAMATA 404 (591)
T ss_pred HHHHHHhccchHhhhHHHHHhhhhheeeeccCC---------CCce--EE--------EEEEehhhhhhHHHHH
Confidence 579999999999999999999999999997766 7777 33 6677777777776653
No 3
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.01 E-value=1.2e-05 Score=61.87 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=42.8
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
..|+++||++++||+|++|+..+.+++.+.++.+++.++|..+...
T Consensus 218 ~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~ 263 (407)
T TIGR00813 218 TNQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARAL 263 (407)
T ss_pred cCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999999998753
No 4
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.95 E-value=3.6e-05 Score=60.97 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=42.2
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
.+|.++||++++||+|++++..+++++.+.++.+++.++|+.+...
T Consensus 252 ~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 297 (483)
T PRK09442 252 GLPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAV 297 (483)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566899999999999999999999999999999999999888754
No 5
>PRK10484 putative transporter; Provisional
Probab=97.89 E-value=2.9e-05 Score=62.44 Aligned_cols=46 Identities=28% Similarity=0.244 Sum_probs=42.0
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
..|+++||.+++||+|++|++.+.++++.+++.++++++|..+...
T Consensus 259 ~~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~ 304 (523)
T PRK10484 259 TNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHL 304 (523)
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999988753
No 6
>PRK09395 actP acetate permease; Provisional
Probab=97.64 E-value=9e-05 Score=60.12 Aligned_cols=46 Identities=17% Similarity=0.023 Sum_probs=41.1
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
.+|+++||++++||+|+||+..+++++.+.++.+++.++|..+...
T Consensus 278 ~~p~~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~ 323 (551)
T PRK09395 278 GLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIVL 323 (551)
T ss_pred cccHHHHhhhccCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988888889999999877753
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.57 E-value=0.00014 Score=57.35 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=41.4
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
.+|.++||++++||+|++++..+++++++.++.+++.++|..+...
T Consensus 251 ~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~ 296 (471)
T TIGR02119 251 GLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAV 296 (471)
T ss_pred CchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566799999999999999999999999999999999999888754
No 8
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.47 E-value=0.00015 Score=55.57 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=37.8
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAK 73 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~ 73 (84)
.+|+++||++++||+|++|...+.++..+.++-++++++|..+.
T Consensus 217 ~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~ 260 (406)
T PF00474_consen 217 GAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFYFLTIFIGLIAI 260 (406)
T ss_dssp HH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-
T ss_pred cchHHHHHHHhcCCHHHHHHHHhHHhhhheeeehHHhhhhhhhh
Confidence 77999999999999999999999999888888888788887764
No 9
>PRK12488 acetate permease; Provisional
Probab=97.42 E-value=0.00032 Score=57.12 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=39.8
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
.+|.++||++++||+|+||+..+++.+.+.++-++++++|..+..
T Consensus 276 ~~p~~~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~ 320 (549)
T PRK12488 276 GLPHILMRFFTVSDAREARKSVLYATGFIGYFYLLIIVVGFGAIV 320 (549)
T ss_pred cCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999988877777889999988865
No 10
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.37 E-value=0.00044 Score=55.09 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=38.5
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
.+|.++||++++||+|++++....+++.+.+.-+++.++|..|..
T Consensus 246 ~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 290 (487)
T TIGR02121 246 GQPHIIVRFMAIRSHKELPKARRIGMSWMILSLLGAIAVGLTGIA 290 (487)
T ss_pred cchHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998887777777778888887754
No 11
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.03 E-value=0.00084 Score=54.69 Aligned_cols=45 Identities=18% Similarity=0.027 Sum_probs=40.3
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
.+|.+.||++++||+|+||+...++.+++.++-++++++|..+..
T Consensus 276 g~P~~~~R~~taks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~ 320 (549)
T TIGR02711 276 GLPHILMRFFTVSDAKEARKSVFYATGFMGYFYILTFIIGFGAIL 320 (549)
T ss_pred CCchhheeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999888888999999987764
No 12
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.94 E-value=0.0038 Score=50.72 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=31.8
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHH
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a 72 (84)
.+|.++||++++||+|+||+....+.+...++-+.+..+|..+
T Consensus 254 ~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~ig~~~ 296 (552)
T TIGR03648 254 GLPHVIVRFYTVPKVRDARWSAGWALFFIALLYTTAPAVAAFA 296 (552)
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999998888765544444444555444
No 13
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.54 E-value=0.029 Score=45.03 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=27.4
Q ss_pred hhhhHHHHHhccCCHHH---HHHHHHHHhHHHHHHhHhHHHHHHHHh
Q psy7241 30 RQNVYFQRVLSSKSATQ---AQMLSYVAAFGCLIMAVPPVIIGAIAK 73 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~---A~~~s~~a~~~~~~~aipp~~iG~~a~ 73 (84)
.+|.++||++++||+|+ +++.+....++++ ++++++|..|.
