RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7241
(84 letters)
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 31.2 bits (71), Expect = 0.021
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSY----VAAF 56
++AA++SS S + S +++F ++YK + ++++
Sbjct: 329 LAAAIVSSLASMLNSTATIFTMDIYKEYIS-----------PDSGDHKLVNVGRTAAVVA 377
Query: 57 GCLIMAVPPVIIGA 70
+ + P++ G
Sbjct: 378 LIIACLIAPMLGGI 391
Score = 29.7 bits (67), Expect = 0.080
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 19 MFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72
++ N+Y F Q QR L++KS ++AQ AAF LI+ V+ G A
Sbjct: 227 LWVANLYYWGFNQ-YIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAA 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.042
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 20/66 (30%)
Query: 2 SAAVMSSADSSVLSASSMF--ARNVYKLIF----R-QNVYFQRVLSSKSATQAQ------ 48
+A ++ D S S F R ++F R Y L +
Sbjct: 279 TAVAIAETD----SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 49 ---MLS 51
MLS
Sbjct: 335 PSPMLS 340
Score = 29.2 bits (65), Expect = 0.13
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 5 VMSSADSSVL-SASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFG 57
V + D S L S + + I R V ++ K+ +++ FG
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-------THILDFG 505
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 29.4 bits (66), Expect = 0.12
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 1 MSAAVMSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSY----VAAF 56
++AA++SS S + S +++F ++YK + ++++
Sbjct: 358 LAAAIVSSLASMLNSTATIFTMDIYKEYIS-----------PDSGDHKLVNVGRTAAVVA 406
Query: 57 GCLIMAVPPVIIGA 70
+ + P++ G
Sbjct: 407 LIIAALIAPMLGGI 420
Score = 28.6 bits (64), Expect = 0.19
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 33 VYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIA 72
QR L++KS ++AQ AAF LI+ V+ G A
Sbjct: 269 YIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAA 308
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 25.3 bits (56), Expect = 2.7
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 22 RNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAF 56
+K +FRQ + + +++ + + F
Sbjct: 215 SRAFKTLFRQGDLKENAKNLLENQESENVKKMCHF 249
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 25.2 bits (55), Expect = 3.2
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 6 MSSADSSVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSY 52
+A VL S +R + R N F V S Q ++
Sbjct: 241 KPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGAQESIIKG 287
>1sdo_A Bstyi; restriction endonuclease, hydrolase; 1.85A {Geobacillus
stearothermophilus} SCOP: c.52.1.21 PDB: 1vrr_A 2p0j_A
Length = 203
Score = 25.0 bits (53), Expect = 3.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 35 FQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIG 69
+ +SS + L V G + AVP V+IG
Sbjct: 166 LSKEMSSGISYYEGELYNVIRQGRGVPAVPLVLIG 200
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 24.5 bits (54), Expect = 4.7
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 4 AVMSSADSSVLSASSMFARNVYKLIFR----QNVYF-----QRVLS-----SKSATQAQM 49
A + + ++ F ++ + + QNV L S + ++
Sbjct: 2 AGETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDEL 61
Query: 50 LS 51
L
Sbjct: 62 LR 63
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47),
member 1, (collagen binding...; chaperone-peptide
complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A
4au4_A 4awr_A 4au3_B
Length = 392
Score = 24.5 bits (54), Expect = 5.3
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 5 VMSSADSSVLSASSMFARNVYKLIFR----QNVYF-----QRVLS-----SKSATQAQML 50
++S +++ S+ A ++Y+ + + +N+ L K+ T +Q
Sbjct: 1 MLSPKAATLAERSAGLAFSLYQAMAKDQAVENILLSPVVVASSLGLVSLGGKATTASQAK 60
Query: 51 S 51
+
Sbjct: 61 A 61
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 24.5 bits (54), Expect = 5.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 15 SASSMFARNVYKLI 28
AS ++A+NV L+
Sbjct: 338 HASELYAKNVTALL 351
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 24.2 bits (53), Expect = 6.1
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 15 SASSMFARNVYKLI 28
+S ++ N+ L+
Sbjct: 329 QSSQLYGTNLVNLL 342
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 24.2 bits (53), Expect = 6.3
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 15 SASSMFARNVYKLI 28
AS +FA+N+ +
Sbjct: 330 DASPLFAKNLLNFL 343
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 24.2 bits (53), Expect = 7.5
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 15 SASSMFARNVYKLI 28
SAS ++A+N+ +
Sbjct: 348 SASLLYAKNLVTFL 361
>1qmn_A AACT, alpha-1-antichymotrypsin; serpin, serine proteinase
inhibitor, partial loop insertion, loop-sheet
polymerization, emphysema, disease mutation; 2.27A
{Homo sapiens} SCOP: e.1.1.1 PDB: 3dlw_A
Length = 401
Score = 24.2 bits (53), Expect = 7.5
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 7 SSADSSVLSASSMFARNVYKLIFR----QNVYFQRVLSS----------KSATQAQMLS 51
+ D + SA+ FA ++YK + +NV F S + T ++L
Sbjct: 21 THVDLGLASANVDFAFSLYKQLVLKAPDKNVIFSPPSISTALAFLSLGAHNTTLTEILK 79
>1as4_A Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A
{Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_A* 4caa_A 3caa_A
Length = 341
Score = 23.7 bits (52), Expect = 8.1
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 7 SSADSSVLSASSMFARNVYKLIFR----QNVYF-----QRVLS-----SKSATQAQMLS 51
+ D + SA+ FA ++YK + +NV F L+ + + T ++L
Sbjct: 1 THVDLGLASANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILK 59
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 23.9 bits (51), Expect = 8.7
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 12 SVLSASSMFARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCL 59
+ L ++ +N IFR + + ++ Q + + +F L
Sbjct: 110 ATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGL 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.128 0.343
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,072,548
Number of extensions: 47714
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 29
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)