Query psy7246
Match_columns 178
No_of_seqs 29 out of 31
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 21:46:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00101 Photosystem I light-h 64.7 5.3 0.00011 35.0 2.4 12 84-96 186-197 (250)
2 PLN00170 photosystem II light- 55.5 8.2 0.00018 34.0 2.0 12 84-95 193-204 (255)
3 COG1481 Uncharacterized protei 35.8 17 0.00037 33.0 0.9 13 80-92 128-140 (308)
4 PF05179 CDC73: RNA pol II acc 31.9 26 0.00057 30.5 1.4 22 120-142 114-135 (273)
5 PLN00097 photosystem I light h 23.1 65 0.0014 28.3 2.3 11 84-95 179-189 (244)
6 PRK14132 riboflavin kinase; Pr 22.4 55 0.0012 26.2 1.6 23 120-142 97-119 (126)
7 TIGR00647 MG103 conserved hypo 19.6 41 0.00088 29.9 0.3 12 80-91 105-116 (279)
8 COG1339 Transcriptional regula 18.7 47 0.001 29.2 0.5 28 115-142 177-205 (214)
9 PF14527 LAGLIDADG_WhiA: WhiA 17.8 22 0.00048 26.1 -1.5 11 81-91 9-19 (93)
10 PF08833 Axin_b-cat_bind: Axin 16.2 55 0.0012 22.5 0.3 24 92-117 3-27 (45)
No 1
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=64.73 E-value=5.3 Score=34.99 Aligned_cols=12 Identities=50% Similarity=0.985 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCc
Q psy7246 84 GGNIHDPLNLNSL 96 (178)
Q Consensus 84 GGNI~DPLNLNSl 96 (178)
|| +||||+|.+.
T Consensus 186 GG-~FDPLgl~~~ 197 (250)
T PLN00101 186 GG-IFNPLNFAPT 197 (250)
T ss_pred CC-ccCccCCCcc
Confidence 66 7999999863
No 2
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=55.52 E-value=8.2 Score=34.02 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCC
Q psy7246 84 GGNIHDPLNLNS 95 (178)
Q Consensus 84 GGNI~DPLNLNS 95 (178)
||.+||||+|.+
T Consensus 193 GG~~FDPLGl~~ 204 (255)
T PLN00170 193 GGKFFDPLGLAG 204 (255)
T ss_pred CCcccCcccccc
Confidence 999999999986
No 3
>COG1481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.79 E-value=17 Score=33.04 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=11.8
Q ss_pred ccccCCCCCCCCC
Q psy7246 80 KFLLGGNIHDPLN 92 (178)
Q Consensus 80 kFLLGGNI~DPLN 92 (178)
-||-||.|+||..
T Consensus 128 AFLagGSis~Pe~ 140 (308)
T COG1481 128 AFLAGGSISDPET 140 (308)
T ss_pred HHHcCCccCCCCC
Confidence 4999999999995
No 4
>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme. The Paf1 complex, which also contains Cdc73, Ctr9, Hpr1, Ccr4, Rtf1 and Leo1, is required for full expression of a subset of yeast genes, particularly those responsive to signals from the Pkc1/MAP kinase cascade. The complex appears to play an essential role in RNA elongation []. ; PDB: 3V46_A.
Probab=31.91 E-value=26 Score=30.51 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=9.9
Q ss_pred CCCCccEEeCCCCCCCCCCCCCC
Q psy7246 120 HRKGEIEVIIPPNICDPLNLAQC 142 (178)
Q Consensus 120 ~~~dpveViIP~ni~DPLnL~~~ 142 (178)
..++|| ||||+-.+..|+|.+.
