RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7241
(84 letters)
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 66.8 bits (164), Expect = 9e-15
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 31 QNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTD 76
Q FQRVLS+KS AQ LS +A FG L+ A+PP++IG A S D
Sbjct: 238 QQDVFQRVLSAKSEKTAQRLSLLAGFGYLLFAIPPLLIGLAAASID 283
Score = 49.1 bits (118), Expect = 2e-08
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 2 SAAVMSSADSSVLSASSMFARNVYKLIFRQ 31
+A+MS+ADS++L+ SS+F+ N+YK +
Sbjct: 320 LSAIMSTADSALLAPSSVFSENIYKPFRPK 349
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 37.1 bits (87), Expect = 3e-04
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVY-FQRVLSSKSATQAQMLSYVAAFGCLIM 61
AA+MS+ADS +L SS ++YK R+ + V S+ A +A +I
Sbjct: 326 AAIMSTADSQLLVCSSALTEDLYKAFLRKEASDKELVWVSRLAVLV-----IALIALIIA 380
Query: 62 AVPPVIIGAI 71
PP + +
Sbjct: 381 LNPPSSVFDL 390
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AAVMS+A S +L ASS R++YK R+N
Sbjct: 336 AAVMSTASSQLLVASSAITRDIYKRFLRKN 365
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 34 YFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS 74
QR L++K A+ +A L++ +IG A++
Sbjct: 244 IVQRFLAAKDEKTARRGLLLAGLLILLIGFLAALIGLAARA 284
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNV 33
AA+MS+ADS +L+AS++F R++YK +
Sbjct: 319 AAIMSTADSLLLAASTLFTRDIYKRLINPKA 349
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 34.6 bits (80), Expect = 0.002
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLI 60
+ AAVMS+ S + SAS++F ++YK I R N ++ + + + A +
Sbjct: 303 ILAAVMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRI---AVLVAAVIAGFV 359
Query: 61 MAVPPVII 68
A +
Sbjct: 360 AAAQGGQV 367
Score = 24.6 bits (54), Expect = 8.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 24 VYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72
V + V QR L++KSA A+ ++ L+ V+ G IA
Sbjct: 212 VALWYWTNQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIA 260
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 33.5 bits (77), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
M AA+MS+ S +LS+SS F ++YK I R+
Sbjct: 301 MLAAIMSTLTSQLLSSSSAFTHDLYKNIRRKA 332
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia
coli YidK-like; solute binding domain. Uncharacterized
subfamily of the solute binding domain of the solute
carrier 5 (SLC5) transporter family (also called the
sodium/glucose cotransporter family or solute sodium
symporter family) that co-transports Na+ with sugars,
amino acids, inorganic ions or vitamins. One member of
the SLC5 family, human SGLT3, has been characterized as
a glucose sensor and not a transporter. This subfamily
includes the uncharacterized Escherichia coli YidK
protein, and belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 472
Score = 31.4 bits (72), Expect = 0.028
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLI 60
+ A++SS +S++ SA+++F+ ++YK I N ++++ ++ V +
Sbjct: 330 LFGAILSSFNSALNSAATLFSLDIYKPIINPNATDKQLVKV-----GKIFGIV--LAIIS 382
Query: 61 MAVPPVIIGA 70
M + P+I A
Sbjct: 383 MIIAPLIANA 392
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 30.8 bits (70), Expect = 0.046
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AA+MS+ S +L +SS + YK F++
Sbjct: 329 AAIMSTISSQLLVSSSALTEDFYKAFFKRE 358
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional.
