Query psy7246
Match_columns 178
No_of_seqs 29 out of 31
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 21:47:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ctaa2 b.43.5.2 (A:90-220) CT 29.6 8.2 0.0006 28.0 1.1 27 116-142 96-122 (131)
2 d1o0pa_ d.58.7.1 (A:) Splicing 26.6 13 0.00095 24.0 1.6 51 77-135 2-52 (104)
3 d1rwta_ f.43.1.1 (A:) Chloroph 17.5 26 0.0019 25.9 1.8 21 85-106 145-165 (218)
4 d2vbua1 b.43.5.2 (A:2-132) CTP 14.6 11 0.00077 27.3 -1.1 23 120-142 100-122 (131)
5 d1pzta_ c.68.1.2 (A:) beta 1,4 10.9 1.1E+02 0.0078 23.5 3.8 53 73-130 3-56 (271)
6 d1vdda_ e.49.1.1 (A:) Recombin 7.6 57 0.0041 24.5 0.8 13 80-93 104-116 (199)
7 d2gycj1 c.12.1.1 (J:4-143) Rib 6.2 1.2E+02 0.0084 20.5 1.8 18 77-94 103-120 (140)
8 d1od6a_ c.26.1.3 (A:) Phosphop 6.1 58 0.0042 20.3 0.1 22 82-106 4-25 (160)
9 d1d6ga_ g.33.1.1 (A:) Cholecys 5.5 1.2E+02 0.0084 18.7 1.3 14 81-94 8-21 (47)
10 d1kama_ c.26.1.3 (A:) Nicotina 5.5 66 0.0048 20.0 0.1 14 82-96 6-19 (189)
No 1
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=29.59 E-value=8.2 Score=28.01 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=11.2
Q ss_pred CCCCCCCCccEEeCCCCCCCCCCCCCC
Q psy7246 116 PTPQHRKGEIEVIIPPNICDPLNLAQC 142 (178)
Q Consensus 116 P~p~~~~dpveViIP~ni~DPLnL~~~ 142 (178)
|..+|..|.||||=|-.+.+=|+|++.
T Consensus 96 P~rT~h~dvvEiIap~~LRe~L~L~DG 122 (131)
T d3ctaa2 96 PERTVYTDVIEIISDKYLREEINLHDG 122 (131)
T ss_dssp ESSCCCCSEEEEECC------------
T ss_pred ccCCCCCCEEEEECChhhHhhcCCCCC
Confidence 344455789999999999999999764
No 2
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.56 E-value=13 Score=23.98 Aligned_cols=51 Identities=25% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCcccccCCCCCCCCCCCCcchHHHHHhhhccCCCCCCCCCCCCCCCccEEeCCCCCCC
Q psy7246 77 PPTKFLLGGNIHDPLNLNSLQDEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIPPNICD 135 (178)
Q Consensus 77 ~PtkFLLGGNI~DPLNLNSl~dEevnra~NA~TPkSSPLP~p~~~~dpveViIP~ni~D 135 (178)
+||+.|.=.||++|-.|.+ |++.......+.-..+ ....-++|.||++...
T Consensus 2 ~Ps~vl~l~N~~~~~~l~~--~~~~~~i~edi~~e~~------k~G~v~~v~I~~~~~~ 52 (104)
T d1o0pa_ 2 HPTEVLCLMNMVLPEELLD--DEEYEEIVEDVRDECS------KYGLVKSIEIPRPVDG 52 (104)
T ss_dssp CCCSEEEEESSCCTTTTTS--HHHHHHHHHHHHHHHT------TTSCEEEEECCCCTTS
T ss_pred CCCcEEEEeCCCCHHHcCC--chhHHHHHHHHHHHhc------ccCceEEEEEeecCCC
Confidence 6899888889999999853 4333222211110111 1233578889876543
No 3
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=17.47 E-value=26 Score=25.91 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCcchHHHHHhhh
Q psy7246 85 GNIHDPLNLNSLQDEEINRAMN 106 (178)
Q Consensus 85 GNI~DPLNLNSl~dEevnra~N 106 (178)
|..+|||+|.. .+|+..+..+
T Consensus 145 ~g~fdPlg~~~-~~e~~~~~k~ 165 (218)
T d1rwta_ 145 GGSFDPLGLAD-DPEAFAELKV 165 (218)
T ss_dssp CGGGCTTCTTC-SHHHHHHHHH
T ss_pred CCCccccccCC-CHHHHHHHHH
Confidence 33699999965 4555555444
No 4
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=14.58 E-value=11 Score=27.34 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.9
Q ss_pred CCCCccEEeCCCCCCCCCCCCCC
Q psy7246 120 HRKGEIEVIIPPNICDPLNLAQC 142 (178)
Q Consensus 120 ~~~dpveViIP~ni~DPLnL~~~ 142 (178)
|..+.||||=|-++.+=|+|.+.
