RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7246
         (178 letters)



>gnl|CDD|176987 CHL00046, atpI, ATP synthase CF0 A subunit.
          Length = 228

 Score = 29.1 bits (66), Expect = 0.97
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 65  KRRRIDYSRRFIPPTKFLLGGNI-HD---PLNL------NSLQDEEINRAMNAVTPKSSP 114
            ++ + Y  ++I PT  LL  NI  D   PL+L      N L DE +   + ++ P   P
Sbjct: 141 SKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVP 200

Query: 115 LPT 117
           +P 
Sbjct: 201 IPV 203


>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
           [Coenzyme metabolism].
          Length = 203

 Score = 26.0 bits (58), Expect = 9.6
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 119 QHRKGEIEVIIPPNICDPLNLAQCDDENTADYEAQF 154
           +H  G I V +       L L    D NT  +   F
Sbjct: 50  RHASGLICVALTEERAKRLGLPPMVDNNTDAHGTAF 85


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,793,884
Number of extensions: 785556
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 18
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)