T Consensus 250 ~~p~~~qR~~aak~~~~~~~a~~~~~~~~~~~~---~~~~~ig~~~~ 293 (502)
T PRK15419 250 GQPHILARFMAADSHHSIVHARRISMTWMILCL---AGAVAVGFFGI 293 (502)
T ss_pred CChHHHHhheecCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 57889999999999984 5555544444444 34556666554
No 14
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.12 E-value=0.089 Score=41.56 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=26.0
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhh
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIF 29 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIl 29 (84)
-+|.||++|+.+++-++.+.+++|+..+
T Consensus 328 laA~mST~~s~l~~~ss~~~~Diy~~~~ 355 (471)
T TIGR02119 328 MAAIMSTVNSLLLQSSSTIIKDLYLNYI 355 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999998877
No 15
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=93.71 E-value=0.21 Score=41.32 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=34.2
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHh-ccCCHHHHHHHHHHHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVL-SSKSATQAQMLSYVAAF 56 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvl-Saks~~~A~~~s~~a~~ 56 (84)
||.||.+||.++-.++.+++..| |++. ..|+|+..++.|.++-+
T Consensus 328 aAiMSTIds~L~~~sstliKdLy----------~~~~~~~~~E~ki~~is~~~t~ 372 (473)
T COG4145 328 AAIMSTINSQLLQSSSTLIKDLY----------LNVRDKLKNERKIKRISMIATL 372 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHH
Confidence 68999999999999999876554 5555 56788888888766653
No 16
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.63 E-value=0.19 Score=40.36 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=37.7
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccCC-HHHHHHHHHHHhHHHHHHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKS-ATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSaks-~~~A~~~s~~a~~~~~~~ai 63 (84)
||.||++||.+++.++.+.+++|+..+..+ .+.|. -+.+|+..++-|++.+++++
T Consensus 336 AA~mST~~s~l~a~ss~~~~Diy~~~~~~~------~s~~~~l~~~Ri~~v~~~~~a~~~a~ 391 (502)
T PRK15419 336 AAVMSTLSCQLLVCSSAITEDLYKAFLRKH------ASQKELVWVGRVMVLVVALVAIALAA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998766211 11111 23456666666666555554
No 17
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=93.58 E-value=0.2 Score=40.10 Aligned_cols=56 Identities=30% Similarity=0.433 Sum_probs=38.8
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccC-CHHHHHHHHHHHhHHHHHHhH
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSK-SATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSak-s~~~A~~~s~~a~~~~~~~ai 63 (84)
-||.||++||.+++.++.+.+++|+..++.+. +.| .-+.+|..+++-|++-+++++
T Consensus 328 laA~mST~~s~l~s~ss~~~~Diy~~~~~~~~------s~~~~l~v~R~~~v~~~~~~~~~a~ 384 (487)
T TIGR02121 328 LAAIMSTISSQLLVSSSALTEDFYKAFFKREA------SQKELVMVGRLSVLVIAIIAIILAM 384 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999987662111 111 124566666666666655554
No 18
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.98 E-value=0.24 Score=40.10 Aligned_cols=32 Identities=50% Similarity=0.665 Sum_probs=28.0
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhhhhhh
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIFRQNV 33 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIlp~Q~ 33 (84)
-+|+||++|+.++..++.+++++|+...+-++
T Consensus 335 laAvmSt~ss~ll~~ss~~t~Diyk~~~~~~a 366 (493)
T COG0591 335 LAAVMSTASSQLLVASSAITRDIYKRFLRKNA 366 (493)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence 37899999999999999999999988885443
No 19
>PRK10484 putative transporter; Provisional
Probab=92.09 E-value=0.37 Score=38.92 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=25.3
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhh
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIF 29 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIl 29 (84)
-||.||++||.+++.++.+++++|+..+
T Consensus 337 lAA~mST~~s~l~s~st~~t~Diy~~~~ 364 (523)
T PRK10484 337 FGAILSTFNGFLNSASTLFSLDIYKPII 364 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4789999999999999999999998765
No 20
>KOG2349|consensus
Probab=91.91 E-value=0.19 Score=42.60 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=36.7
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHH
