BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7246
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3KQ55|MEPCE_DANRE 7SK snRNA methylphosphate capping enzyme OS=Danio rerio GN=mepce
PE=2 SV=2
Length = 645
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 1 MSSCMKEEAGREKFDDNKNSKVNSKKPVVEEKDKQSNNKKNVSKSYHNKHNRKRSQVMLG 60
+S EA EK N+ + + E KQS+N +K K N++R+ + G
Sbjct: 44 LSKDAGSEASLEKSATTDNNASSESAVLGAESSKQSHNG---TKPQQQKVNKRRNTMSAG 100
Query: 61 SK----CHKRRRIDYSRRFIPPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLP 116
K +RRR + + PT FLLGGNI DPLNLNSL DEE+N+A+NA TPKSSPLP
Sbjct: 101 FKHPGYGKRRRRANSESESVLPTNFLLGGNIFDPLNLNSLLDEEVNKALNAETPKSSPLP 160
Query: 117 TPQHRKGEIEVIIPPNICDPLNLAQCDDENTADYEAQFILPLKKMKRPKKKRKKSSCA 174
+ +E++IP +I DPLNL C +T D + + PLK ++ R K A
Sbjct: 161 A--KNRDPVEILIPRDITDPLNL-NC--LSTGD--SLLVSPLKSGGGRRRHRNKHHGA 211
>sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce
PE=1 SV=2
Length = 666
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 65 KRRRIDYSRRFIPPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGE 124
+RRR++ + P+ FLLGGNI DPLNLNSL DEE++RA+NA TPKSSPLP +
Sbjct: 144 RRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRALNAETPKSSPLPAKG--RDP 201
Query: 125 IEVIIPPNICDPLNLAQCDDE 145
+E++IP +I DPL+L C DE
Sbjct: 202 VEILIPKDITDPLSLNTCTDE 222
>sp|Q7K480|BN3D1_DROME Probable RNA methyltransferase bin3 OS=Drosophila melanogaster
GN=bin3 PE=1 SV=1
Length = 1367
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 11/91 (12%)
Query: 75 FIPPTKFLLGGNIHDPLNLNSLQDEEINRAMN-----AVTPKSSPLPTPQHRKGEIEVII 129
+PPTKFLLGGNI DPLNLNSLQ+E + A + A TP+ SP+ TP ++EVII
Sbjct: 305 IVPPTKFLLGGNISDPLNLNSLQNENTSNASSTNNTPATTPRQSPITTPP----KVEVII 360
Query: 130 PPNICDPLNLAQCDDENTADYEAQFILPLKK 160
PPNI DPL+L D ++ +YE Q P+K+
Sbjct: 361 PPNIHDPLHL--LDPVDSMEYEKQLTSPMKR 389
>sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE
PE=1 SV=1
Length = 689
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Query: 65 KRRRIDYSRRFIPPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGE 124
+RRR++ + P+ FLLGGNI DPLNLNSL DEE++R +NA TPKSSPLP +
Sbjct: 169 RRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKG--RDP 226
Query: 125 IEVIIPPNICDPLNLAQCDDE 145
+E++IP +I DPL+L C DE
Sbjct: 227 VEILIPKDITDPLSLNTCTDE 247
>sp|Q3APW7|PANC_CHLCH Pantothenate synthetase OS=Chlorobium chlorochromatii (strain CaD3)
GN=panC PE=3 SV=1
Length = 290
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 27 PVVEEKDKQSNNKKNVSKSYHNKHNRKRSQVMLGSKCHKRRRI 69
P+V E D + + +N+ Y + + RKR+ V+ G CH + R+
Sbjct: 174 PIVREADGLAKSSRNI---YLSSNERKRATVLYGGLCHAKARL 213
>sp|Q6UWJ1|TMCO3_HUMAN Transmembrane and coiled-coil domain-containing protein 3 OS=Homo
sapiens GN=TMCO3 PE=2 SV=1
Length = 677
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 5 MKEEAGREKFDDNKNSKVNSKKPVVEEKDKQSNNKKNVSK 44
++EE FDDNK+ K + + V+ +++++N+K+N++K
Sbjct: 194 LEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITK 233
>sp|O94416|T2FA_SCHPO Transcription initiation factor IIF subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfg1 PE=1 SV=2
Length = 540
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 14 FDDNKNSKVNSKKPVVEEKDKQSNNKKNVSKSYHN-------KHNRKRSQVMLGSKCHKR 66
F++ K + KKP VEE D Q+N + + + + RK ++ L K H
Sbjct: 9 FENVKQENPDEKKPKVEEPDSQNNASTQSQQKFLDFQLSWCPESERKTTKYHL-LKFHSN 67
Query: 67 RRIDYSRRFIPPTK 80
+ ID S+ F+PP K
Sbjct: 68 KAIDPSKSFVPPIK 81
>sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3
Length = 618
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 87 IHDPLNLNSLQDEEINRA--MNAVTPKSSPLPTPQHRKGEIEVIIPPNICDPLNLAQ-CD 143
++D L + + EEI RA M+A TP SSP+PT + E+ L +Q C
Sbjct: 529 VNDELFVRNASPEEIQRAFAMSAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCL 588
Query: 144 DENTADY 150
+N DY
Sbjct: 589 QDNNWDY 595
>sp|B8D7Q4|AMPA_BUCAT Probable cytosol aminopeptidase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=pepA PE=3 SV=1
Length = 499
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 129 IPPNICDPLNLAQCDDENTADYEAQFILPLKKMKRPKKKRKKSSCAM 175
+PPNIC+PL L+ E + YE ++ + +K+ K+ + A+
Sbjct: 190 LPPNICNPLYLSYKAQELSKKYENNIVVEIIDIKKMKELGMNAYIAV 236
>sp|P57448|AMPA_BUCAI Cytosol aminopeptidase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=pepA PE=3 SV=1
Length = 499
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 129 IPPNICDPLNLAQCDDENTADYEAQFILPLKKMKRPKKKRKKSSCAM 175
+PPNIC+PL L+ E + YE ++ + +K+ K+ + A+
Sbjct: 190 LPPNICNPLYLSYKAQELSKKYENNIVVEIIDIKKMKELGMNAYIAV 236
>sp|B8D9F2|AMPA_BUCA5 Probable cytosol aminopeptidase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=pepA PE=3 SV=1
Length = 499
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 129 IPPNICDPLNLAQCDDENTADYEAQFILPLKKMKRPKKKRKKSSCAM 175
+PPNIC+PL L+ E + YE ++ + +K+ K+ + A+
Sbjct: 190 LPPNICNPLYLSYKAQELSKKYENNIVVEIIDIKKMKELGMNAYIAV 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,850,558
Number of Sequences: 539616
Number of extensions: 2959627
Number of successful extensions: 15245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 14531
Number of HSP's gapped (non-prelim): 700
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)