Length = 523
Score = 31.0 bits (71), Expect = 0.047
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 4 AVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAV 63
A++S+ + + SAS++F+ ++YK I N A++ Q++ FG ++A+
Sbjct: 339 AILSTFNGFLNSASTLFSLDIYKPIINPN-----------ASEKQLVKVGKKFG-FVLAI 386
Query: 64 PPVII 68
+I+
Sbjct: 387 ISMIV 391
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 30.5 bits (69), Expect = 0.067
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQ 31
M AA+MS DS SAS++F +VYK I ++
Sbjct: 356 MLAALMSDLDSIFNSASTIFTIDVYKRIRKK 386
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 29.2 bits (66), Expect = 0.17
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQ 31
M AA+MSS S S+S++F +++K I +
Sbjct: 357 MLAALMSSLTSIFNSSSTLFTMDIWKRIRPR 387
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 454
Score = 28.3 bits (64), Expect = 0.34
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AA+MS+A ++L++S++ +VY +N
Sbjct: 313 AAMMSTASGALLASSTVLTNDVYPRFRAKN 342
Score = 24.5 bits (54), Expect = 7.7
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 36 QRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAK 73
QRV +++S A+ A C++ + +IG A+
Sbjct: 241 QRVFTARSEKVARWGGVAAGLYCVLYGLAGALIGMAAR 278
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 28.2 bits (63), Expect = 0.42
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 4 AVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAV 63
A++S+ + + SAS++F+ ++Y+ I +QN A + ++++ FG +A+
Sbjct: 340 AILSTFNGFLNSASTLFSMDIYRRIIKQN-----------AEEQELVTVGRKFG-AFIAI 387
Query: 64 PPVIIG 69
V+I
Sbjct: 388 VSVLIA 393
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 27.3 bits (61), Expect = 0.94
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
A +S+A +L +S + ++Y ++ ++
Sbjct: 354 ATALSTAAGLLLVIASAVSHDLYAMVIKKG 383
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 26.8 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQ 31
AA+MS+ DS ++ ASS +++Y +
Sbjct: 327 AAIMSTVDSQLILASSAIVKDLYLNYKNK 355
>gnl|CDD|237154 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 26.4 bits (59), Expect = 2.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 34 YFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72
Y +R S ++A QA + V G L M V +I+G A
Sbjct: 149 YAERAASRRAALQALL---VTTAGGLAMLVGIIILGQAA 184
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 26.2 bits (58), Expect = 2.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 17 SSMFARNVYKLIFRQNVYFQRVLSS 41
SSM AR V +FR N V SS
Sbjct: 142 SSMLARLVNIYMFRCNNKMLFVTSS 166
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose
cotransporter (vSGLT) and related proteins; solute
binding domain. vSGLT transports D-galactose,
D-glucose, and alpha-D-fucose, with a sugar specificity
in the order of D-galactose >D-fucose >D-glucose. It
transports one Na+ ion for each sugar molecule, and
appears to function as a monomer. vSGLT has 13
transmembrane helices (TMs): TM-1, an inverted topology
repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered
to conform to the solute carrier 6 family Aquifex
aeolicus LeuT). This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 523
Score = 25.7 bits (57), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 36 QRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72
QR L +KS ++AQ AAF L++ VI G A
Sbjct: 261 QRALGAKSLSEAQKGLVFAAFLKLLIPFIVVIPGIAA 297
Score = 24.1 bits (53), Expect = 10.0
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSY--VAAFGCLI 60
AA++SS S + S S++F ++YK ++ A++ Q+++ +AA ++
Sbjct: 340 AAIVSSLASMLNSISTIFTMDIYKKYINKD-----------ASEKQLVNVGRIAAVVAVV 388
Query: 61 MAV 63
+A
Sbjct: 389 IAA 391
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 25.6 bits (57), Expect = 3.0
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQN 32
+ AA MS+ + + ++ ++YK + +
Sbjct: 332 LFAATMSTVSTHLNWGAAYLVNDIYKRFIKPD 363
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNV 33
AA+MS+ DS +L +SS +++Y I +
Sbjct: 330 AAIMSTVDSQLLQSSSTIIKDLYLNIRPDQI 360
>gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative
plasmid. This model describes topoisomerase III from
bacteria and its equivalents encoded on plasmids. The
gene is designated topB if found in the bacterial
chromosome, traE on conjugative plasmid RP4, etc. These
enzymes are involved in the control of DNA topology. DNA
topoisomerase III belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 660
Score = 25.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 4 AVMSSADSSVLSASSMFARNVYKLIFRQ 31
A++ + + LS S RNVYKLI +
Sbjct: 375 AIIPTGNDFNLSDLSEEERNVYKLIAQN 402
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AV S+A + +++ SS+ ++Y+ N
Sbjct: 338 MAVTSTASAELIAVSSIVTYDIYRTYINPN 367
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 25.3 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 17 SSMFARNVYKLIFR--QNVYFQRVLSS 41
SS+ AR V +FR + F V SS
Sbjct: 128 SSVLARLVNIYLFRCNNKMLF--VTSS 152
>gnl|CDD|240629 cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and
catalytic domains. Transhydrogenases found in bacterial
and inner mitochondrial membranes link
NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matrix side. DI contains 2
domains in Rossmann-like folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
a classical Rossmann domain.