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAI 71 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~ 71 (84)
..|...||.+|.||.|+||..++..+.+-++.-..-.+.|.+
T Consensus 255 vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i 296 (585)
T KOG2349|consen 255 VNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMI 296 (585)
T ss_pred hhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhccccee
Confidence 779999999999999999999999998888876666666655
No 21
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=89.86 E-value=0.96 Score=36.02 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=25.4
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhhh
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIFR 30 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIlp 30 (84)
-||.||++|+.+++.++.+.+++|+.+.|
T Consensus 329 ~aA~mST~~s~l~~~ss~~~~Di~~~~~~ 357 (483)
T PRK09442 329 MAAIMSTVDSQLLQSSSTIIKDLYLNIRP 357 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999988334
No 22
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=89.85 E-value=0.71 Score=37.64 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=37.3
Q ss_pred chhhhchhhhHHHhhhhHHHHHHHHHhh-hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhH
Q psy7241 2 SAAVMSSADSSVLSASSMFARNVYKLIF-RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 2 ~aa~mss~ds~~ls~as~fiDnil~lIl-p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~ai 63 (84)
-+|.||++|+.+++-++++.+++|+..+ |..+ ..+.-+.+|+..++-+++-+++++
T Consensus 376 ~aA~mSt~~s~l~a~st~~~~Di~~~~~~~~~s------~~~~l~~~R~~~v~~~~~~~~~a~ 432 (552)
T TIGR03648 376 LAAALSTAAGLLLVISSAISHDLYYRIINPNAS------EKQRLLVARIALVVAAVIAGYFGL 432 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999998755 2210 011235566666655555444443
No 23
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=88.98 E-value=1.1 Score=34.70 Aligned_cols=28 Identities=50% Similarity=0.656 Sum_probs=25.3
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhh
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFR 30 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp 30 (84)
+|.||.+|+.++.-++.+.+++|+..++
T Consensus 305 aA~mST~~s~l~a~ss~~~~Di~~~~~~ 332 (407)
T TIGR00813 305 AAVMSTLSSQLNSASTVFTMDLYKKIIR 332 (407)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999987663
No 24
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=88.41 E-value=0.22 Score=38.20 Aligned_cols=28 Identities=50% Similarity=0.804 Sum_probs=24.8
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhh
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFR 30 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp 30 (84)
||.||++|+.+++-++.+.+++|+...+
T Consensus 303 aA~~ST~~s~l~a~ss~~~~Di~~~~~~ 330 (406)
T PF00474_consen 303 AAIMSTADSLLLAISSIFSRDIYKPFIK 330 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_pred HhhhHHHHHHHhhhhhhhhHHhhhcccc
Confidence 6889999999999999999999877663
No 25
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=87.74 E-value=1.4 Score=36.17 Aligned_cols=56 Identities=7% Similarity=0.234 Sum_probs=38.1
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccC-CHHHHHHHHHHHhHHHHHHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSK-SATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSak-s~~~A~~~s~~a~~~~~~~ai 63 (84)
||.||++|+.+++.++.+.+++|+..++.++ .+.| .-+.+|+..++-++..+++++
T Consensus 365 AA~mST~~s~l~a~st~i~~Diy~~~~~~~~-----~s~~~~~~v~Ri~~vv~g~ia~~~a~ 421 (549)
T TIGR02711 365 ATILAVVAGLTLAGASAVSHDLYANVIKKGK-----ATERDELRVSKITVLILGVIAIGLGI 421 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999976552111 1111 235666766666666666664
No 26
>PRK09395 actP acetate permease; Provisional
Probab=87.72 E-value=1.2 Score=36.45 Aligned_cols=56 Identities=11% Similarity=0.295 Sum_probs=37.9
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhcc-CCHHHHHHHHHHHhHHHHHHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSS-KSATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSa-ks~~~A~~~s~~a~~~~~~~ai 63 (84)
||.||++|+.+++.++.+.+++|+..+..++ .+. +.-+.+|+.+++-++..+++++
T Consensus 367 AA~mST~ss~lla~st~~~~Diy~~~~~~~~-----~s~~~~l~v~Ri~~v~igi~a~~~a~ 423 (551)
T PRK09395 367 ATILAVVAGLTLAGASAVSHDLYANVIKKGK-----ATERDELRVSKITTLVLGVVAIILGI 423 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999976552110 111 1245666666666666665654
