BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7246
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
           Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
           Export Factor
 pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
           Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
           Factor
          Length = 250

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 87  IHDPLNLNSLQDEEINR--AMNAVTPKSSPLPTPQHRKGEIEVIIPPNICDPLNLAQ-CD 143
           ++D L + +   EEI R  AM A TP SSP+PT    + E+           L  +Q C 
Sbjct: 161 VNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCL 220

Query: 144 DENTADY 150
            +N  DY
Sbjct: 221 QDNNWDY 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,726,553
Number of Sequences: 62578
Number of extensions: 116425
Number of successful extensions: 177
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)