Query psy7241
Match_columns 84
No_of_seqs 112 out of 209
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:42:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 98.0 6.7E-06 2.3E-10 64.8 5.2 46 30-75 237-282 (530)
2 2xq2_A Sodium/glucose cotransp 97.6 3E-05 1E-09 61.8 3.8 46 30-75 266-311 (593)
3 2xq2_A Sodium/glucose cotransp 91.3 0.31 1.1E-05 38.7 5.3 51 3-62 360-414 (593)
4 3dh4_A Sodium/glucose cotransp 90.3 0.086 2.9E-06 41.3 1.2 54 3-62 331-385 (530)
5 1ais_B TFB TFIIB, protein (tra 30.0 39 0.0013 22.4 2.8 56 6-61 2-63 (200)
6 2xi5_A RNA polymerase L, L-pro 20.3 57 0.0019 23.3 2.2 20 31-50 7-26 (184)
7 1yhu_D Hemoglobin B2 chain; gl 19.1 1.8E+02 0.0063 18.2 5.9 59 3-61 1-79 (149)
8 2d2p_A Pituitary adenylate cyc 19.0 69 0.0024 17.3 1.9 26 18-43 4-31 (39)
9 1pw4_A Glycerol-3-phosphate tr 16.2 1.6E+02 0.0056 20.3 3.8 39 43-81 377-416 (451)
10 1t5q_A Gastric inhibitory poly 15.9 1.2E+02 0.0042 15.4 2.3 13 30-42 18-30 (30)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.00 E-value=6.7e-06 Score=64.79 Aligned_cols=46 Identities=33% Similarity=0.248 Sum_probs=42.5
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
..|.++||++++||+|+||++.++++++++++.++++++|.++...
T Consensus 237 ~~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 282 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVI 282 (530)
T ss_dssp TTCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999988654
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.65 E-value=3e-05 Score=61.80 Aligned_cols=46 Identities=33% Similarity=0.272 Sum_probs=42.2
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKST 75 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~st 75 (84)
..|.++||++++||+|+||++.+++++.++++.++.+++|.++...
T Consensus 266 ~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 311 (593)
T 2xq2_A 266 FNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVI 311 (593)
T ss_dssp TTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred CChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999999999999999999999999999999988755
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=91.27 E-value=0.31 Score=38.66 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=35.8
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccCCHHH----HHHHHHHHhHHHHHHh
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQ----AQMLSYVAAFGCLIMA 62 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSaks~~~----A~~~s~~a~~~~~~~a 62 (84)
+|.||++||.+++-++++.+++|+..+..+ .|||+ .|...++-+++.++++
T Consensus 360 aA~mST~~s~l~a~st~~~~Diy~~~~~~~---------~s~~~~l~v~Ri~~v~~~~ia~~~a 414 (593)
T 2xq2_A 360 AAIVSSLASMLNSTATIFTMDIYKEYISPD---------SGDHKLVNVGRTAAVVALIIAALIA 414 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTCSC---------CCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998765221 24554 4555555555544444
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=90.26 E-value=0.086 Score=41.35 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.5
Q ss_pred hhhhchhhhHHHhhhhHHHHHHHHHhhhhhhHHHHHhccC-CHHHHHHHHHHHhHHHHHHh
Q psy7241 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSK-SATQAQMLSYVAAFGCLIMA 62 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fiDnil~lIlp~Q~~fQRvlSak-s~~~A~~~s~~a~~~~~~~a 62 (84)
||.||++||.+++.++.+.+++|+..+..+ .+.| --+.+|...++-+++.++++
T Consensus 331 AA~mST~ss~l~s~st~~~~Diy~~~~~~~------~s~~~~~~v~R~~~v~~~i~a~~~a 385 (530)
T 3dh4_A 331 AAIVSSLASMLNSTATIFTMDIYKEYISPD------SGDHKLVNVGRTAAVVALIIACLIA 385 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCSC------SCSSHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999987655111 1111 11334555555555555544
No 5
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=29.95 E-value=39 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=29.5
Q ss_pred hchhhhHHHhhhhHHHHHHHHHhh------hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHH
Q psy7241 6 MSSADSSVLSASSMFARNVYKLIF------RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIM 61 (84)
Q Consensus 6 mss~ds~~ls~as~fiDnil~lIl------p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~ 61 (84)
+++-|+.+-......-+---.+-+ .-+.+|+|+...+.-+.-..-++.++.+|+..