No 27
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=85.42 E-value=3.6 Score=33.44 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHhccCCHHHH----HHHHHHHhHHHHHHhH
Q psy7241 28 IFRQNVYFQRVLSSKSATQA----QMLSYVAAFGCLIMAV 63 (84)
Q Consensus 28 Ilp~Q~~fQRvlSaks~~~A----~~~s~~a~~~~~~~ai 63 (84)
.+.+|+..||.++.|++|+. +..+++..+.|+++++
T Consensus 248 ~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 287 (493)
T COG0591 248 YFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAF 287 (493)
T ss_pred hhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33889999999997766654 4555555555555533
No 28
>PRK12488 acetate permease; Provisional
Probab=84.35 E-value=2.6 Score=34.52 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=37.9
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhh-hhhhHHHHHhccC-CHHHHHHHHHHHhHHHHHHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIF-RQNVYFQRVLSSK-SATQAQMLSYVAAFGCLIMAV 63 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIl-p~Q~~fQRvlSak-s~~~A~~~s~~a~~~~~~~ai 63 (84)
+|.||++|+.+++.++.+.+++|+..+ +.+ .+.| .-+.+|+..++-++..+++++
T Consensus 365 AA~mST~ss~lls~st~is~Diy~~~~~~~~------~s~~~~l~v~Ri~~vvvgv~a~~~a~ 421 (549)
T PRK12488 365 ATILAVVAGLALSGASAVSHDLYACVIRKGQ------ASEAQEMRVSKIATLGIGLLAVVLGL 421 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CChHHhhHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987655 211 1111 134566777766666666665
No 29
>COG4146 Predicted symporter [General function prediction only]
Probab=82.85 E-value=1.4 Score=37.02 Aligned_cols=56 Identities=25% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHhh---hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 20 FARNVYKLIF---RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 20 fiDnil~lIl---p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
|+.-.+-..| .-|...||.|.+||-++-|.+-+++|.+-++-...-++=|+++...
T Consensus 248 fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhl 306 (571)
T COG4146 248 FTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHL 306 (571)
T ss_pred HHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHH
Confidence 4444444444 6799999999999999999999999999888877777778777543
No 30
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=62.00 E-value=12 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHhHhHHHH
Q psy7241 49 MLSYVAAFGCLIMAVPPVII 68 (84)
Q Consensus 49 ~~s~~a~~~~~~~aipp~~i 68 (84)
...+..++.|++.+++|++=
T Consensus 68 ~~al~s~~sf~~g~~iPllp 87 (149)
T cd02431 68 KSALYTGIAYIIGVVIPILP 87 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888653
No 31
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=58.59 E-value=12 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHhHhHHH-HHHHHhhhccc
Q psy7241 51 SYVAAFGCLIMAVPPVI-IGAIAKSTDKV 78 (84)
Q Consensus 51 s~~a~~~~~~~aipp~~-iG~~a~stdw~ 78 (84)
|+++.+.|+..++|+++ ||..--.-.|-
T Consensus 196 ~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~ 224 (230)
T PF03904_consen 196 SFWTYLWYIAYLVPYIFAIGLFIYLYEWI 224 (230)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 58888999999999999 88776666663
No 32
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=57.69 E-value=42 Score=28.98 Aligned_cols=45 Identities=22% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHHHhh--hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhH
Q psy7241 21 ARNVYKLIF--RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPP 65 (84)
Q Consensus 21 iDnil~lIl--p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp 65 (84)
.=|++.+.. --=++|-|||.++|..+=...++++.++|.+.++.=
T Consensus 34 ~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd 80 (580)
T COG4618 34 VINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLD 80 (580)
T ss_pred HHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 335554444 334578999999999999999999999999988754
No 33
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=53.26 E-value=18 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=23.1
Q ss_pred hccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 39 LSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 39 lSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
+|.|+|++ ...+..++.|++.+++|++-=.
