Query psy7246
Match_columns 178
No_of_seqs 29 out of 31
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 21:47:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dnn_A Protein quaking, MQKI, 19.5 21 0.00071 24.7 -0.2 18 86-105 25-42 (56)
2 3ue2_A Poly(U)-binding-splicin 17.8 35 0.0012 24.4 0.6 44 77-133 18-61 (118)
3 3hyi_A Protein DUF199/WHIA; la 16.7 19 0.00065 30.7 -1.2 12 80-91 118-129 (295)
4 2pe8_A Splicing factor 45; RRM 16.2 74 0.0025 21.9 2.0 44 76-132 5-48 (105)
5 1qz7_B Axin; beta-catenin, pro 14.5 48 0.0016 23.7 0.6 20 92-113 34-53 (70)
6 2ytu_A Friend leukemia integra 13.7 1.2E+02 0.0041 23.1 2.7 41 84-139 1-41 (128)
7 2k84_A P9; HOST-virus interact 13.1 55 0.0019 20.1 0.5 7 90-96 22-28 (30)
8 3ukx_C Bimax2 peptide; arm rep 12.6 54 0.0019 19.8 0.4 9 162-170 4-12 (28)
9 4het_A Hypothetical glycoside 11.6 50 0.0017 28.5 0.0 12 1-12 2-13 (360)
10 2q8k_A Proliferation-associate 8.3 2.2E+02 0.0076 24.3 2.8 23 148-170 359-381 (401)
No 1
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=19.46 E-value=21 Score=24.66 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=14.7
Q ss_pred CCCCCCCCCCcchHHHHHhh
Q psy7246 86 NIHDPLNLNSLQDEEINRAM 105 (178)
Q Consensus 86 NI~DPLNLNSl~dEevnra~ 105 (178)
||| +.+.-|+||||+|.=
T Consensus 25 ~iF--~H~eRLldEEI~rVR 42 (56)
T 4dnn_A 25 GIF--NHLERLLDEEISRVR 42 (56)
T ss_dssp TTC--SSHHHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHHHH
Confidence 466 788899999999864
No 2
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=17.83 E-value=35 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=31.1
Q ss_pred CCcccccCCCCCCCCCCCCcchHHHHHhhhccCCCCCCCCCCCCCCCccEEeCCCCC
Q psy7246 77 PPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPPNI 133 (178)
Q Consensus 77 ~PtkFLLGGNI~DPLNLNSl~dEevnra~NA~TPkSSPLP~p~~~~dpveViIP~ni 133 (178)
+||..|+=.|++||-.|..=..|||-.... .....++|.||.+-
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~-------------k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECG-------------KFGAVNRVIIYQEK 61 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHT-------------TTSCEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHh-------------ccCCEeEEEEeecC
Confidence 478888889999998876555677766663 12335668888764
No 3
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=16.69 E-value=19 Score=30.67 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=10.8
Q ss_pred ccccCCCCCCCC
Q psy7246 80 KFLLGGNIHDPL 91 (178)
Q Consensus 80 kFLLGGNI~DPL 91 (178)
-||-||.|+||=
T Consensus 118 aFLa~GSv~dP~ 129 (295)
T 3hyi_A 118 LFLSGGSMTNPR 129 (295)
T ss_dssp HHHHHEEECCTT
T ss_pred HHhcCeecCCCC
Confidence 489999999996
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=16.18 E-value=74 Score=21.86 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=29.0
Q ss_pred cCCcccccCCCCCCCCCCCCcchHHHHHhhhccCCCCCCCCCCCCCCCccEEeCCCC
Q psy7246 76 IPPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPPN 132 (178)
Q Consensus 76 v~PtkFLLGGNI~DPLNLNSl~dEevnra~NA~TPkSSPLP~p~~~~dpveViIP~n 132 (178)
-.||..|+=+|++||-+|..-..+||-...- ......+|.||.+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-------------~~G~V~~v~i~~~ 48 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECE-------------KYGKVGKCVIFEI 48 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGG-------------GGSCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHH-------------hcCCEEEEEEecC
Confidence 3577888888999998876556677766663 1233567888765
No 5
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=14.47 E-value=48 Score=23.74 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=16.7
Q ss_pred CCCCcchHHHHHhhhccCCCCC
Q psy7246 92 NLNSLQDEEINRAMNAVTPKSS 113 (178)
Q Consensus 92 NLNSl~dEevnra~NA~TPkSS 113 (178)
|-+|++||-|.|.|- ||.+.