T Consensus 100 h~~~vvEiIap~~LRe~L~L~DG 122 (131)
T d2vbua1 100 HSSEIIEIIAPMKLREQFNLKDG 122 (131)
T ss_dssp SCEEEEEEECSSCHHHHTTCCTT
T ss_pred CCCCEEEEECCcchhhhCCCCCC
Confidence 34788999999999999999764
No 5
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.89 E-value=1.1e+02 Score=23.48 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCccCCcccccCCCCCCCCCCCCcc-hHHHHHhhhccCCCCCCCCCCCCCCCccEEeCC
Q psy7246 73 RRFIPPTKFLLGGNIHDPLNLNSLQ-DEEINRAMNAVTPKSSPLPTPQHRKGEIEVIIP 130 (178)
Q Consensus 73 ~~~v~PtkFLLGGNI~DPLNLNSl~-dEevnra~NA~TPkSSPLP~p~~~~dpveViIP 130 (178)
|..++| +|-|.|. ++++.-. -|+|......+.|.-.--|.--..+..|-||||
T Consensus 3 cp~~~p---~l~g~~~--~~~~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~kvaIIIP 56 (271)
T d1pzta_ 3 CPEESP---LLVGPML--IEFNIPVDLKLVEQQNPKVKLGGRYTPMDCISPHKVAIIIP 56 (271)
T ss_dssp CCSSCT---TCCCBCC--CCCSSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEE
T ss_pred CCCCCc---cCcCceE--eecCCCCCHHHHHHhCCCcCCCCEECCCCCcccceEEEEEe
Confidence 555666 4788884 4444322 234544444556644433332122446999998
No 6
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.56 E-value=57 Score=24.48 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=9.7
Q ss_pred ccccCCCCCCCCCC
Q psy7246 80 KFLLGGNIHDPLNL 93 (178)
Q Consensus 80 kFLLGGNI~DPLNL 93 (178)
.|.|||-|+ ||+=
T Consensus 104 YhVL~G~is-pl~g 116 (199)
T d1vdda_ 104 YHVLHGVLS-PMNG 116 (199)
T ss_dssp EEECSSCCB-GGGT
T ss_pred hhhhcCccC-cccC
Confidence 589999996 5543
No 7
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=6.18 E-value=1.2e+02 Score=20.46 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=14.2
Q ss_pred CCcccccCCCCCCCCCCC
Q psy7246 77 PPTKFLLGGNIHDPLNLN 94 (178)
Q Consensus 77 ~PtkFLLGGNI~DPLNLN 94 (178)
.+-+.|+.|.|..||++.
T Consensus 103 ~~vKiLg~Gel~~ki~i~ 120 (140)
T d2gycj1 103 EFAKVILAGEVTTPVTVR 120 (140)
T ss_dssp CCCBCCCSCCCCCCCCCC
T ss_pred eeeEEeccCcccCCEEEE
Confidence 345788899999998875
No 8
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=6.10 E-value=58 Score=20.31 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=15.0
Q ss_pred ccCCCCCCCCCCCCcchHHHHHhhh
Q psy7246 82 LLGGNIHDPLNLNSLQDEEINRAMN 106 (178)
Q Consensus 82 LLGGNI~DPLNLNSl~dEevnra~N 106 (178)
|.||. |||+=+.-|. =+.+|++
T Consensus 4 ifgGs-FdP~H~GHl~--ii~~a~~ 25 (160)
T d1od6a_ 4 VYPGS-FDPLTNGHLD--VIQRASR 25 (160)
T ss_dssp EEEEC-CTTCCHHHHH--HHHHHHH
T ss_pred Eeeec-cCCcCHHHHH--HHHHHHH
Confidence 56887 9999887762 2345665
No 9
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55 E-value=1.2e+02 Score=18.72 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=10.2
Q ss_pred cccCCCCCCCCCCC
Q psy7246 81 FLLGGNIHDPLNLN 94 (178)
Q Consensus 81 FLLGGNI~DPLNLN 94 (178)
|.-|-||.+|-+|.
T Consensus 8 l~ngsnit~~Celg 21 (47)
T d1d6ga_ 8 LVNGSNITPPCELG 21 (47)
T ss_dssp TTTTCSSSCCBCCS
T ss_pred HhcCCCCCChhhcc
Confidence 34455999998874
No 10
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=5.49 E-value=66 Score=20.05 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=10.2
Q ss_pred ccCCCCCCCCCCCCc
Q psy7246 82 LLGGNIHDPLNLNSL 96 (178)
Q Consensus 82 LLGGNI~DPLNLNSl 96 (178)
|+||. |||+=+.-+
T Consensus 6 lfgGS-FdP~H~GH~ 19 (189)
T d1kama_ 6 IFGGT-FDPPHNGHL 19 (189)
T ss_dssp EEEEC-CSSCCHHHH
T ss_pred EeccC-cCCCCHHHH
Confidence 45776 899888765
Done!