T Consensus 53 ls~~~e~~--~~al~~~~s~~~g~lipllp~~ 82 (143)
T cd01059 53 VSVKSQRD--KAALASGLSFILGGLLPLLPYL 82 (143)
T ss_pred HHHhhHHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776 7778888999999998876543
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=52.02 E-value=17 Score=20.58 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=22.1
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
+||++.+|....|. |..+.++=.+++++--+.|.+..+
T Consensus 4 ~~~~~~~~f~~nk~---a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 4 PWKDAWRRFRRNKL---AVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999999986554 444544444444444444555443
No 35
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=43.75 E-value=53 Score=19.17 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhHhHH
Q psy7241 41 SKSATQAQMLSYVAAFGCLIMAVPPV 66 (84)
Q Consensus 41 aks~~~A~~~s~~a~~~~~~~aipp~ 66 (84)
++.++-|...++.|+..-+.+.+|.+
T Consensus 22 ~~~~e~a~~isla~~i~I~~~~~~~i 47 (58)
T PF06686_consen 22 AGEPEYASLISLAGGILIFLLVLPKI 47 (58)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999888764
No 36
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=42.81 E-value=1.4e+02 Score=22.29 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=47.0
Q ss_pred HhhhhHHHHHHHHHhh-hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhH-HHHHH
Q psy7241 14 LSASSMFARNVYKLIF-RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPP-VIIGA 70 (84)
Q Consensus 14 ls~as~fiDnil~lIl-p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp-~~iG~ 70 (84)
++..+.+.||+.+..- .++..-+|-....+.|..++.-+.+.+...+....| +++..
T Consensus 102 v~~lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~ 160 (238)
T PF03609_consen 102 VGILGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAV 160 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888665 788888888999999999999999998888888888 77743
No 37
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=42.57 E-value=48 Score=22.58 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhh
Q psy7241 41 SKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 41 aks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~ 81 (84)
.|+.|.+..++++++++--...+.|++.-..|.+--|-.++
T Consensus 4 ~~~~~~~l~~g~laAv~aS~CCi~Pllll~lGvsgaw~~~l 44 (116)
T PF02411_consen 4 PKTSNGSLLGGVLAAVLASLCCIGPLLLLSLGVSGAWISNL 44 (116)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46777788888888888888889999988888777775443
No 38
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=37.87 E-value=1.5e+02 Score=21.03 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=54.8
Q ss_pred hhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccC--------------CHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 9 ADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSK--------------SATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 9 ~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSak--------------s~~~A~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
+-|-.|.....|.|+.-...+.|=.++-=+...| +++..+...++.-.+++++.+.-+.-|.--..
T Consensus 36 ~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~r~~~Hi~vd~l~~~lp~~~r~~l~~~~~~l~l~f~~~l~~~~~~~~~ 115 (177)
T COG3090 36 FTRYVFNSPISWSEELARLLFVWLIFLGAAYGVREGGHIGVDVLVNLLPPRARKILRIIADLLILVFFLLLIWGGWKLAA 115 (177)
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHhccCCeeeehHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888777776666665555555 78888999999999999999987777777778
Q ss_pred hccchh
Q psy7241 75 TDKVRS 80 (84)
Q Consensus 75 tdw~~t 80 (84)
.+||++
T Consensus 116 ~~~~~~ 121 (177)
T COG3090 116 INWSQG 121 (177)
T ss_pred HHHhcc
Confidence 888765
No 39
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=36.67 E-value=54 Score=28.02 Aligned_cols=58 Identities=16% Similarity=0.359 Sum_probs=41.9
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPP 65 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp 65 (84)
|+.+|.+|-.+|.-++-+.+++|.+++.... -..|--+.+|+.+.+.+++-.++++-|
T Consensus 354 AtaLstaaGL~l~iasavsHDiY~~vik~~a-----se~~~v~vaRi~~v~~~vva~~lgi~~ 411 (529)
T COG4147 354 ATALSTAAGLLLVIASAVSHDLYAMVIKKGA-----TEKKEVRVARIAVVILGVVAILLGILP 411 (529)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHhCCCC-----CccceehhHHHHHHHHHHHHHHheecC
Confidence 5789999999999999999999999882211 001123567788777777777777654
No 40
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=33.63 E-value=1.7e+02 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHhHh-HHHHHHHHhhh
Q psy7241 49 MLSYVAAFGCLIMAVP-PVIIGAIAKST 75 (84)
Q Consensus 49 ~~s~~a~~~~~~~aip-p~~iG~~a~st 75 (84)
..+.+.+.++.++++| |+++|..+.-.