T Consensus 114 ~~~~PI-IiVp~s~sSlitm~Ni 135 (273)
T PF05179_consen 114 RSKDPI-IIVPPSASSLITMYNI 135 (273)
T ss_dssp --S--E-EE----TT-SS-TTTH
T ss_pred CCCCCE-EEECCcccchhHHHHH
Confidence 356777 8899999999999874
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=23.07 E-value=65 Score=28.29 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q psy7246 84 GGNIHDPLNLNS 95 (178)
Q Consensus 84 GGNI~DPLNLNS 95 (178)
|| .||||+|.+
T Consensus 179 gg-~FDPlgl~~ 189 (244)
T PLN00097 179 KG-LFDKFGWAK 189 (244)
T ss_pred CC-CCCccccCC
Confidence 55 599999976
No 6
>PRK14132 riboflavin kinase; Provisional
Probab=22.38 E-value=55 Score=26.20 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.3
Q ss_pred CCCCccEEeCCCCCCCCCCCCCC
Q psy7246 120 HRKGEIEVIIPPNICDPLNLAQC 142 (178)
Q Consensus 120 ~~~dpveViIP~ni~DPLnL~~~ 142 (178)
|..+.||||=|-++.|=|+|.+.
T Consensus 97 h~~~~lEiIAp~~LR~~L~LkDG 119 (126)
T PRK14132 97 HSKNVLEIIAPIKLRKFLNLKDG 119 (126)
T ss_pred CCCCeEEEECCcchHhhcCCCCC
Confidence 55789999999999999999763
No 7
>TIGR00647 MG103 conserved hypothetical protein.
Probab=19.64 E-value=41 Score=29.89 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=11.0
Q ss_pred ccccCCCCCCCC
Q psy7246 80 KFLLGGNIHDPL 91 (178)
Q Consensus 80 kFLLGGNI~DPL 91 (178)
-||-||.|+||-
T Consensus 105 aFL~~GSv~~P~ 116 (279)
T TIGR00647 105 AFLSGGSVSDLE 116 (279)
T ss_pred HHhCCeecCCCC
Confidence 599999999996
No 8
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=18.73 E-value=47 Score=29.18 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=22.9
Q ss_pred CCCCCCC-CCccEEeCCCCCCCCCCCCCC
Q psy7246 115 LPTPQHR-KGEIEVIIPPNICDPLNLAQC 142 (178)
Q Consensus 115 LP~p~~~-~dpveViIP~ni~DPLnL~~~ 142 (178)
+|..+|. .|.||||=|-.+.|=|||...
T Consensus 177 ~P~rT~h~~dviEIIapv~LR~~LnLkDG 205 (214)
T COG1339 177 IPERTHHPTDVIEIIAPVKLRDELNLKDG 205 (214)
T ss_pred eeccccCCcceEEEEccHhHHHHhCCCCC
Confidence 4445544 899999999999999999864
No 9
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=17.76 E-value=22 Score=26.11 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=7.9
Q ss_pred cccCCCCCCCC
Q psy7246 81 FLLGGNIHDPL 91 (178)
Q Consensus 81 FLLGGNI~DPL 91 (178)
||-+|.|.||-
T Consensus 9 Fl~~Gsi~~P~ 19 (93)
T PF14527_consen 9 FLACGSISDPK 19 (93)
T ss_dssp HHHHEEE--TT
T ss_pred HHCCeeccCCC
Confidence 88899999994
No 10
>PF08833 Axin_b-cat_bind: Axin beta-catenin binding domain; InterPro: IPR014936 Proteins in this entry are found on the scaffolding protein Axin which is a component of the beta-catenin destruction complex. It competes with the tumour suppressor adenomatous polyposis coli protein (APC) for binding to beta-catenin []. ; PDB: 1QZ7_B.
Probab=16.17 E-value=55 Score=22.51 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=10.9
Q ss_pred CCCCcchHHHHHhhhccCCCC-CCCCC
Q psy7246 92 NLNSLQDEEINRAMNAVTPKS-SPLPT 117 (178)
Q Consensus 92 NLNSl~dEevnra~NA~TPkS-SPLP~ 117 (178)
|-+|++||-|+|.+ .||.. ||.+.
T Consensus 3 d~qsILD~HvsRV~--rtPg~~SP~~~ 27 (45)
T PF08833_consen 3 DPQSILDDHVSRVW--RTPGCQSPRPQ 27 (45)
T ss_dssp -TTHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHh--cCCCCCCCCCc
Confidence 44789999999999 56655 66664
Done!