T Consensus 34 dPesILDeHvsRV~k--tPGcq 53 (70)
T 1qz7_B 34 NPESILDEHVQRVMK--TPGCQ 53 (70)
T ss_pred ChHHHHHHHHHHHHh--CcCCC
Confidence 568999999999995 87653
No 6
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.73 E-value=1.2e+02 Score=23.10 Aligned_cols=41 Identities=39% Similarity=0.602 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCcchHHHHHhhhccCCCCCCCCCCCCCCCccEEeCCCCCCCCCCC
Q psy7246 84 GGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPPNICDPLNL 139 (178)
Q Consensus 84 GGNI~DPLNLNSl~dEevnra~NA~TPkSSPLP~p~~~~dpveViIP~ni~DPLnL 139 (178)
||+=.-|+|-+|..|| +.+|.| |.-..+...|+||. ||..-
T Consensus 1 ~~~~~~~~~~~~~~~~-----------~~~~~p-p~~~~e~~rl~IP~---DP~~W 41 (128)
T 2ytu_A 1 GSSGSSGMNYNSYMDE-----------KNGPPP-PNMTTNERRVIVPA---DPTLW 41 (128)
T ss_dssp CCCCCCCCCCCCCCCC-----------CCCSSS-CSCCCCSSCCSCCS---CGGGC
T ss_pred CCCCcCCcccchhhhh-----------ccCCCC-CchhhhhhhccCCc---chhhC
Confidence 5666778999999766 344422 23446678899987 55443
No 7
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=13.14 E-value=55 Score=20.14 Aligned_cols=7 Identities=71% Similarity=0.928 Sum_probs=5.3
Q ss_pred CCCCCCc
Q psy7246 90 PLNLNSL 96 (178)
Q Consensus 90 PLNLNSl 96 (178)
-|||+||
T Consensus 22 DLNL~SL 28 (30)
T 2k84_A 22 DLNLDSL 28 (30)
T ss_dssp GGTTTSS
T ss_pred ccchhhc
Confidence 3788887
No 8
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=12.63 E-value=54 Score=19.75 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=3.6
Q ss_pred CCccccccc
Q psy7246 162 KRPKKKRKK 170 (178)
Q Consensus 162 ~~r~rkrk~ 170 (178)
++|+||||+
T Consensus 4 rrrrrkrkr 12 (28)
T 3ukx_C 4 RRRRRKRKR 12 (28)
T ss_dssp --CCCCCCC
T ss_pred hHHHHHhhc
Confidence 444555554
No 9
>4het_A Hypothetical glycoside hydrolase; galactose-binding domain-like, xylanase, PF13201 family, STR genomics; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=11.60 E-value=50 Score=28.48 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=0.4
Q ss_pred Ccchhhhhhccc
Q psy7246 1 MSSCMKEEAGRE 12 (178)
Q Consensus 1 ~~~~~~~~~~~~ 12 (178)
+|||.|+||-..
T Consensus 2 ~sscikdEalN~ 13 (360)
T 4het_A 2 ATSCIQDEALNS 13 (360)
T ss_dssp -----------C
T ss_pred CcccccccCCCc
Confidence 589999997543
No 10
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A
Probab=8.30 E-value=2.2e+02 Score=24.26 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=9.9
Q ss_pred hhhhhhhhccccccCCccccccc
Q psy7246 148 ADYEAQFILPLKKMKRPKKKRKK 170 (178)
Q Consensus 148 ~e~e~~l~sP~k~~~~r~rkrk~ 170 (178)
+|+...|.+|++++++.++|.+.
T Consensus 359 ~e~~~~l~~~~~~~~~~~~~~~~ 381 (401)
T 2q8k_A 359 AELKALLQSSASRKTQKKKKKKA 381 (401)
T ss_dssp HHHHHHHHSCC------------
T ss_pred HHHHHHHhccccccccccccccc
Confidence 67889999999866554444333
Done!