T Consensus 218 i~g~~~~i~~~~~gvp~a~~~~~l~~~~ 245 (341)
T TIGR02872 218 ITFVIVLIGLLIIGVDYALTLALIIGIV 245 (341)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4456677888899998 67888776544
No 41
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=32.78 E-value=81 Score=21.52 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=29.4
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~ 81 (84)
||++..|+++.+=+-..|+... +.++.-+-+.++.-..||..++
T Consensus 37 p~~~~lq~I~~sltGp~A~~iA--------Vi~Ii~~Gi~~~fG~~~~~r~~ 80 (108)
T COG3838 37 PWETPLQQILQSLTGPVAKTIA--------VIGIIAIGIMLIFGRLDWRRAL 80 (108)
T ss_pred cHHHHHHHHHHHhhchHHHHHH--------HHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999998888888773 3333333444444456665543
No 42
>PRK03545 putative arabinose transporter; Provisional
Probab=30.86 E-value=79 Score=23.46 Aligned_cols=50 Identities=2% Similarity=-0.068 Sum_probs=37.4
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhhc
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSLA 82 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~~ 82 (84)
..|.+-|+.. .++.++..++..++.++-.++-|++.|.+....+++.+..
T Consensus 314 ~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~ 363 (390)
T PRK03545 314 AMQVKVLKLA---PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGY 363 (390)
T ss_pred HHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence 3455555542 2455778888889999999999999999998888876653
No 43
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=30.74 E-value=70 Score=21.87 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=26.0
Q ss_pred hccCCHHHHHHHHHHHhHHHHHHhHhHHHHH
Q psy7241 39 LSSKSATQAQMLSYVAAFGCLIMAVPPVIIG 69 (84)
Q Consensus 39 lSaks~~~A~~~s~~a~~~~~~~aipp~~iG 69 (84)
..+++++.|+.-....|+.|+..++-=++++
T Consensus 63 ~aa~~~~~Ar~~~~~~g~~y~~l~i~Gl~~~ 93 (125)
T PF14325_consen 63 AAARSPRAARAFLRLFGVVYLALGIYGLFPG 93 (125)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567899999999999999999888766655
No 44
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=29.49 E-value=68 Score=26.44 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh-ccchh
Q psy7241 41 SKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST-DKVRS 80 (84)
Q Consensus 41 aks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st-dw~~t 80 (84)
...++.|+...+.=+++|++-++-|.+.|.+=..+ .|+..
T Consensus 326 ~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~ 366 (395)
T COG2807 326 SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAP 366 (395)
T ss_pred CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHH
Confidence 33456677888889999999999999999875544 45543
No 45
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=29.47 E-value=71 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchh
Q psy7241 43 SATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRS 80 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t 80 (84)
|++++..+ +.+++.|+++.+..--+|.+.-
T Consensus 79 TPktsllg--------~~~~v~P~i~~~~~~KtdRD~~ 108 (125)
T PF07225_consen 79 TPKTSLLG--------LGFGVVPLIFYYYVLKTDRDRK 108 (125)
T ss_pred CchHHHHH--------HHHHHHHHHHHHhhhccchhHH
Confidence 66665554 6678889999999888887653
No 46
>PF05230 MASE2: MASE2 domain; InterPro: IPR007894 This domain of unknown function is often found adjacent to the GGDEF domain in bacteria (IPR000160 from INTERPRO).
Probab=29.11 E-value=1e+02 Score=20.09 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.5
Q ss_pred hhHHHHHhccCCHHHHHHH-----HHHHhHHHHHHhHhHHH
Q psy7241 32 NVYFQRVLSSKSATQAQML-----SYVAAFGCLIMAVPPVI 67 (84)
Q Consensus 32 Q~~fQRvlSaks~~~A~~~-----s~~a~~~~~~~aipp~~ 67 (84)
.--||+..-++++.+++.. |+.||+-.-+|+++|+-
T Consensus 44 hlAy~~a~rs~~p~~~E~~nLl~Da~~~G~wia~m~fn~lP 84 (91)
T PF05230_consen 44 HLAYQLARRSRDPYRAEQRNLLIDAAFGGFWIALMGFNPLP 84 (91)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 3446666668888888765 67899999999987764
No 47
>KOG2349|consensus
Probab=28.95 E-value=63 Score=27.82 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHH
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a 72 (84)
+|.||+..|.+=|-+..+...++++..+ .-||+++.+. .-..-+++++..+..+.+.