Length = 363
Score = 25.1 bits (56), Expect = 4.3
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 16 ASSMFARNVYKLI 28
AS ++A+N+ +
Sbjct: 323 ASQLYAKNLLNFL 335
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 25.2 bits (56), Expect = 4.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AA MSS DS++ S +++ ++YK F++
Sbjct: 343 AAAMSSIDSALNSLATVTVIDIYKRFFKKE 372
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 24.9 bits (55), Expect = 5.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQN 32
AA MS +V + +++F ++Y+ R++
Sbjct: 334 AAFMSGMAGNVSAFNTVFTYDIYQTYIRKD 363
>gnl|CDD|215256 PLN02462, PLN02462, sedoheptulose-1,7-bisphosphatase.
Length = 304
Score = 24.7 bits (54), Expect = 6.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 23 NVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLI 60
+VY++I ++ F V S KS + ++L VA G L+
Sbjct: 220 DVYQIIVKEKGVFTNVTSPKSKAKLRLLFEVAPLGLLV 257
>gnl|CDD|179654 PRK03818, PRK03818, putative transporter; Validated.
Length = 552
Score = 24.4 bits (54), Expect = 7.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 50 LSYVAAFGCLIMAVPPVIIGAIAKSTDKVRSLAFC 84
LS++ +G LI AVP +I+G +A+ K+ L C
Sbjct: 464 LSWIG-YGFLITAVPLLIVGILARMLAKMNYLTLC 497
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 24.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQ 31
M A++MSS S SAS++F ++Y I ++
Sbjct: 360 MLASLMSSLTSIFNSASTLFTMDIYTKIRKK 390
>gnl|CDD|217957 pfam04196, Bunya_RdRp, Bunyavirus RNA dependent RNA polymerase.
The bunyaviruses are enveloped viruses with a genome
consisting of 3 ssRNA segments (called L, M and S). The
nucleocapsid protein is encode on the small (S) genomic
RNA. The L segment codes for an RNA polymerase. This
family contains the RNA dependent RNA polymerase on the
L segment.
Length = 735
Score = 24.7 bits (54), Expect = 8.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 10 DSSVLSASSMFARNVYKLIFRQN 32
S+VL A S F+++ Y+
Sbjct: 259 KSAVLKALSNFSKHWYEPKGSDL 281
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 24.4 bits (54), Expect = 9.0
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 3 AAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMA 62
AA++++ +L+A+S A ++Y + R A++ + L VA +++
Sbjct: 333 AAILATVAGLLLAAASALAHDLYAKVIRPG-----------ASEREEL-RVARIAAVVIG 380
Query: 63 VPPVIIGAIAKSTD--KVRSLAFC 84
V +++ +A + + +LAF
Sbjct: 381 VVAILLALLAPPQNVAFLVALAFA 404
>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase. This
is a family of S-adenosylmethionine decarboxylase
(SAMDC) proenzymes. In the biosynthesis of polyamines
SAMDC produces decarboxylated S-adenosylmethionine,
which serves as the aminopropyl moiety necessary for
spermidine and spermine biosynthesis from putrescine.
The Pfam alignment contains both the alpha and beta
chains that are cleaved to form the active enzyme.
Length = 328
Score = 24.2 bits (53), Expect = 10.0
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 10 DSSVLSASSMFARNVYK 26
DS VLS SS+F V K
Sbjct: 59 DSYVLSESSLF---VSK 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.128 0.343
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,782,469
Number of extensions: 280618
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 58
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)