RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7241
         (84 letters)



>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus
           stearothermophilus [TaxId: 1422]}
          Length = 203

 Score = 25.7 bits (56), Expect = 0.65
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 14/67 (20%)

Query: 17  SSMFARNVYK--LIFRQN------VY------FQRVLSSKSATQAQMLSYVAAFGCLIMA 62
            S  A +++   + F  +      V         + +SS  +     L  V   G  + A
Sbjct: 134 YSFVAYDLFVKHMAFYVSDKIDVGVEILPMKELSKEMSSGISYYEGELYNVIRQGRGVPA 193

Query: 63  VPPVIIG 69
           VP V+IG
Sbjct: 194 VPLVLIG 200


>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 319

 Score = 23.9 bits (51), Expect = 3.3
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 21  ARNVYKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKSTDKV 78
              +Y   +++  Y   V     A+        A  GC  + + P ++G + K   K+
Sbjct: 205 VTKIYN-YYKKFGYKTIV---MGASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKL 258


>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
           aldolase/transaldolase {Thermus thermophilus [TaxId:
           274]}
          Length = 211

 Score = 23.2 bits (49), Expect = 5.3
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 25  YKLIFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS--TDK 77
             +   Q       + + S    + ++  A  G  I  +P  +   + K   TD 
Sbjct: 155 EIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLLKHPLTDI 209


>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
           aldolase/transaldolase {Thermotoga maritima [TaxId:
           2336]}
          Length = 218

 Score = 22.8 bits (48), Expect = 8.0
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 28  IFRQNVYFQRVLSSKSATQAQMLSYVAAFGCLIMAVPPVIIGAIAKS--TDK 77
           I+    +   ++++       ++   A  G  I+ +P  ++  + K   TD 
Sbjct: 152 IYNNYGFETEIIAASIRHPMHVVEA-ALMGVDIVTMPFAVLEKLFKHPMTDL 202


>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 325

 Score = 22.6 bits (48), Expect = 8.9
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 3/17 (17%)

Query: 10 DSSVLSASSMFARNVYK 26
          ++ VLS SSMF   V K
Sbjct: 57 EAYVLSESSMF---VSK 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.128    0.343 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 236,339
Number of extensions: 7268
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 5
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)