T Consensus 343 sA~LSsLSS~~NS~s~v~~eD~ik~~~k----------~~se~~~~~~---~r~~vvv~G~~si~~~fvv 399 (585)
T KOG2349|consen 343 SAALSSLSSIFNSLSTVFLEDYIKPLRK----------PLSERELNIA---MRLFVVVLGLISIGLAFVV 399 (585)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhcC----------CcChHHHhhh---hheeeeeehhHHHHHHHHH
Confidence 5789999999999999999999998886 2277776543 3333344444444444433
No 48
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=28.75 E-value=94 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchh
Q psy7241 42 KSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRS 80 (84)
Q Consensus 42 ks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t 80 (84)
.+++.++..++......+-..+.|.+.|.+.....|+.+
T Consensus 340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 345667788888888888888999999999998888654
No 49
>KOG4085|consensus
Probab=28.55 E-value=1.8e+02 Score=21.43 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHhhhhHHHHHHHHHhh--h---hhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 13 VLSASSMFARNVYKLIF--R---QNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 13 ~ls~as~fiDnil~lIl--p---~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
+-.-.++.+..++.+.+ | |=.=|--...-|+|+ .-.+-=+.+|.-|++||+++-.
T Consensus 59 ~vAgvlqm~agfivlllEAPfCCqFv~F~n~iAekves---~~lw~kA~~Y~aMavvPI~lc~ 118 (175)
T KOG4085|consen 59 IVAGVLQMMAGFIVLLLEAPFCCQFVEFANTIAEKVES---LRLWQKAVFYCAMAVVPIVLCL 118 (175)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccccchhhh
Confidence 33344555666666665 4 222233333444444 4456678899999999999865
No 50
>PF14927 Neurensin: Neurensin
Probab=28.17 E-value=83 Score=22.29 Aligned_cols=29 Identities=7% Similarity=0.294 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhHHHHHHhHhHHHHHHH
Q psy7241 43 SATQAQMLSYVAAFGCLIMAVPPVIIGAI 71 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~~aipp~~iG~~ 71 (84)
++..--..+++-|+++++.|+.-+.+|+.
T Consensus 39 w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 39 WSSVCWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333345899999999999999999985
No 51
>PRK12382 putative transporter; Provisional
Probab=27.31 E-value=1.3e+02 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhhc
Q psy7241 42 KSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSLA 82 (84)
Q Consensus 42 ks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~~ 82 (84)
..++.++..++......+-.++-|.+.|.+.....|+..+.
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~ 372 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFL 372 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 34566778888888888888889999999999888876654
No 52
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=26.71 E-value=1e+02 Score=21.74 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhh
Q psy7241 43 SATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~ 81 (84)
.++.++..++......+-..+-|.+.|.+.....|+..+
T Consensus 326 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 364 (377)
T TIGR00890 326 PANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTF 364 (377)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH
Confidence 345567778888888888899999999998888887654
No 53
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=25.35 E-value=3.2e+02 Score=21.07 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHhh-hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 15 SASSMFARNVYKLIF-RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 15 s~as~fiDnil~lIl-p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
...+..++++...+- .|+..-.|.-...+.|..++.-+.+.+...+.-.+|.+++.
T Consensus 103 a~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~ 159 (265)
T TIGR00822 103 AAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVA 159 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667777766555 88888889999999999988888888877766666667763
No 54
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=25.22 E-value=3.2e+02 Score=21.01 Aligned_cols=56 Identities=5% Similarity=-0.052 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHhh-hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 15 SASSMFARNVYKLIF-RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 15 s~as~fiDnil~lIl-p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
+..+...+++...+. .|+....|.-...+.|.-++.-+++...+.+.-.+|.+++.
T Consensus 104 gllg~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~~~~~~~~~~~~~~fl~~ 160 (267)
T PRK09757 104 SLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCT 160 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667777776666 88888889999999999988888888877776666667763
No 55
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=24.30 E-value=3.3e+02 Score=20.93 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=41.3
Q ss_pred HhhhhHHHHHHHHHhh-hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHH
Q psy7241 14 LSASSMFARNVYKLIF-RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVII 68 (84)
Q Consensus 14 ls~as~fiDnil~lIl-p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~i 68 (84)
+...+.+.+++...+- .|+...+|.....+.|.-++..+.+...+.+.-.+|+++
T Consensus 102 vglLg~~l~~~~~~~n~~~~h~adk~ae~g~~k~i~~~~~~~~~~~~~~~~~~~f~ 157 (262)
T PRK15065 102 LAAAGQVLTIIVRTITVAFQHAADKAAEEGNFRAIEWLHVSALLLQALRIAIPAAL 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788776655 888888999999999999988898888766654444444
No 56
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=24.17 E-value=96 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHhHhH-HHH
Q psy7241 51 SYVAAFGCLIMAVPP-VII 68 (84)
Q Consensus 51 s~~a~~~~~~~aipp-~~i 68 (84)
-+-=|.+|.+|+++| +.+
T Consensus 66 n~~Ra~~Y~~maiv~~isl 84 (113)
T PF10233_consen 66 NWMRAALYCVMAIVPWISL 84 (113)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 444567899999999 444
No 57
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=23.65 E-value=2.1e+02 Score=19.54 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.6
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
.-++..|=|+.....|.....+.--..-.+++++.|.++-.