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAc 63 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAAC 63 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH
Confidence 455666664333333222233333 56788999998876554445667777777654
No 6
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=20.30 E-value=57 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=17.2
Q ss_pred hhhHHHHHhccCCHHHHHHH
Q psy7241 31 QNVYFQRVLSSKSATQAQML 50 (84)
Q Consensus 31 ~Q~~fQRvlSaks~~~A~~~ 50 (84)
.|.|-.|+.+||++++|+=.
T Consensus 7 ~~q~~~RI~~~~~~~~AKDI 26 (184)
T 2xi5_A 7 YQQFLARINTARDACVAKDI 26 (184)
T ss_dssp HHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHccCChhHHHhH
Confidence 47788999999999999854
No 7
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=19.14 E-value=1.8e+02 Score=18.23 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=36.5
Q ss_pred hhhhchhhhHHHhhhhHHH-------------HHHHHHhh----hhhhHHHHHh--ccCCHH-HHHHHHHHHhHHHHHH
Q psy7241 3 AAVMSSADSSVLSASSMFA-------------RNVYKLIF----RQNVYFQRVL--SSKSAT-QAQMLSYVAAFGCLIM 61 (84)
Q Consensus 3 aa~mss~ds~~ls~as~fi-------------Dnil~lIl----p~Q~~fQRvl--Saks~~-~A~~~s~~a~~~~~~~ 61 (84)
||-||.-|..++..+|--+ ..+|..+| -.|.||.+.- +..|++ .++...+++++.-.+-
T Consensus 1 ~~~~s~~~~~~v~~sw~~v~~~~~~~~~~~~g~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~ 79 (149)
T 1yhu_D 1 AASCTTEDRREMQLMWGNVWSAQFTGRRIAIAQAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIG 79 (149)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777766554 56777777 5688998853 334554 4455555666555543
No 8
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=18.98 E-value=69 Score=17.26 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhh--hhhhHHHHHhccCC
Q psy7241 18 SMFARNVYKLIF--RQNVYFQRVLSSKS 43 (84)
Q Consensus 18 s~fiDnil~lIl--p~Q~~fQRvlSaks 43 (84)
|+|++++-+..- ..|+|.|.+|+.+.
T Consensus 4 g~FTs~yskyl~~~~ak~fl~~l~~kr~ 31 (39)
T 2d2p_A 4 GIFTDSYSRYRKQMAVKKYLAAVLGKRY 31 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 456665544433 88999999986554
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.18 E-value=1.6e+02 Score=20.30 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhHHHH-HHhHhHHHHHHHHhhhccchhh
Q psy7241 43 SATQAQMLSYVAAFGCL-IMAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~-~~aipp~~iG~~a~stdw~~t~ 81 (84)
.++.++..++...+..+ -..+-|.+.|.+....+|+..+
T Consensus 377 ~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 377 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 44677888888888888 8888999999988877776554
No 10
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=15.88 E-value=1.2e+02 Score=15.42 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=9.8
Q ss_pred hhhhHHHHHhccC
Q psy7241 30 RQNVYFQRVLSSK 42 (84)
Q Consensus 30 p~Q~~fQRvlSak 42 (84)
..|+|.|..++.|
T Consensus 18 ~ak~fv~wLl~~k 30 (30)
T 1t5q_A 18 HQQDFVNWLLAQK 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 6788888887654
Done!