Query psy7241
Match_columns 84
No_of_seqs 112 out of 209
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 21:42:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7241.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7241hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gg1 f.58.1.1 (G:7-296) Mal 21.7 66 0.0048 20.6 4.5 37 42-78 1-37 (290)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 16.0 73 0.0053 20.1 3.6 39 43-81 374-413 (447)
3 d1u9pa1 a.43.1.1 (A:72-107) Ar 15.3 23 0.0017 17.6 0.7 11 31-41 19-29 (36)
4 d1ijda_ f.3.1.1 (A:) Light-har 12.2 49 0.0036 17.4 1.5 10 64-73 16-25 (46)
5 d1rh5b_ f.23.28.1 (B:) Preprot 11.9 1.2E+02 0.0084 16.2 4.1 28 43-70 19-46 (56)
6 d1bhda_ a.40.1.1 (A:) Utrophin 10.3 22 0.0016 20.7 -0.5 11 74-84 30-40 (108)
7 d1vola1 a.74.1.2 (A:113-207) T 10.2 41 0.003 18.5 0.8 33 30-62 25-57 (95)
8 d1p7ba2 f.14.1.1 (A:36-151) In 10.1 1.5E+02 0.011 16.5 3.8 20 30-49 12-31 (116)
9 d1nkza_ f.3.1.1 (A:) Light-har 9.7 66 0.0048 17.3 1.5 10 64-73 16-25 (53)
10 d1bkra_ a.40.1.1 (A:) beta-spe 9.3 25 0.0018 20.4 -0.5 11 74-84 27-37 (108)
No 1
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=21.73 E-value=66 Score=20.58 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHhHHHHHHhHhHHHHHHHHhhhccc
Q psy7241 42 KSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKV 78 (84)
Q Consensus 42 ks~~~A~~~s~~a~~~~~~~aipp~~iG~~a~stdw~ 78 (84)
||.|......++--++..++-+.|++.-...+-.+||
T Consensus 1 k~~k~r~~i~~~~l~~~~~~~~~Pl~~~i~~Sf~~~~ 37 (290)
T d2r6gg1 1 KSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGN 37 (290)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBSSC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 6677777777777777778888898888877766654
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.01 E-value=73 Score=20.12 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhHHHHH-HhHhHHHHHHHHhhhccchhh
Q psy7241 43 SATQAQMLSYVAAFGCLI-MAVPPVIIGAIAKSTDKVRSL 81 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~-~aipp~~iG~~a~stdw~~t~ 81 (84)
.+..+...++...+.++. .-+.|++.|.+.....|+...
T Consensus 374 ~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 413 (447)
T d1pw4a_ 374 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 413 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 344566777776666664 345789999999988887654
No 3
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=15.27 E-value=23 Score=17.65 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=8.3
Q ss_pred hhhHHHHHhcc
Q psy7241 31 QNVYFQRVLSS 41 (84)
Q Consensus 31 ~Q~~fQRvlSa 41 (84)
--++||||+.+
T Consensus 19 ns~iy~~vmes 29 (36)
T d1u9pa1 19 NSEIYQRVMES 29 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 35789999865
No 4
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=12.23 E-value=49 Score=17.36 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=7.0
Q ss_pred hHHHHHHHHh
Q psy7241 64 PPVIIGAIAK 73 (84)
Q Consensus 64 pp~~iG~~a~ 73 (84)
.|+++|.++.
T Consensus 16 ~Pl~LgsVav 25 (46)
T d1ijda_ 16 LPLMLGAVAI 25 (46)
T ss_dssp HHHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 3778887764
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.94 E-value=1.2e+02 Score=16.24 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHhHHHHHHhHhHHHHHH
Q psy7241 43 SATQAQMLSYVAAFGCLIMAVPPVIIGA 70 (84)
Q Consensus 43 s~~~A~~~s~~a~~~~~~~aipp~~iG~ 70 (84)
|.+|=+..+.+.|++.+++|+.=.+|=+
T Consensus 19 ~~~Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 19 TKDEYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777766555443
No 6
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.27 E-value=22 Score=20.69 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=7.8
Q ss_pred hhccchhhccC
Q psy7241 74 STDKVRSLAFC 84 (84)
Q Consensus 74 stdw~~t~~~~ 84 (84)
++||+.-.+||
T Consensus 30 s~sw~DG~a~c 40 (108)
T d1bhda_ 30 TTSWTDGLAFN 40 (108)
T ss_dssp SGGGTTSHHHH
T ss_pred ccccccchHHH
Confidence 45777777776
No 7
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=41 Score=18.48 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=22.3
Q ss_pred hhhhHHHHHhccCCHHHHHHHHHHHhHHHHHHh
Q psy7241 30 RQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMA 62 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~~s~~a~~~~~~~a 62 (84)
.-+.+|+++...+-.+.-..-+++||.+|+...
T Consensus 25 ~A~~i~~~~~~~~~~~Gr~~~~i~AA~iY~acr 57 (95)
T d1vola1 25 RTNNLFRQAYEQKSLKGRANDAIASACLYIACR 57 (95)
T ss_dssp HHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH
Confidence 446777777766654444466788888888654
No 8
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=10.09 E-value=1.5e+02 Score=16.46 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=13.8
Q ss_pred hhhhHHHHHhccCCHHHHHH
Q psy7241 30 RQNVYFQRVLSSKSATQAQM 49 (84)
Q Consensus 30 p~Q~~fQRvlSaks~~~A~~ 49 (84)
.++|.|.+.+..+-.+--..
T Consensus 12 ~~rd~~~~ll~~~~~~~l~~ 31 (116)
T d1p7ba2 12 VWRDLYYWALKVSWPVFFAS 31 (116)
T ss_dssp HHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 57889999887765554333
No 9
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.72 E-value=66 Score=17.27 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=6.9
Q ss_pred hHHHHHHHHh
Q psy7241 64 PPVIIGAIAK 73 (84)
Q Consensus 64 pp~~iG~~a~ 73 (84)
.|+++|.++.
T Consensus 16 ~Pl~LgsVav 25 (53)
T d1nkza_ 16 IPALLGSVTV 25 (53)
T ss_dssp HHHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 3678887764
No 10
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.28 E-value=25 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=7.8
Q ss_pred hhccchhhccC
Q psy7241 74 STDKVRSLAFC 84 (84)
Q Consensus 74 stdw~~t~~~~ 84 (84)
++||+.-.+||
T Consensus 27 s~sw~DG~af~ 37 (108)
T d1bkra_ 27 TTSWRDGMAFN 37 (108)
T ss_dssp SGGGTTSHHHH
T ss_pred CCcccCcHHHH
Confidence 46777777776
Done!