T Consensus 44 id~~mi~nv~eTn~~Ea~ells~~~~~~~l~~~vlP~~~l~ 84 (156)
T PF08019_consen 44 IDYDMIQNVFETNTAEASELLSWKLILWLLLLGVLPALLLW 84 (156)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888788877777777778888876644
No 58
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=23.50 E-value=1.8e+02 Score=20.89 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhc-cchhh
Q psy7241 42 KSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD-KVRSL 81 (84)
Q Consensus 42 ks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~std-w~~t~ 81 (84)
..++.++..++.-.+..+...+-|.+.|.+..... |+..+
T Consensus 358 ~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 358 PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 45566778888888888889999999999998877 65443
No 59
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=23.22 E-value=1.2e+02 Score=23.33 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHhHHHH-HHhHhHHHHHHHHh------------hhccchhh
Q psy7241 43 SATQAQMLSYVAAFGCL-IMAVPPVIIGAIAK------------STDKVRSL 81 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~-~~aipp~~iG~~a~------------stdw~~t~ 81 (84)
.+..+...++...++++ -.++-|.++|++.. .++|+..+
T Consensus 380 ~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f 431 (467)
T PRK09556 380 KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTF 431 (467)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHH
Confidence 44567788888888887 44788999999988 67887765
No 60
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.21 E-value=2.3e+02 Score=19.68 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=18.5
Q ss_pred HhhhhhhHHHHHhccC----CHHHHHHHHHHHhHHH
Q psy7241 27 LIFRQNVYFQRVLSSK----SATQAQMLSYVAAFGC 58 (84)
Q Consensus 27 lIlp~Q~~fQRvlSak----s~~~A~~~s~~a~~~~ 58 (84)
+++.-|.+|||-+.-. .++.|-..=++|.++|
T Consensus 44 LvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~y 79 (117)
T PF07226_consen 44 LVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGY 79 (117)
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 3446677777776654 5555544444555555
No 61
>PRK03545 putative arabinose transporter; Provisional
Probab=23.20 E-value=1.6e+02 Score=21.85 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccchhh
Q psy7241 43 SATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~~t~ 81 (84)
.+|.++..++.....-+-..+.|.+.|.+.....|+.++
T Consensus 128 ~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 128 AGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 456778888888888788888888888888888887654
No 62
>COG4146 Predicted symporter [General function prediction only]
Probab=23.10 E-value=2.1e+02 Score=24.47 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=26.2
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhh
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNV 33 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~ 33 (84)
||..|+..+.+=|.+-.|.-.+|..|+-+|.
T Consensus 339 GAilStFN~fLNSa~Tlf~~diy~~I~k~na 369 (571)
T COG4146 339 GAILSTFNGFLNSASTLFSMDIYRRIIKQNA 369 (571)
T ss_pred HHHHHHHHHHhhhhhHHhhhhhhhHhhcCCC
Confidence 6788889998889999999999999995543
No 63
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=22.69 E-value=1.9e+02 Score=17.49 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=19.4
Q ss_pred HHHHHHHhHHHHHHhHhHHHHHHHHhh
Q psy7241 48 QMLSYVAAFGCLIMAVPPVIIGAIAKS 74 (84)
Q Consensus 48 ~~~s~~a~~~~~~~aipp~~iG~~a~s 74 (84)
-..++++=+.+++.+++.+..|.+|..
T Consensus 6 lvlgi~~~~~~~~~~i~aiilG~ial~ 32 (62)
T PF13828_consen 6 LVLGILGLFLCGLLGIVAIILGHIALR 32 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555557899999999998864
No 64
>PRK10983 putative inner membrane protein; Provisional
Probab=20.95 E-value=1.4e+02 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHhHh-HHHHHHHH
Q psy7241 51 SYVAAFGCLIMAVP-PVIIGAIA 72 (84)
Q Consensus 51 s~~a~~~~~~~aip-p~~iG~~a 72 (84)
+.++++++.++++| |+++|.+.
T Consensus 226 gvl~~ig~~i~gvp~a~llg~l~ 248 (368)
T PRK10983 226 AVLGGIGLAISGVPYATLLTVLM 248 (368)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44688889999998 78887653
Done!